Wall clock time and date at job start Tue Mar 31 2020 11:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 N 1.46903 * 109.46978 * 179.85936 * 3 2 1 5 5 C 1.46904 * 110.99967 * 298.14843 * 4 3 2 6 6 C 1.50703 * 109.46839 * 293.18342 * 5 4 3 7 7 H 1.07999 * 120.00115 * 354.97348 * 6 5 4 8 8 C 1.37881 * 119.99637 * 174.96851 * 6 5 4 9 9 N 1.31504 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47164 * 60.00617 * 10 8 6 12 12 H 1.48500 * 109.46697 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47084 * 300.00228 * 10 8 6 14 14 C 1.46904 * 110.99898 * 62.09962 * 4 3 2 15 15 C 1.50700 * 109.47065 * 66.04779 * 14 4 3 16 16 C 1.33607 * 125.11829 * 89.97897 * 15 14 4 17 17 C 1.37970 * 115.06528 * 180.02562 * 16 15 14 18 18 C 1.34797 * 114.69887 * 0.02562 * 17 16 15 19 19 C 1.47831 * 125.26764 * 179.97438 * 18 17 16 20 20 C 1.39576 * 120.14095 * 359.73009 * 19 18 17 21 21 C 1.37967 * 119.84962 * 179.72445 * 20 19 18 22 22 C 1.38356 * 120.14087 * 0.58268 * 21 20 19 23 23 C 1.38357 * 120.29485 * 359.69684 * 22 21 20 24 24 C 1.37957 * 120.14434 * 359.97438 * 23 22 21 25 25 S 1.75857 * 125.11926 * 270.02358 * 15 14 4 26 26 H 1.08992 * 109.47502 * 300.00364 * 1 2 3 27 27 H 1.09007 * 109.46659 * 60.00434 * 1 2 3 28 28 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47447 * 240.00123 * 2 1 3 30 30 H 1.08998 * 109.46864 * 119.99554 * 2 1 3 31 31 H 1.08997 * 109.47046 * 59.86225 * 3 2 1 32 32 H 1.08999 * 109.46968 * 299.85901 * 3 2 1 33 33 H 1.08999 * 109.46983 * 53.18095 * 5 4 3 34 34 H 1.08998 * 109.46934 * 173.18510 * 5 4 3 35 35 H 0.96998 * 120.00375 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47304 * 306.04632 * 14 4 3 37 37 H 1.09000 * 109.46656 * 186.04589 * 14 4 3 38 38 H 1.07997 * 122.47330 * 0.05875 * 16 15 14 39 39 H 1.07991 * 122.65150 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.07576 * 0.02939 * 20 19 18 41 41 H 1.07992 * 119.92374 * 180.30180 * 21 20 19 42 42 H 1.08000 * 119.84926 * 179.72174 * 22 21 20 43 43 H 1.07997 * 119.92493 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.07353 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0034 5 6 4.0327 0.7966 1.2144 6 6 3.6877 1.6334 2.4193 7 1 3.2068 2.5919 2.2913 8 6 3.9860 1.1753 3.6851 9 7 4.5719 0.0084 3.8409 10 14 3.5590 2.2129 5.1786 11 1 2.0927 2.4449 5.2174 12 1 3.9809 1.5020 6.4122 13 1 4.2644 3.5170 5.0934 14 6 4.0383 0.7998 -1.2069 15 6 3.6826 1.6302 -2.4131 16 6 4.4331 2.6137 -2.9177 17 6 3.9068 3.2392 -4.0291 18 6 2.7137 2.7595 -4.4334 19 6 1.9425 3.2559 -5.5928 20 6 2.4375 4.3079 -6.3652 21 6 1.7154 4.7627 -7.4493 22 6 0.4976 4.1864 -7.7641 23 6 -0.0013 3.1472 -6.9990 24 6 0.7138 2.6785 -5.9164 25 16 2.2166 1.4514 -3.3678 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6747 1.9571 0.8887 32 1 1.6787 1.9556 -0.8912 33 1 3.5877 -0.1929 1.3197 34 1 5.1157 0.7015 1.1361 35 1 4.7821 -0.3138 4.7314 36 1 3.6042 -0.1947 -1.3096 37 1 5.1224 0.7169 -1.1297 38 1 5.3822 2.8977 -2.4877 39 1 4.4108 4.0491 -4.5353 40 1 3.3858 4.7615 -6.1177 41 1 2.0996 5.5733 -8.0506 42 1 -0.0657 4.5491 -8.6111 43 1 -0.9524 2.7014 -7.2504 44 1 0.3234 1.8669 -5.3202 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139414771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:12 Heat of formation + Delta-G solvation = 51.797789 kcal Electronic energy + Delta-G solvation = -23012.189807 eV Core-core repulsion = 19827.580558 eV Total energy + Delta-G solvation = -3184.609250 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.40630 -38.13206 -36.85868 -32.84932 -32.74930 -31.69896 -31.16007 -29.27720 -26.89949 -25.93266 -24.48760 -23.22567 -22.35070 -22.12281 -21.85055 -19.51207 -18.70368 -17.29323 -16.48488 -16.15948 -15.55795 -15.16326 -14.87084 -14.74241 -14.69982 -14.29227 -13.77868 -13.63159 -13.38061 -13.35861 -12.91100 -12.52097 -12.35801 -12.26623 -11.93013 -11.64688 -11.46604 -11.31241 -11.17455 -11.07634 -10.96891 -10.81604 -10.71735 -10.52065 -10.45086 -9.97575 -9.77665 -9.58062 -9.23968 -9.16772 -8.43886 -8.26197 -7.85554 -7.19672 -6.03316 -4.04280 0.48835 1.19882 1.67769 1.72873 2.14837 2.94071 3.33245 3.37246 3.40545 3.72264 4.42496 4.53029 4.70050 4.75355 4.90426 5.03764 5.14480 5.22428 5.30111 5.32409 5.49766 5.52063 5.57313 5.65379 5.70687 5.81479 5.83499 5.85141 6.04492 6.11940 6.16955 6.24772 6.29435 6.30897 6.39659 6.42572 6.50298 6.53234 6.69687 6.72931 6.76824 6.93876 7.26507 7.39463 7.79223 8.05638 8.16036 8.51921 9.03307 9.59775 11.07207 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.002905 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.571304 B = 9637.162516 C =10011.944693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.061 3.939 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.113 3.887 15 C -0.136 4.136 16 C -0.135 4.135 17 C -0.112 4.112 18 C -0.171 4.171 19 C -0.001 4.001 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.127 4.127 23 C -0.113 4.113 24 C -0.117 4.117 25 S 0.114 5.886 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.005 0.995 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.500 4.625 -21.384 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.068 4.068 4 N -0.251 5.251 5 C 0.065 3.935 6 C -0.543 4.543 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.017 4.017 15 C -0.254 4.254 16 C -0.165 4.165 17 C -0.143 4.143 18 C -0.288 4.288 19 C -0.002 4.002 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.131 4.131 24 C -0.136 4.136 25 S 0.381 5.619 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.022 0.978 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.496 4.002 -21.107 22.753 hybrid contribution 0.795 0.578 0.880 1.319 sum -6.701 4.580 -20.227 21.795 Atomic orbital electron populations 1.21645 0.96298 1.00737 1.01350 1.22165 0.95810 1.00289 1.01931 1.22169 0.88302 0.94575 1.01782 1.62417 1.06685 1.54418 1.01560 1.19812 0.95072 0.93451 0.85199 1.21082 1.38993 1.04311 0.89915 0.91959 1.24960 0.95403 0.95117 0.99003 1.69936 1.42206 1.18877 1.22858 0.86588 0.78803 0.80358 0.81839 1.20283 1.21401 1.20182 1.20659 1.00651 0.93294 0.87074 1.24754 0.96951 1.02595 1.01133 1.19962 1.02461 0.96963 0.97081 1.20257 0.94889 1.01477 0.97708 1.22897 0.99928 1.04291 1.01676 1.18115 0.93620 0.95580 0.92920 1.21199 1.00218 0.96275 0.95154 1.21068 0.95097 0.99975 0.97170 1.21194 0.96354 0.96999 1.00010 1.21043 0.99793 0.97049 0.95226 1.21238 0.94289 1.00212 0.97883 1.84085 1.22424 1.33639 1.21742 0.92645 0.93398 0.93560 0.93379 0.90476 0.89929 0.92594 0.97752 0.95647 0.92893 0.94165 0.89429 0.83998 0.84608 0.85670 0.85846 0.86092 0.85854 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.16 -2.92 5.28 -26.73 -0.14 -3.06 16 3 C 0.06 1.18 4.93 -3.82 -0.02 1.16 16 4 N -0.53 -11.13 4.69 -237.50 -1.11 -12.25 16 5 C 0.19 4.77 4.52 -4.97 -0.02 4.74 16 6 C -0.50 -13.90 8.39 -34.44 -0.29 -14.19 16 7 H 0.06 1.72 7.36 -52.49 -0.39 1.34 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.29 13.28 55.43 0.74 -25.55 16 10 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.11 2.02 5.25 -4.97 -0.03 1.99 16 15 C -0.14 -2.16 5.25 -35.93 -0.19 -2.34 16 16 C -0.14 -1.98 10.03 -41.30 -0.41 -2.39 16 17 C -0.11 -1.47 9.65 -40.90 -0.39 -1.87 16 18 C -0.17 -2.29 6.37 -36.88 -0.24 -2.53 16 19 C 0.00 -0.01 5.87 -104.98 -0.62 -0.62 16 20 C -0.11 -1.12 9.54 -39.18 -0.37 -1.50 16 21 C -0.11 -1.01 10.03 -39.64 -0.40 -1.41 16 22 C -0.13 -1.08 10.04 -39.49 -0.40 -1.48 16 23 C -0.11 -1.05 10.03 -39.64 -0.40 -1.45 16 24 C -0.12 -1.31 9.60 -39.19 -0.38 -1.68 16 25 S 0.11 1.61 20.75 -107.50 -2.23 -0.62 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.81 6.33 -51.93 -0.33 0.49 16 30 H 0.08 1.61 6.29 -51.93 -0.33 1.28 16 31 H 0.08 1.77 6.97 -51.93 -0.36 1.41 16 32 H 0.06 1.01 5.94 -51.93 -0.31 0.70 16 33 H 0.00 0.13 6.02 -51.93 -0.31 -0.19 16 34 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.04 0.71 6.07 -51.93 -0.32 0.39 16 37 H 0.09 1.53 7.92 -51.93 -0.41 1.12 16 38 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 39 H 0.14 1.45 6.89 -52.49 -0.36 1.08 16 40 H 0.13 1.11 6.76 -52.49 -0.35 0.75 16 41 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 1.29 7.29 -52.48 -0.38 0.91 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -29.61 366.47 -12.48 -42.09 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.36 Total: 1.22 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -4.02 Total: -26.93 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.38 Total: -37.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.23 Total: -0.62 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.61 -12.48 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139414771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.884 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds