Wall clock time and date at job start Tue Mar 31 2020 11:11:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47058 * 2 1
4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1
5 5 N 1.46500 * 109.46926 * 179.97438 * 4 3 2
6 6 C 1.36931 * 120.00516 * 267.33950 * 5 4 3
7 7 H 1.08001 * 119.99554 * 12.95778 * 6 5 4
8 8 C 1.38808 * 120.00352 * 192.95351 * 6 5 4
9 9 N 1.31620 * 119.99858 * 24.99912 * 8 6 5
10 10 Si 1.86798 * 120.00160 * 204.99350 * 8 6 5
11 11 H 1.48497 * 109.47150 * 0.02562 * 10 8 6
12 12 H 1.48504 * 109.47322 * 120.00193 * 10 8 6
13 13 H 1.48500 * 109.47594 * 240.00103 * 10 8 6
14 14 C 1.46504 * 119.99765 * 87.34478 * 5 4 3
15 15 C 1.50699 * 109.47349 * 84.35546 * 14 5 4
16 16 C 1.37981 * 120.07466 * 6.00822 * 15 14 5
17 17 C 1.38329 * 120.14358 * 180.02562 * 16 15 14
18 18 C 1.38375 * 120.29460 * 0.02562 * 17 16 15
19 19 C 1.37939 * 120.14340 * 0.02562 * 18 17 16
20 20 C 1.39557 * 120.07132 * 186.04827 * 15 14 5
21 21 C 1.47826 * 120.14671 * 0.02562 * 20 15 14
22 22 C 1.34789 * 125.27482 * 124.21694 * 21 20 15
23 23 C 1.37967 * 114.70795 * 179.97438 * 22 21 20
24 24 C 1.33617 * 115.06082 * 0.02562 * 23 22 21
25 25 S 1.75862 * 109.76082 * 359.73193 * 24 23 22
26 26 H 1.08996 * 109.47281 * 60.00165 * 1 2 3
27 27 H 1.09003 * 109.46898 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.47322 * 299.99473 * 1 2 3
29 29 H 1.09000 * 109.47056 * 240.00047 * 2 1 3
30 30 H 1.08996 * 109.47281 * 119.99835 * 2 1 3
31 31 H 1.09000 * 109.46624 * 60.00100 * 3 2 1
32 32 H 1.08996 * 109.46940 * 300.00044 * 3 2 1
33 33 H 1.09000 * 109.47056 * 60.00047 * 4 3 2
34 34 H 1.08996 * 109.47281 * 299.99835 * 4 3 2
35 35 H 0.97005 * 119.99864 * 180.02562 * 9 8 6
36 36 H 1.09003 * 109.46795 * 324.35690 * 14 5 4
37 37 H 1.09001 * 109.47245 * 204.36067 * 14 5 4
38 38 H 1.08005 * 119.92302 * 0.02562 * 16 15 14
39 39 H 1.07998 * 119.85011 * 180.28120 * 17 16 15
40 40 H 1.08006 * 119.92642 * 179.97438 * 18 17 16
41 41 H 1.08007 * 120.07243 * 179.97438 * 19 18 17
42 42 H 1.08003 * 122.64547 * 0.02748 * 22 21 20
43 43 H 1.07998 * 122.46374 * 180.02562 * 23 22 21
44 44 H 1.07996 * 125.11280 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 7 4.0582 2.8238 -0.0013
6 6 4.3379 3.4507 -1.1861
7 1 4.0072 3.0163 -2.1180
8 6 5.0461 4.6445 -1.1895
9 7 5.8560 4.9320 -0.1926
10 14 4.8500 5.8428 -2.6089
11 1 3.8878 5.2889 -3.5950
12 1 4.3402 7.1396 -2.0952
13 1 6.1657 6.0531 -3.2647
14 6 4.2475 3.5343 1.2659
15 6 5.6007 3.1942 1.8353
16 6 6.4861 2.4291 1.1043
17 6 7.7283 2.1156 1.6258
18 6 8.0915 2.5660 2.8828
19 6 7.2154 3.3308 3.6244
20 6 5.9607 3.6519 3.1036
21 6 5.0167 4.4709 3.8930
22 6 4.5881 4.1820 5.1379
23 6 3.7066 5.0993 5.6717
24 6 3.4123 6.1312 4.8755
25 16 4.2843 5.9772 3.3560
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5137 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.6766 1.9563 0.8900
32 1 1.6766 1.9563 -0.8900
33 1 3.9329 0.9288 -0.8909
34 1 3.9337 0.9286 0.8891
35 1 6.3507 5.7664 -0.1947
36 1 3.4712 3.2345 1.9699
37 1 4.1857 4.6087 1.0927
38 1 6.2085 2.0741 0.1227
39 1 8.4194 1.5202 1.0476
40 1 9.0628 2.3174 3.2844
41 1 7.4999 3.6814 4.6056
42 1 4.9101 3.3023 5.6754
43 1 3.2855 4.9912 6.6603
44 1 2.7437 6.9405 5.1290
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001141096902.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:23
Heat of formation + Delta-G solvation = 72.399372 kcal
Electronic energy + Delta-G solvation = -24315.718990 eV
Core-core repulsion = 21132.003092 eV
Total energy + Delta-G solvation = -3183.715898 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.135 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-38.74916 -37.03028 -36.19592 -34.18742 -31.66928 -31.23794 -30.27827 -27.94438
-27.54127 -25.54600 -23.88797 -23.75123 -21.62938 -21.03475 -20.54667 -19.71754
-18.60595 -17.14311 -16.75699 -15.34812 -15.04344 -14.96254 -14.89874 -14.15235
-13.76077 -13.68022 -13.56991 -13.07626 -12.70266 -12.57313 -12.42803 -12.25646
-12.14371 -12.06666 -11.87574 -11.52732 -11.22243 -11.08045 -10.77494 -10.71864
-10.60049 -10.51216 -10.28968 -10.22720 -10.12079 -10.04052 -9.82040 -9.69978
-8.56684 -8.51096 -7.99701 -7.69425 -7.36007 -6.92667 -5.78800 -3.13004
1.27358 1.91747 2.41756 2.47726 2.68410 3.18482 3.37619 3.48095
3.48657 4.48816 4.81536 5.17030 5.27316 5.34950 5.37500 5.38438
5.54826 5.56413 5.70729 5.80813 5.85648 5.91885 5.92216 6.08225
6.12191 6.24318 6.27881 6.33103 6.37162 6.42806 6.52612 6.55634
6.59242 6.63642 6.76535 6.88626 6.90505 6.96484 7.00427 7.10319
7.30939 7.35324 7.51793 7.77876 7.86233 8.01457 8.30567 9.16146
9.82185 10.28345 11.23846
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.008475 B = 0.006019 C = 0.005195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3303.104909 B = 4651.052652 C = 5388.816322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.122 4.122
3 C -0.138 4.138
4 C 0.149 3.851
5 N -0.595 5.595
6 C -0.259 4.259
7 H 0.073 0.927
8 C 0.006 3.994
9 N -0.885 5.885
10 Si 0.888 3.112
11 H -0.280 1.280
12 H -0.290 1.290
13 H -0.293 1.293
14 C 0.200 3.800
15 C 0.006 3.994
16 C -0.058 4.058
17 C -0.127 4.127
18 C -0.151 4.151
19 C -0.107 4.107
20 C -0.063 4.063
21 C -0.101 4.101
22 C -0.156 4.156
23 C -0.133 4.133
24 C -0.250 4.250
25 S 0.146 5.854
26 H 0.051 0.949
27 H 0.045 0.955
28 H 0.050 0.950
29 H 0.056 0.944
30 H 0.055 0.945
31 H 0.051 0.949
32 H 0.059 0.941
33 H 0.047 0.953
34 H 0.034 0.966
35 H 0.253 0.747
36 H 0.023 0.977
37 H 0.103 0.897
38 H 0.131 0.869
39 H 0.104 0.896
40 H 0.105 0.895
41 H 0.106 0.894
42 H 0.134 0.866
43 H 0.130 0.870
44 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.264 -3.837 8.309 9.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.161 4.161
3 C -0.178 4.178
4 C 0.022 3.978
5 N -0.315 5.315
6 C -0.388 4.388
7 H 0.091 0.909
8 C -0.193 4.193
9 N -0.529 5.529
10 Si 0.718 3.282
11 H -0.206 1.206
12 H -0.217 1.217
13 H -0.221 1.221
14 C 0.073 3.927
15 C 0.002 3.998
16 C -0.077 4.077
17 C -0.146 4.146
18 C -0.170 4.170
19 C -0.127 4.127
20 C -0.066 4.066
21 C -0.219 4.219
22 C -0.186 4.186
23 C -0.164 4.164
24 C -0.386 4.386
25 S 0.414 5.586
26 H 0.070 0.930
27 H 0.065 0.935
28 H 0.069 0.931
29 H 0.075 0.925
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.078 0.922
33 H 0.066 0.934
34 H 0.052 0.948
35 H 0.063 0.937
36 H 0.041 0.959
37 H 0.121 0.879
38 H 0.149 0.851
39 H 0.122 0.878
40 H 0.123 0.877
41 H 0.124 0.876
42 H 0.151 0.849
43 H 0.148 0.852
44 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -3.133 -2.749 6.996 8.143
hybrid contribution 0.018 0.081 0.566 0.572
sum -3.115 -2.668 7.562 8.603
Atomic orbital electron populations
1.21763 0.96720 1.00619 1.01564 1.21495 0.95085 0.98250 1.01240
1.22202 0.99334 0.94580 1.01651 1.20804 0.91513 0.86517 0.98972
1.44042 1.75528 1.09262 1.02664 1.19188 1.30113 1.03853 0.85641
0.90912 1.24702 0.97213 0.99821 0.97542 1.70166 1.25935 1.24112
1.32666 0.86448 0.77374 0.82044 0.82306 1.20565 1.21652 1.22080
1.19853 0.88843 0.99059 0.84902 1.20821 0.98562 0.90918 0.89486
1.20905 0.91825 0.95902 0.99025 1.21139 0.97122 1.00836 0.95503
1.20673 0.98871 1.01555 0.95859 1.20806 0.93184 0.99704 0.99041
1.17819 0.93301 1.00767 0.94697 1.23069 1.02791 0.98725 0.97343
1.20231 1.01422 1.01833 0.95155 1.19924 1.00603 0.95060 1.00832
1.25794 1.08620 1.04618 0.99577 1.84890 1.39850 1.19225 1.14682
0.92996 0.93547 0.93101 0.92515 0.92671 0.93038 0.92185 0.93419
0.94803 0.93664 0.95860 0.87925 0.85084 0.87782 0.87673 0.87602
0.84867 0.85198 0.82708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16
2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16
3 C -0.14 -2.37 5.54 -26.73 -0.15 -2.51 16
4 C 0.15 2.90 5.13 -4.04 -0.02 2.87 16
5 N -0.59 -13.63 1.35 -174.61 -0.24 -13.87 16
6 C -0.26 -6.55 9.10 -15.06 -0.14 -6.68 16
7 H 0.07 1.85 7.94 -52.49 -0.42 1.43 16
8 C 0.01 0.15 4.82 -17.43 -0.08 0.07 16
9 N -0.88 -23.21 8.81 55.49 0.49 -22.72 16
10 Si 0.89 20.96 29.62 -169.99 -5.04 15.93 16
11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16
12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
14 C 0.20 4.54 3.95 -5.19 -0.02 4.52 16
15 C 0.01 0.14 4.51 -104.22 -0.47 -0.33 16
16 C -0.06 -1.28 8.12 -39.64 -0.32 -1.60 16
17 C -0.13 -2.47 10.04 -39.50 -0.40 -2.86 16
18 C -0.15 -2.71 10.03 -39.64 -0.40 -3.11 16
19 C -0.11 -1.98 9.73 -39.19 -0.38 -2.36 16
20 C -0.06 -1.28 5.73 -104.98 -0.60 -1.88 16
21 C -0.10 -1.88 5.14 -36.88 -0.19 -2.06 16
22 C -0.16 -2.50 10.04 -40.90 -0.41 -2.91 16
23 C -0.13 -1.90 10.16 -41.30 -0.42 -2.32 16
24 C -0.25 -3.68 11.22 29.11 0.33 -3.35 16
25 S 0.15 2.61 21.46 -107.50 -2.31 0.31 16
26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
33 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16
34 H 0.03 0.64 8.09 -51.93 -0.42 0.22 16
35 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16
36 H 0.02 0.52 7.98 -51.93 -0.41 0.11 16
37 H 0.10 2.54 4.97 -51.93 -0.26 2.29 16
38 H 0.13 3.13 6.24 -52.48 -0.33 2.80 16
39 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16
40 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16
41 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16
42 H 0.13 1.92 8.06 -52.48 -0.42 1.49 16
43 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16
44 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16
LS Contribution 368.57 15.07 5.55 5.55
Total: -1.00 -26.38 368.57 -11.88 -38.27
By element:
Atomic # 1 Polarization: 11.30 SS G_CDS: -6.88 Total: 4.42 kcal
Atomic # 6 Polarization: -24.42 SS G_CDS: -3.46 Total: -27.88 kcal
Atomic # 7 Polarization: -36.85 SS G_CDS: 0.25 Total: -36.59 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.93 kcal
Atomic # 16 Polarization: 2.61 SS G_CDS: -2.31 Total: 0.31 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -26.38 -11.88 -38.27 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141096902.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.666 kcal
(2) G-P(sol) polarization free energy of solvation -26.384 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.883 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.399 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds