Wall clock time and date at job start Tue Mar 31 2020 11:11:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47058 * 2 1
4 4 C 1.52998 * 109.47058 * 180.02562 * 3 2 1
5 5 N 1.46500 * 109.46926 * 179.97438 * 4 3 2
6 6 C 1.36931 * 120.00516 * 267.33950 * 5 4 3
7 7 H 1.08001 * 119.99554 * 12.95778 * 6 5 4
8 8 C 1.38808 * 120.00352 * 192.95351 * 6 5 4
9 9 N 1.31620 * 119.99858 * 24.99912 * 8 6 5
10 10 Si 1.86798 * 120.00160 * 204.99350 * 8 6 5
11 11 H 1.48497 * 109.47150 * 0.02562 * 10 8 6
12 12 H 1.48504 * 109.47322 * 120.00193 * 10 8 6
13 13 H 1.48500 * 109.47594 * 240.00103 * 10 8 6
14 14 C 1.46504 * 119.99765 * 87.34478 * 5 4 3
15 15 C 1.50699 * 109.47349 * 84.35546 * 14 5 4
16 16 C 1.37981 * 120.07466 * 6.00822 * 15 14 5
17 17 C 1.38329 * 120.14358 * 180.02562 * 16 15 14
18 18 C 1.38375 * 120.29460 * 0.02562 * 17 16 15
19 19 C 1.37939 * 120.14340 * 0.02562 * 18 17 16
20 20 C 1.39557 * 120.07132 * 186.04827 * 15 14 5
21 21 C 1.47826 * 120.14671 * 0.02562 * 20 15 14
22 22 C 1.34789 * 125.27482 * 124.21694 * 21 20 15
23 23 C 1.37967 * 114.70795 * 179.97438 * 22 21 20
24 24 C 1.33617 * 115.06082 * 0.02562 * 23 22 21
25 25 S 1.75862 * 109.76082 * 359.73193 * 24 23 22
26 26 H 1.08996 * 109.47281 * 60.00165 * 1 2 3
27 27 H 1.09003 * 109.46898 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.47322 * 299.99473 * 1 2 3
29 29 H 1.09000 * 109.47056 * 240.00047 * 2 1 3
30 30 H 1.08996 * 109.47281 * 119.99835 * 2 1 3
31 31 H 1.09000 * 109.46624 * 60.00100 * 3 2 1
32 32 H 1.08996 * 109.46940 * 300.00044 * 3 2 1
33 33 H 1.09000 * 109.47056 * 60.00047 * 4 3 2
34 34 H 1.08996 * 109.47281 * 299.99835 * 4 3 2
35 35 H 0.97005 * 119.99864 * 180.02562 * 9 8 6
36 36 H 1.09003 * 109.46795 * 324.35690 * 14 5 4
37 37 H 1.09001 * 109.47245 * 204.36067 * 14 5 4
38 38 H 1.08005 * 119.92302 * 0.02562 * 16 15 14
39 39 H 1.07998 * 119.85011 * 180.28120 * 17 16 15
40 40 H 1.08006 * 119.92642 * 179.97438 * 18 17 16
41 41 H 1.08007 * 120.07243 * 179.97438 * 19 18 17
42 42 H 1.08003 * 122.64547 * 0.02748 * 22 21 20
43 43 H 1.07998 * 122.46374 * 180.02562 * 23 22 21
44 44 H 1.07996 * 125.11280 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4425 -0.0006
5 7 4.0582 2.8238 -0.0013
6 6 4.3379 3.4507 -1.1861
7 1 4.0072 3.0163 -2.1180
8 6 5.0461 4.6445 -1.1895
9 7 5.8560 4.9320 -0.1926
10 14 4.8500 5.8428 -2.6089
11 1 3.8878 5.2889 -3.5950
12 1 4.3402 7.1396 -2.0952
13 1 6.1657 6.0531 -3.2647
14 6 4.2475 3.5343 1.2659
15 6 5.6007 3.1942 1.8353
16 6 6.4861 2.4291 1.1043
17 6 7.7283 2.1156 1.6258
18 6 8.0915 2.5660 2.8828
19 6 7.2154 3.3308 3.6244
20 6 5.9607 3.6519 3.1036
21 6 5.0167 4.4709 3.8930
22 6 4.5881 4.1820 5.1379
23 6 3.7066 5.0993 5.6717
24 6 3.4123 6.1312 4.8755
25 16 4.2843 5.9772 3.3560
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3634 0.5137 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.6766 1.9563 0.8900
32 1 1.6766 1.9563 -0.8900
33 1 3.9329 0.9288 -0.8909
34 1 3.9337 0.9286 0.8891
35 1 6.3507 5.7664 -0.1947
36 1 3.4712 3.2345 1.9699
37 1 4.1857 4.6087 1.0927
38 1 6.2085 2.0741 0.1227
39 1 8.4194 1.5202 1.0476
40 1 9.0628 2.3174 3.2844
41 1 7.4999 3.6814 4.6056
42 1 4.9101 3.3023 5.6754
43 1 3.2855 4.9912 6.6603
44 1 2.7437 6.9405 5.1290
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001141096902.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:22
Heat of formation + Delta-G solvation = 64.305663 kcal
Electronic energy + Delta-G solvation = -24316.069960 eV
Core-core repulsion = 21132.003092 eV
Total energy + Delta-G solvation = -3184.066868 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.135 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-40.25854 -38.36088 -37.73928 -35.61956 -33.24027 -32.91471 -31.78728 -29.40010
-28.93664 -27.28119 -25.47688 -25.04794 -23.09103 -22.49186 -21.91403 -21.35104
-19.84810 -18.66687 -18.42365 -16.89540 -16.77624 -16.27898 -16.25956 -15.77103
-15.48635 -15.18117 -14.84771 -14.62874 -14.07545 -13.97909 -13.76650 -13.65341
-13.53367 -13.38767 -13.19481 -13.05342 -12.90061 -12.75183 -12.41061 -12.23116
-12.11092 -12.00603 -11.86473 -11.78478 -11.56440 -11.51036 -11.42521 -11.27622
-10.45305 -9.88659 -9.34688 -9.22105 -8.85143 -8.76585 -7.74634 -5.09131
-0.03364 0.56900 0.95476 1.11133 1.37172 1.44636 1.51115 1.56987
1.97008 2.55680 3.25016 3.35619 3.63422 3.94507 4.15187 4.25533
4.29925 4.33752 4.36018 4.44883 4.47941 4.56807 4.67772 4.77029
4.84197 4.86052 4.91434 5.00919 5.05635 5.06699 5.13051 5.18740
5.25036 5.32732 5.36185 5.44187 5.49882 5.53773 5.60621 5.64668
5.69130 5.74887 5.82115 5.94874 6.25069 6.36964 6.47171 7.21127
7.94417 8.37572 9.23315
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.008475 B = 0.006019 C = 0.005195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3303.104909 B = 4651.052652 C = 5388.816322
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.117 4.117
3 C -0.126 4.126
4 C 0.150 3.850
5 N -0.605 5.605
6 C -0.261 4.261
7 H 0.066 0.934
8 C -0.032 4.032
9 N -0.891 5.891
10 Si 0.936 3.064
11 H -0.277 1.277
12 H -0.297 1.297
13 H -0.300 1.300
14 C 0.213 3.787
15 C -0.016 4.016
16 C -0.079 4.079
17 C -0.136 4.136
18 C -0.143 4.143
19 C -0.110 4.110
20 C -0.069 4.069
21 C -0.131 4.131
22 C -0.141 4.141
23 C -0.132 4.132
24 C -0.230 4.230
25 S 0.074 5.926
26 H 0.049 0.951
27 H 0.067 0.933
28 H 0.050 0.950
29 H 0.062 0.938
30 H 0.063 0.937
31 H 0.041 0.959
32 H 0.044 0.956
33 H 0.044 0.956
34 H 0.036 0.964
35 H 0.242 0.758
36 H 0.018 0.982
37 H 0.080 0.920
38 H 0.102 0.898
39 H 0.122 0.878
40 H 0.141 0.859
41 H 0.132 0.868
42 H 0.152 0.848
43 H 0.169 0.831
44 H 0.185 0.815
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.643 -4.596 10.604 12.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.155 4.155
3 C -0.166 4.166
4 C 0.024 3.976
5 N -0.326 5.326
6 C -0.391 4.391
7 H 0.084 0.916
8 C -0.229 4.229
9 N -0.536 5.536
10 Si 0.767 3.233
11 H -0.202 1.202
12 H -0.224 1.224
13 H -0.228 1.228
14 C 0.087 3.913
15 C -0.020 4.020
16 C -0.097 4.097
17 C -0.154 4.154
18 C -0.161 4.161
19 C -0.130 4.130
20 C -0.071 4.071
21 C -0.248 4.248
22 C -0.171 4.171
23 C -0.162 4.162
24 C -0.365 4.365
25 S 0.341 5.659
26 H 0.068 0.932
27 H 0.086 0.914
28 H 0.069 0.931
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.060 0.940
32 H 0.063 0.937
33 H 0.062 0.938
34 H 0.054 0.946
35 H 0.052 0.948
36 H 0.036 0.964
37 H 0.098 0.902
38 H 0.120 0.880
39 H 0.140 0.860
40 H 0.159 0.841
41 H 0.150 0.850
42 H 0.170 0.830
43 H 0.187 0.813
44 H 0.202 0.798
Dipole moment (debyes) X Y Z Total
from point charges -3.527 -3.535 9.291 10.548
hybrid contribution 0.120 0.285 -0.045 0.312
sum -3.407 -3.250 9.246 10.376
Atomic orbital electron populations
1.21732 0.95109 1.02009 1.01506 1.21446 0.96453 0.95663 1.01935
1.22028 0.97339 0.96832 1.00351 1.20892 0.92933 0.84939 0.98828
1.44173 1.75791 1.10437 1.02215 1.19280 1.29353 1.04105 0.86318
0.91568 1.25167 0.97633 1.00908 0.99241 1.70327 1.26344 1.23414
1.33505 0.85690 0.76723 0.80319 0.80557 1.20152 1.22411 1.22791
1.19590 0.89574 0.97619 0.84526 1.20707 0.98147 0.92304 0.90827
1.20747 0.93407 0.97370 0.98207 1.21362 0.96404 1.01124 0.96536
1.21055 1.00092 1.00098 0.94872 1.21167 0.92440 0.99270 1.00150
1.18058 0.94410 1.00385 0.94254 1.23019 1.04367 0.99024 0.98402
1.20590 1.00310 1.02241 0.94004 1.20303 0.99733 0.93977 1.02201
1.26098 1.07768 1.05512 0.97131 1.85130 1.41998 1.20627 1.18146
0.93194 0.91419 0.93084 0.91927 0.91870 0.93980 0.93748 0.93766
0.94584 0.94838 0.96422 0.90248 0.88008 0.85988 0.84095 0.85043
0.82999 0.81321 0.79765
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.35 9.91 71.98 0.71 -2.64 16
2 C -0.12 -3.14 5.93 30.59 0.18 -2.96 16
3 C -0.13 -4.38 5.54 30.59 0.17 -4.21 16
4 C 0.15 6.02 5.13 86.38 0.44 6.46 16
5 N -0.61 -28.91 1.35 -706.35 -0.95 -29.87 16
6 C -0.26 -13.69 9.10 84.03 0.77 -12.92 16
7 H 0.07 3.48 7.94 -2.91 -0.02 3.46 16
8 C -0.03 -1.72 4.82 84.86 0.41 -1.31 16
9 N -0.89 -48.61 8.81 21.65 0.19 -48.42 16
10 Si 0.94 44.51 29.62 68.60 2.03 46.54 16
11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16
13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16
14 C 0.21 10.09 3.95 85.63 0.34 10.42 16
15 C -0.02 -0.72 4.51 -19.61 -0.09 -0.81 16
16 C -0.08 -3.56 8.12 22.23 0.18 -3.38 16
17 C -0.14 -5.20 10.04 22.32 0.22 -4.98 16
18 C -0.14 -4.84 10.03 22.23 0.22 -4.62 16
19 C -0.11 -3.88 9.73 22.52 0.22 -3.66 16
20 C -0.07 -2.76 5.73 -20.10 -0.12 -2.88 16
21 C -0.13 -4.76 5.14 24.02 0.12 -4.64 16
22 C -0.14 -4.16 10.04 21.41 0.21 -3.95 16
23 C -0.13 -3.31 10.16 21.16 0.21 -3.10 16
24 C -0.23 -6.21 11.22 66.77 0.75 -5.46 16
25 S 0.07 2.69 21.46 -56.49 -1.21 1.47 16
26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
31 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16
32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
33 H 0.04 1.77 8.02 -2.39 -0.02 1.75 16
34 H 0.04 1.41 8.09 -2.39 -0.02 1.39 16
35 H 0.24 13.38 8.31 -92.70 -0.77 12.61 16
36 H 0.02 0.83 7.98 -2.39 -0.02 0.81 16
37 H 0.08 4.14 4.97 -2.39 -0.01 4.13 16
38 H 0.10 5.11 6.24 -2.91 -0.02 5.10 16
39 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16
40 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16
41 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16
42 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16
43 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16
44 H 0.19 3.80 8.06 -2.91 -0.02 3.78 16
Total: -1.00 -59.10 368.57 5.99 -53.11
By element:
Atomic # 1 Polarization: 20.82 SS G_CDS: 0.96 Total: 21.79 kcal
Atomic # 6 Polarization: -49.60 SS G_CDS: 4.97 Total: -44.63 kcal
Atomic # 7 Polarization: -77.52 SS G_CDS: -0.76 Total: -78.29 kcal
Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal
Atomic # 16 Polarization: 2.69 SS G_CDS: -1.21 Total: 1.47 kcal
Total: -59.10 5.99 -53.11 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001141096902.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.420 kcal
(2) G-P(sol) polarization free energy of solvation -59.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.318 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.114 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.306 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds