Wall clock time and date at job start Tue Mar 31 2020 11:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47373 * 2 1 4 4 C 1.52998 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.36939 * 119.99900 * 270.00225 * 5 4 3 7 7 H 1.08001 * 119.99905 * 323.83455 * 6 5 4 8 8 C 1.38810 * 119.99711 * 143.82951 * 6 5 4 9 9 N 1.31616 * 120.00629 * 338.42716 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 158.42729 * 8 6 5 11 11 H 1.48504 * 109.47128 * 90.00180 * 10 8 6 12 12 H 1.48501 * 109.47136 * 210.00103 * 10 8 6 13 13 H 1.48504 * 109.47197 * 330.00017 * 10 8 6 14 14 C 1.46498 * 120.00190 * 89.99811 * 5 4 3 15 15 C 1.50702 * 109.47089 * 83.95150 * 14 5 4 16 16 C 1.38350 * 119.93780 * 264.87068 * 15 14 5 17 17 C 1.38305 * 120.24148 * 180.02562 * 16 15 14 18 18 C 1.38038 * 120.12510 * 359.73484 * 17 16 15 19 19 C 1.39330 * 119.87473 * 0.49357 * 18 17 16 20 20 C 1.48369 * 120.12270 * 179.78671 * 19 18 17 21 21 C 1.39371 * 122.77082 * 359.72561 * 20 19 18 22 22 C 1.33054 * 114.91808 * 180.02562 * 21 20 19 23 23 S 1.75810 * 109.92978 * 0.02562 * 22 21 20 24 24 C 1.34570 * 122.77134 * 179.74805 * 20 19 18 25 25 C 1.37986 * 119.93634 * 84.84630 * 15 14 5 26 26 H 1.09002 * 109.47173 * 299.99639 * 1 2 3 27 27 H 1.08996 * 109.47327 * 60.00306 * 1 2 3 28 28 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46834 * 239.99664 * 2 1 3 30 30 H 1.09002 * 109.47331 * 120.00145 * 2 1 3 31 31 H 1.09001 * 109.47415 * 60.00020 * 3 2 1 32 32 H 1.09002 * 109.47011 * 300.00341 * 3 2 1 33 33 H 1.09007 * 109.47199 * 59.99869 * 4 3 2 34 34 H 1.09002 * 109.47331 * 300.00145 * 4 3 2 35 35 H 0.96997 * 120.00359 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47112 * 323.95742 * 14 5 4 37 37 H 1.08996 * 109.47264 * 203.95337 * 14 5 4 38 38 H 1.07994 * 119.87556 * 0.02562 * 16 15 14 39 39 H 1.08007 * 119.93460 * 180.02562 * 17 16 15 40 40 H 1.07997 * 120.05899 * 180.28127 * 18 17 16 41 41 H 1.08003 * 122.53990 * 359.97438 * 21 20 19 42 42 H 1.08003 * 125.03474 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.22616 * 359.97438 * 24 20 19 44 44 H 1.08001 * 120.06591 * 359.97331 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1875 7 1 4.6781 2.9226 -2.0327 8 6 4.0130 4.8248 -1.3036 9 7 3.1692 5.3997 -0.4730 10 14 4.8432 5.8338 -2.6386 11 1 4.0075 5.8138 -3.8660 12 1 5.0045 7.2345 -2.1723 13 1 6.1776 5.2553 -2.9388 14 6 4.3031 3.5147 1.2671 15 6 5.6759 3.1584 1.7766 16 6 5.8281 2.1303 2.6898 17 6 7.0850 1.7984 3.1619 18 6 8.1957 2.4884 2.7196 19 6 8.0478 3.5277 1.8036 20 6 9.2373 4.2762 1.3280 21 6 10.5306 3.9926 1.7633 22 6 11.4805 4.7609 1.2363 23 16 10.7654 5.9214 0.1261 24 6 9.1566 5.2851 0.4412 25 6 6.7788 3.8577 1.3309 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 2.9787 6.3474 -0.5539 36 1 3.5540 3.2093 1.9977 37 1 4.2414 4.5917 1.1119 38 1 4.9623 1.5851 3.0353 39 1 7.1982 0.9946 3.8745 40 1 9.1772 2.2253 3.0855 41 1 10.7454 3.2093 2.4752 42 1 12.5347 4.6835 1.4582 43 1 8.2439 5.6484 -0.0077 44 1 6.6589 4.6596 0.6174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141384573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:33 Heat of formation + Delta-G solvation = 59.158778 kcal Electronic energy + Delta-G solvation = -23546.178675 eV Core-core repulsion = 20361.888621 eV Total energy + Delta-G solvation = -3184.290053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.25649 -37.31326 -36.02883 -34.01941 -31.64788 -31.12957 -30.68207 -28.43111 -27.80097 -25.72136 -24.13709 -23.81197 -21.56683 -21.32365 -20.67448 -19.86661 -18.55403 -17.50420 -16.66366 -16.07626 -15.10635 -14.88563 -14.78093 -14.29936 -13.90830 -13.74879 -13.48875 -13.32040 -13.20951 -13.13795 -12.50149 -12.45509 -12.15260 -12.07940 -11.91322 -11.73724 -11.35137 -11.16431 -10.93501 -10.82001 -10.67460 -10.57900 -10.40334 -10.29529 -10.28118 -9.90867 -9.89638 -9.63577 -9.20117 -8.61807 -8.53387 -8.09720 -7.55038 -6.63306 -5.85895 -3.36821 0.95021 1.74762 1.78951 2.03024 2.07172 3.10910 3.30353 3.39390 3.42715 4.40181 4.51668 4.91539 5.18444 5.25820 5.28594 5.37056 5.42639 5.47212 5.55422 5.66092 5.68038 5.78415 5.79906 5.99880 6.03798 6.07540 6.13003 6.22214 6.36683 6.39014 6.42472 6.44976 6.49119 6.55258 6.63792 6.66293 6.75477 6.80069 7.02060 7.09481 7.14929 7.28456 7.41227 7.56259 7.67398 7.78535 8.47362 9.13699 9.76665 10.35255 11.16376 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.004306 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.629194 B = 6500.897258 C = 8272.419108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.133 4.133 4 C 0.149 3.851 5 N -0.575 5.575 6 C -0.252 4.252 7 H 0.060 0.940 8 C 0.012 3.988 9 N -0.884 5.884 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.177 3.823 15 C -0.070 4.070 16 C -0.120 4.120 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.040 4.040 20 C -0.054 4.054 21 C -0.121 4.121 22 C -0.220 4.220 23 S 0.086 5.914 24 C -0.200 4.200 25 C -0.083 4.083 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.033 0.967 35 H 0.255 0.745 36 H 0.032 0.968 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -4.362 5.847 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.173 4.173 4 C 0.023 3.977 5 N -0.294 5.294 6 C -0.382 4.382 7 H 0.077 0.923 8 C -0.188 4.188 9 N -0.526 5.526 10 Si 0.714 3.286 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.051 3.949 15 C -0.074 4.074 16 C -0.139 4.139 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.042 4.042 20 C -0.066 4.066 21 C -0.151 4.151 22 C -0.355 4.355 23 S 0.350 5.650 24 C -0.335 4.335 25 C -0.102 4.102 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.158 0.842 42 H 0.180 0.820 43 H 0.186 0.814 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.868 -2.995 4.887 11.412 hybrid contribution -0.157 -0.560 0.134 0.597 sum 9.711 -3.555 5.021 11.495 Atomic orbital electron populations 1.21758 0.96814 1.00367 1.01669 1.21529 0.95074 0.98665 1.00846 1.22146 0.99100 0.93893 1.02139 1.20911 0.91353 0.87204 0.98220 1.43737 1.73698 1.10226 1.01707 1.19028 1.36361 0.92086 0.90679 0.92273 1.25087 0.97049 0.98813 0.97822 1.70000 1.32206 1.11240 1.39188 0.86581 0.80186 0.79765 0.82116 1.21115 1.21330 1.20136 1.19976 0.87054 1.01449 0.86397 1.21244 0.99215 0.93752 0.93150 1.21130 0.96661 0.97842 0.98272 1.20909 0.92862 0.99958 1.00671 1.20891 0.98110 0.96803 0.98956 1.18394 0.91400 0.96265 0.98168 1.17934 0.93451 0.96868 0.98311 1.20157 0.91411 1.01394 1.02172 1.25398 1.03181 1.02267 1.04626 1.84137 0.99584 1.36575 1.44713 1.25844 1.00612 1.02326 1.04764 1.21106 0.90747 0.99902 0.98450 0.93115 0.92949 0.93748 0.92753 0.92990 0.93034 0.91864 0.94146 0.94867 0.93479 0.94933 0.87862 0.86950 0.86969 0.87013 0.84196 0.82047 0.81379 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.56 5.54 -26.73 -0.15 -2.70 16 4 C 0.15 3.08 5.68 -4.04 -0.02 3.06 16 5 N -0.58 -13.69 2.42 -174.61 -0.42 -14.11 16 6 C -0.25 -6.60 9.47 -15.06 -0.14 -6.75 16 7 H 0.06 1.59 7.92 -52.49 -0.42 1.17 16 8 C 0.01 0.33 4.90 -17.43 -0.09 0.24 16 9 N -0.88 -24.31 11.47 55.49 0.64 -23.67 16 10 Si 0.88 20.84 29.61 -169.99 -5.03 15.81 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.18 4.01 5.35 -5.19 -0.03 3.98 16 15 C -0.07 -1.42 5.45 -104.67 -0.57 -1.99 16 16 C -0.12 -2.09 9.57 -39.52 -0.38 -2.46 16 17 C -0.13 -1.94 10.03 -39.63 -0.40 -2.33 16 18 C -0.13 -2.00 9.50 -39.25 -0.37 -2.37 16 19 C -0.04 -0.70 5.88 -104.90 -0.62 -1.31 16 20 C -0.05 -0.86 5.79 -106.60 -0.62 -1.48 16 21 C -0.12 -1.60 9.53 -40.96 -0.39 -1.99 16 22 C -0.22 -2.59 11.19 28.93 0.32 -2.27 16 23 S 0.09 1.11 23.32 -107.50 -2.51 -1.40 16 24 C -0.20 -3.17 10.51 29.43 0.31 -2.86 16 25 C -0.08 -1.65 9.15 -39.25 -0.36 -2.00 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.84 8.04 -51.93 -0.42 0.42 16 34 H 0.03 0.63 7.97 -51.93 -0.41 0.22 16 35 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.03 0.71 8.02 -51.93 -0.42 0.30 16 37 H 0.10 2.64 5.48 -51.93 -0.28 2.35 16 38 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 40 H 0.11 1.43 6.55 -52.49 -0.34 1.09 16 41 H 0.14 1.56 6.71 -52.48 -0.35 1.21 16 42 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.17 2.77 6.81 -52.49 -0.36 2.41 16 44 H 0.12 2.55 6.61 -52.49 -0.35 2.21 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -27.63 375.12 -11.67 -39.30 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.71 Total: 5.37 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -3.29 Total: -26.95 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.21 Total: -37.79 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.63 -11.67 -39.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141384573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.464 kcal (2) G-P(sol) polarization free energy of solvation -27.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds