Wall clock time and date at job start Tue Mar 31 2020 11:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 C 1.53006 * 109.47396 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47009 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99685 * 270.00276 * 5 4 3 7 7 H 1.07991 * 120.00002 * 141.79013 * 6 5 4 8 8 C 1.38815 * 119.99934 * 321.77827 * 6 5 4 9 9 N 1.31614 * 120.00030 * 158.87930 * 8 6 5 10 10 Si 1.86798 * 120.00278 * 338.87761 * 8 6 5 11 11 H 1.48503 * 109.47042 * 95.34398 * 10 8 6 12 12 H 1.48500 * 109.47276 * 215.34894 * 10 8 6 13 13 H 1.48506 * 109.47107 * 335.35041 * 10 8 6 14 14 C 1.46495 * 120.00340 * 90.00468 * 5 4 3 15 15 C 1.50703 * 109.47080 * 268.32513 * 14 5 4 16 16 C 1.33620 * 125.11826 * 95.59752 * 15 14 5 17 17 C 1.37960 * 115.05818 * 180.02562 * 16 15 14 18 18 C 1.34792 * 114.71066 * 0.02562 * 17 16 15 19 19 C 1.47831 * 125.27152 * 179.97438 * 18 17 16 20 20 C 1.39568 * 120.14478 * 359.73752 * 19 18 17 21 21 C 1.37961 * 119.85345 * 179.72618 * 20 19 18 22 22 C 1.38365 * 120.14271 * 0.56998 * 21 20 19 23 23 C 1.38361 * 120.28977 * 359.70595 * 22 21 20 24 24 C 1.37964 * 120.14634 * 359.97438 * 23 22 21 25 25 S 1.75849 * 125.11841 * 275.64018 * 15 14 5 26 26 H 1.08992 * 109.46736 * 299.99482 * 1 2 3 27 27 H 1.08998 * 109.47048 * 59.99687 * 1 2 3 28 28 H 1.09001 * 109.46654 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47517 * 240.00211 * 2 1 3 30 30 H 1.09004 * 109.47311 * 119.99968 * 2 1 3 31 31 H 1.09004 * 109.46891 * 60.00134 * 3 2 1 32 32 H 1.08998 * 109.47340 * 300.00134 * 3 2 1 33 33 H 1.08996 * 109.46542 * 60.00101 * 4 3 2 34 34 H 1.08998 * 109.47200 * 300.00483 * 4 3 2 35 35 H 0.96998 * 120.00612 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47780 * 148.32122 * 14 5 4 37 37 H 1.09006 * 109.46947 * 28.32012 * 14 5 4 38 38 H 1.07995 * 122.46933 * 0.05710 * 16 15 14 39 39 H 1.08006 * 122.64674 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.07617 * 0.02562 * 20 19 18 41 41 H 1.07993 * 119.93188 * 180.30033 * 21 20 19 42 42 H 1.07997 * 119.85394 * 179.71792 * 22 21 20 43 43 H 1.08000 * 119.92400 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.06934 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2870 3.4696 -1.1844 7 1 4.0437 4.5170 -1.2844 8 6 4.8317 2.7780 -2.2577 9 7 4.6765 3.2351 -3.4821 10 14 5.7850 1.1986 -1.9643 11 1 4.8800 0.0344 -2.1396 12 1 6.9032 1.1073 -2.9371 13 1 6.3296 1.1985 -0.5827 14 6 4.3021 3.5140 1.2702 15 6 3.0586 4.2579 1.6843 16 6 2.1303 3.7947 2.5264 17 6 1.0740 4.6509 2.7601 18 6 1.1431 5.8242 2.1002 19 6 0.1409 6.9081 2.1788 20 6 -0.9914 6.7589 2.9809 21 6 -1.9200 7.7765 3.0543 22 6 -1.7366 8.9384 2.3257 23 6 -0.6190 9.0904 1.5242 24 6 0.3205 8.0830 1.4470 25 16 2.6104 5.8659 1.1311 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9331 0.9288 0.8908 35 1 5.0568 2.7517 -4.2322 36 1 5.1239 4.2195 1.1482 37 1 4.5609 2.7838 2.0371 38 1 2.2019 2.8221 2.9902 39 1 0.2562 4.4008 3.4197 40 1 -1.1380 5.8507 3.5467 41 1 -2.7943 7.6644 3.6783 42 1 -2.4687 9.7302 2.3830 43 1 -0.4815 9.9999 0.9583 44 1 1.1925 8.2031 0.8213 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139414487.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:38 Heat of formation + Delta-G solvation = 51.209817 kcal Electronic energy + Delta-G solvation = -23399.796055 eV Core-core repulsion = 20215.161309 eV Total energy + Delta-G solvation = -3184.634746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.17104 -39.04215 -37.73142 -35.43370 -34.00975 -32.96765 -31.88073 -30.68607 -29.33696 -27.09511 -25.48957 -24.50899 -23.47148 -22.76628 -22.45437 -21.96311 -19.81187 -18.69239 -18.18014 -17.43015 -17.26490 -16.27833 -16.22272 -15.86008 -15.65236 -15.50080 -14.90091 -14.80275 -14.44799 -14.39509 -14.31343 -13.97923 -13.68135 -13.58221 -13.48662 -13.10587 -12.96473 -12.84870 -12.73065 -12.34316 -12.13719 -12.01593 -11.94665 -11.88183 -11.70257 -11.51519 -11.38095 -11.23192 -10.70795 -10.37218 -9.89604 -9.33920 -8.91731 -8.64376 -8.18050 -5.59492 -0.36953 0.47102 0.74796 0.85376 1.26536 1.31059 1.41309 1.52412 1.97128 2.42948 2.96081 3.06129 3.45057 3.70741 3.98349 4.06693 4.10518 4.12116 4.24092 4.29236 4.37555 4.42741 4.48691 4.51075 4.57999 4.70010 4.75267 4.79440 4.87646 4.96849 4.98553 5.00933 5.02823 5.11557 5.13612 5.24552 5.35665 5.41671 5.47683 5.54567 5.58341 5.58657 5.60443 5.76880 5.96694 6.06509 6.20432 6.98271 7.62315 8.03140 9.01232 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015221 B = 0.003908 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.117147 B = 7163.726043 C = 8000.978185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.125 4.125 4 C 0.131 3.869 5 N -0.605 5.605 6 C -0.252 4.252 7 H 0.040 0.960 8 C -0.018 4.018 9 N -0.950 5.950 10 Si 0.945 3.055 11 H -0.277 1.277 12 H -0.313 1.313 13 H -0.252 1.252 14 C 0.205 3.795 15 C -0.170 4.170 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.172 4.172 19 C -0.027 4.027 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.140 4.140 25 S 0.077 5.923 26 H 0.060 0.940 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.021 0.979 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.400 3.099 16.986 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.164 4.164 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.382 4.382 7 H 0.057 0.943 8 C -0.214 4.214 9 N -0.595 5.595 10 Si 0.774 3.226 11 H -0.204 1.204 12 H -0.242 1.242 13 H -0.176 1.176 14 C 0.078 3.922 15 C -0.291 4.291 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.290 4.290 19 C -0.029 4.029 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.159 4.159 25 S 0.344 5.656 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.175 0.825 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.173 0.827 42 H 0.170 0.830 43 H 0.159 0.841 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.608 4.112 15.825 20.052 hybrid contribution 0.208 -1.382 -0.167 1.408 sum -11.400 2.730 15.657 19.559 Atomic orbital electron populations 1.21706 0.94978 1.01990 1.01442 1.21506 0.96701 0.95976 1.01779 1.22010 0.96984 0.96649 1.00785 1.21380 0.93542 0.85123 0.99310 1.44212 1.75347 1.11716 1.01361 1.18579 1.35217 0.95410 0.89029 0.94266 1.26044 0.98976 1.01655 0.94758 1.70001 1.47368 1.43126 0.98962 0.85824 0.78243 0.80431 0.78063 1.20384 1.24192 1.17589 1.19561 0.90244 0.94678 0.87702 1.25828 1.04491 0.97153 1.01597 1.20107 0.93972 1.01874 1.01174 1.20469 1.00485 0.92409 1.01665 1.23200 1.00369 0.99970 1.05425 1.18299 0.93974 0.92104 0.98527 1.21433 0.92961 1.00507 0.98554 1.21461 0.99430 0.92990 0.99382 1.21601 0.97685 0.98680 0.96230 1.21335 0.94251 0.98852 0.99363 1.21367 1.00282 0.94249 0.99991 1.84535 1.17713 1.16652 1.46672 0.92076 0.94363 0.91315 0.93726 0.90276 0.91186 0.96000 0.95212 0.91089 0.92971 0.92781 0.88867 0.82514 0.82035 0.84179 0.82733 0.83041 0.84098 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.59 5.93 30.59 0.18 -3.41 16 3 C -0.12 -4.62 5.54 30.60 0.17 -4.45 16 4 C 0.13 5.31 4.53 86.38 0.39 5.70 16 5 N -0.61 -27.55 2.06 -706.35 -1.45 -29.00 16 6 C -0.25 -14.19 9.92 84.03 0.83 -13.35 16 7 H 0.04 2.48 8.06 -2.92 -0.02 2.46 16 8 C -0.02 -1.06 5.32 84.86 0.45 -0.61 16 9 N -0.95 -60.11 13.97 21.65 0.30 -59.80 16 10 Si 0.95 46.12 24.99 68.60 1.71 47.83 16 11 H -0.28 -12.94 6.69 99.48 0.67 -12.27 16 12 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 13 H -0.25 -11.44 7.11 99.48 0.71 -10.74 16 14 C 0.21 7.76 6.20 85.64 0.53 8.29 16 15 C -0.17 -6.02 5.94 24.64 0.15 -5.87 16 16 C -0.14 -4.15 8.39 21.16 0.18 -3.97 16 17 C -0.12 -3.31 9.65 21.41 0.21 -3.10 16 18 C -0.17 -5.42 6.37 24.02 0.15 -5.27 16 19 C -0.03 -0.77 5.87 -20.10 -0.12 -0.88 16 20 C -0.11 -2.51 9.54 22.52 0.21 -2.29 16 21 C -0.11 -2.00 10.03 22.23 0.22 -1.77 16 22 C -0.12 -2.16 10.04 22.33 0.22 -1.93 16 23 C -0.12 -2.58 10.03 22.23 0.22 -2.36 16 24 C -0.14 -3.87 9.60 22.53 0.22 -3.65 16 25 S 0.08 2.85 22.24 -56.49 -1.26 1.59 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.07 2.41 6.22 -2.38 -0.01 2.40 16 32 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.03 1.36 3.26 -2.39 -0.01 1.35 16 34 H 0.07 2.41 7.88 -2.39 -0.02 2.39 16 35 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 36 H 0.05 2.15 8.05 -2.39 -0.02 2.13 16 37 H 0.09 2.89 7.86 -2.38 -0.02 2.88 16 38 H 0.16 3.79 8.04 -2.91 -0.02 3.77 16 39 H 0.16 3.37 6.89 -2.91 -0.02 3.35 16 40 H 0.14 2.47 6.76 -2.91 -0.02 2.45 16 41 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 44 H 0.11 3.18 7.29 -2.91 -0.02 3.16 16 Total: -1.00 -69.32 368.64 5.18 -64.14 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.93 Total: 17.10 kcal Atomic # 6 Polarization: -46.81 SS G_CDS: 4.94 Total: -41.87 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -1.15 Total: -88.81 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.71 Total: 47.83 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.26 Total: 1.59 kcal Total: -69.32 5.18 -64.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139414487.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.353 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds