Wall clock time and date at job start Tue Mar 31 2020 11:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 N 1.46903 * 109.46978 * 179.85936 * 3 2 1 5 5 C 1.46904 * 110.99967 * 298.14843 * 4 3 2 6 6 C 1.50703 * 109.46839 * 293.18342 * 5 4 3 7 7 H 1.07999 * 120.00115 * 354.97348 * 6 5 4 8 8 C 1.37881 * 119.99637 * 174.96851 * 6 5 4 9 9 N 1.31504 * 120.00147 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47164 * 60.00617 * 10 8 6 12 12 H 1.48500 * 109.46697 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.47084 * 300.00228 * 10 8 6 14 14 C 1.46904 * 110.99898 * 62.09962 * 4 3 2 15 15 C 1.50700 * 109.47065 * 66.04779 * 14 4 3 16 16 C 1.33607 * 125.11829 * 89.97897 * 15 14 4 17 17 C 1.37970 * 115.06528 * 180.02562 * 16 15 14 18 18 C 1.34797 * 114.69887 * 0.02562 * 17 16 15 19 19 C 1.47831 * 125.26764 * 179.97438 * 18 17 16 20 20 C 1.39576 * 120.14095 * 359.73009 * 19 18 17 21 21 C 1.37967 * 119.84962 * 179.72445 * 20 19 18 22 22 C 1.38356 * 120.14087 * 0.58268 * 21 20 19 23 23 C 1.38357 * 120.29485 * 359.69684 * 22 21 20 24 24 C 1.37957 * 120.14434 * 359.97438 * 23 22 21 25 25 S 1.75857 * 125.11926 * 270.02358 * 15 14 4 26 26 H 1.08992 * 109.47502 * 300.00364 * 1 2 3 27 27 H 1.09007 * 109.46659 * 60.00434 * 1 2 3 28 28 H 1.08998 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47447 * 240.00123 * 2 1 3 30 30 H 1.08998 * 109.46864 * 119.99554 * 2 1 3 31 31 H 1.08997 * 109.47046 * 59.86225 * 3 2 1 32 32 H 1.08999 * 109.46968 * 299.85901 * 3 2 1 33 33 H 1.08999 * 109.46983 * 53.18095 * 5 4 3 34 34 H 1.08998 * 109.46934 * 173.18510 * 5 4 3 35 35 H 0.96998 * 120.00375 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47304 * 306.04632 * 14 4 3 37 37 H 1.09000 * 109.46656 * 186.04589 * 14 4 3 38 38 H 1.07997 * 122.47330 * 0.05875 * 16 15 14 39 39 H 1.07991 * 122.65150 * 180.02562 * 17 16 15 40 40 H 1.07999 * 120.07576 * 0.02939 * 20 19 18 41 41 H 1.07992 * 119.92374 * 180.30180 * 21 20 19 42 42 H 1.08000 * 119.84926 * 179.72174 * 22 21 20 43 43 H 1.07997 * 119.92493 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.07353 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0034 5 6 4.0327 0.7966 1.2144 6 6 3.6877 1.6334 2.4193 7 1 3.2068 2.5919 2.2913 8 6 3.9860 1.1753 3.6851 9 7 4.5719 0.0084 3.8409 10 14 3.5590 2.2129 5.1786 11 1 2.0927 2.4449 5.2174 12 1 3.9809 1.5020 6.4122 13 1 4.2644 3.5170 5.0934 14 6 4.0383 0.7998 -1.2069 15 6 3.6826 1.6302 -2.4131 16 6 4.4331 2.6137 -2.9177 17 6 3.9068 3.2392 -4.0291 18 6 2.7137 2.7595 -4.4334 19 6 1.9425 3.2559 -5.5928 20 6 2.4375 4.3079 -6.3652 21 6 1.7154 4.7627 -7.4493 22 6 0.4976 4.1864 -7.7641 23 6 -0.0013 3.1472 -6.9990 24 6 0.7138 2.6785 -5.9164 25 16 2.2166 1.4514 -3.3678 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6747 1.9571 0.8887 32 1 1.6787 1.9556 -0.8912 33 1 3.5877 -0.1929 1.3197 34 1 5.1157 0.7015 1.1361 35 1 4.7821 -0.3138 4.7314 36 1 3.6042 -0.1947 -1.3096 37 1 5.1224 0.7169 -1.1297 38 1 5.3822 2.8977 -2.4877 39 1 4.4108 4.0491 -4.5353 40 1 3.3858 4.7615 -6.1177 41 1 2.0996 5.5733 -8.0506 42 1 -0.0657 4.5491 -8.6111 43 1 -0.9524 2.7014 -7.2504 44 1 0.3234 1.8669 -5.3202 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139414771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:12 Heat of formation + Delta-G solvation = 37.665995 kcal Electronic energy + Delta-G solvation = -23012.802608 eV Core-core repulsion = 19827.580558 eV Total energy + Delta-G solvation = -3185.222050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.20745 -39.54543 -38.10551 -34.88140 -33.94707 -32.97438 -31.87567 -30.64563 -28.63169 -27.21985 -25.97733 -24.37356 -23.76241 -23.28931 -22.77241 -21.10247 -19.73186 -18.49522 -18.11081 -17.37359 -16.94184 -16.61033 -16.33960 -15.94136 -15.70703 -15.53240 -15.29340 -14.80022 -14.37126 -14.31830 -14.22077 -13.95029 -13.68779 -13.36490 -13.31711 -13.12015 -12.78206 -12.66021 -12.60381 -12.54683 -12.32088 -12.27271 -12.21897 -12.01218 -11.82291 -11.54448 -11.36322 -11.31045 -10.60001 -10.50154 -9.88368 -9.38146 -8.97029 -8.79791 -8.18541 -6.27785 -0.46833 0.48409 0.59804 0.77523 1.03845 1.40317 1.42803 1.50629 1.88583 2.40702 2.96033 3.13845 3.42207 3.64440 3.83093 4.01772 4.05797 4.08418 4.10890 4.28545 4.30100 4.45598 4.47272 4.54671 4.56581 4.63905 4.70336 4.77067 4.83811 4.94135 5.01306 5.07254 5.12376 5.14273 5.20143 5.29480 5.36440 5.39458 5.46798 5.51213 5.57422 5.60249 5.67189 5.67630 6.06431 6.06677 6.31850 6.60476 6.87447 7.41108 8.91426 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.002905 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.571304 B = 9637.162516 C =10011.944693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.154 4.154 3 C 0.066 3.934 4 N -0.537 5.537 5 C 0.206 3.794 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.270 1.270 14 C 0.120 3.880 15 C -0.171 4.171 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.158 4.158 19 C -0.031 4.031 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.132 4.132 25 S 0.118 5.882 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.058 0.942 32 H 0.074 0.926 33 H -0.017 1.017 34 H 0.000 1.000 35 H 0.264 0.736 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 6.449 -23.630 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C -0.062 4.062 4 N -0.260 5.260 5 C 0.080 3.920 6 C -0.557 4.557 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.195 1.195 14 C -0.010 4.010 15 C -0.288 4.288 16 C -0.158 4.158 17 C -0.155 4.155 18 C -0.276 4.276 19 C -0.033 4.033 20 C -0.134 4.134 21 C -0.136 4.136 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.151 4.151 25 S 0.385 5.615 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.001 0.999 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.163 0.837 39 H 0.179 0.821 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.030 5.827 -23.368 25.721 hybrid contribution 1.222 0.068 1.358 1.829 sum -7.808 5.895 -22.010 24.087 Atomic orbital electron populations 1.21611 0.93743 1.02057 1.02069 1.22034 0.98023 0.98754 1.00514 1.22104 0.87268 0.95496 1.01340 1.62288 1.07843 1.54457 1.01377 1.19434 0.93361 0.92448 0.86778 1.21359 1.38865 1.04327 0.91126 0.92439 1.25809 0.95160 0.96256 1.02022 1.70059 1.43176 1.20457 1.23605 0.85538 0.78890 0.78742 0.78078 1.19387 1.20828 1.19511 1.20526 1.00211 0.93594 0.86625 1.24481 0.98902 1.03939 1.01527 1.20167 1.02316 0.96192 0.97171 1.20439 0.95123 1.02376 0.97542 1.23206 0.99853 1.03040 1.01477 1.18248 0.94430 0.97244 0.93415 1.21445 1.00896 0.95728 0.95335 1.21440 0.95016 1.00374 0.96723 1.21618 0.96235 0.95979 1.00187 1.21355 1.00500 0.97262 0.94588 1.21379 0.94424 1.00481 0.98772 1.83937 1.21449 1.34310 1.21775 0.93103 0.91452 0.91983 0.92499 0.94092 0.92342 0.90791 0.99900 0.98159 0.92754 0.94232 0.89969 0.83692 0.82066 0.84526 0.83175 0.83252 0.83747 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.15 -5.65 5.28 30.60 0.16 -5.49 16 3 C 0.07 2.65 4.93 86.30 0.43 3.07 16 4 N -0.54 -23.58 4.69 -905.32 -4.24 -27.82 16 5 C 0.21 10.92 4.52 85.56 0.39 11.31 16 6 C -0.52 -29.54 8.39 25.60 0.21 -29.32 16 7 H 0.06 3.26 7.36 -2.91 -0.02 3.24 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -56.06 13.28 21.45 0.28 -55.77 16 10 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.12 4.45 5.25 85.56 0.45 4.89 16 15 C -0.17 -5.46 5.25 24.64 0.13 -5.33 16 16 C -0.13 -3.72 10.03 21.16 0.21 -3.51 16 17 C -0.12 -3.11 9.65 21.42 0.21 -2.91 16 18 C -0.16 -4.07 6.37 24.02 0.15 -3.92 16 19 C -0.03 -0.71 5.87 -20.10 -0.12 -0.83 16 20 C -0.11 -2.08 9.54 22.53 0.21 -1.86 16 21 C -0.12 -1.66 10.03 22.23 0.22 -1.44 16 22 C -0.12 -1.63 10.04 22.33 0.22 -1.41 16 23 C -0.12 -1.88 10.03 22.23 0.22 -1.66 16 24 C -0.13 -2.71 9.60 22.52 0.22 -2.50 16 25 S 0.12 3.27 20.75 -56.49 -1.17 2.10 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.96 6.33 -2.39 -0.02 1.95 16 30 H 0.04 1.79 6.29 -2.39 -0.02 1.78 16 31 H 0.06 2.59 6.97 -2.39 -0.02 2.57 16 32 H 0.07 2.67 5.94 -2.39 -0.01 2.66 16 33 H -0.02 -0.94 6.02 -2.39 -0.01 -0.96 16 34 H 0.00 0.02 7.92 -2.39 -0.02 0.00 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.04 1.45 6.07 -2.39 -0.01 1.44 16 37 H 0.08 3.05 7.92 -2.39 -0.02 3.03 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.16 3.09 6.89 -2.92 -0.02 3.07 16 40 H 0.14 2.05 6.76 -2.91 -0.02 2.03 16 41 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.12 2.40 7.29 -2.91 -0.02 2.38 16 Total: -1.00 -65.39 366.47 2.38 -63.00 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.99 Total: 15.18 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.50 Total: -43.42 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.96 Total: -83.59 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.17 Total: 2.10 kcal Total: -65.39 2.38 -63.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139414771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.670 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds