Wall clock time and date at job start Tue Mar 31 2020 11:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47373 * 2 1 4 4 C 1.52998 * 109.47373 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47420 * 179.97438 * 4 3 2 6 6 C 1.36939 * 119.99900 * 270.00225 * 5 4 3 7 7 H 1.08001 * 119.99905 * 323.83455 * 6 5 4 8 8 C 1.38810 * 119.99711 * 143.82951 * 6 5 4 9 9 N 1.31616 * 120.00629 * 338.42716 * 8 6 5 10 10 Si 1.86803 * 119.99794 * 158.42729 * 8 6 5 11 11 H 1.48504 * 109.47128 * 90.00180 * 10 8 6 12 12 H 1.48501 * 109.47136 * 210.00103 * 10 8 6 13 13 H 1.48504 * 109.47197 * 330.00017 * 10 8 6 14 14 C 1.46498 * 120.00190 * 89.99811 * 5 4 3 15 15 C 1.50702 * 109.47089 * 83.95150 * 14 5 4 16 16 C 1.38350 * 119.93780 * 264.87068 * 15 14 5 17 17 C 1.38305 * 120.24148 * 180.02562 * 16 15 14 18 18 C 1.38038 * 120.12510 * 359.73484 * 17 16 15 19 19 C 1.39330 * 119.87473 * 0.49357 * 18 17 16 20 20 C 1.48369 * 120.12270 * 179.78671 * 19 18 17 21 21 C 1.39371 * 122.77082 * 359.72561 * 20 19 18 22 22 C 1.33054 * 114.91808 * 180.02562 * 21 20 19 23 23 S 1.75810 * 109.92978 * 0.02562 * 22 21 20 24 24 C 1.34570 * 122.77134 * 179.74805 * 20 19 18 25 25 C 1.37986 * 119.93634 * 84.84630 * 15 14 5 26 26 H 1.09002 * 109.47173 * 299.99639 * 1 2 3 27 27 H 1.08996 * 109.47327 * 60.00306 * 1 2 3 28 28 H 1.09001 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46834 * 239.99664 * 2 1 3 30 30 H 1.09002 * 109.47331 * 120.00145 * 2 1 3 31 31 H 1.09001 * 109.47415 * 60.00020 * 3 2 1 32 32 H 1.09002 * 109.47011 * 300.00341 * 3 2 1 33 33 H 1.09007 * 109.47199 * 59.99869 * 4 3 2 34 34 H 1.09002 * 109.47331 * 300.00145 * 4 3 2 35 35 H 0.96997 * 120.00359 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47112 * 323.95742 * 14 5 4 37 37 H 1.08996 * 109.47264 * 203.95337 * 14 5 4 38 38 H 1.07994 * 119.87556 * 0.02562 * 16 15 14 39 39 H 1.08007 * 119.93460 * 180.02562 * 17 16 15 40 40 H 1.07997 * 120.05899 * 180.28127 * 18 17 16 41 41 H 1.08003 * 122.53990 * 359.97438 * 21 20 19 42 42 H 1.08003 * 125.03474 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.22616 * 359.97438 * 24 20 19 44 44 H 1.08001 * 120.06591 * 359.97331 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1875 7 1 4.6781 2.9226 -2.0327 8 6 4.0130 4.8248 -1.3036 9 7 3.1692 5.3997 -0.4730 10 14 4.8432 5.8338 -2.6386 11 1 4.0075 5.8138 -3.8660 12 1 5.0045 7.2345 -2.1723 13 1 6.1776 5.2553 -2.9388 14 6 4.3031 3.5147 1.2671 15 6 5.6759 3.1584 1.7766 16 6 5.8281 2.1303 2.6898 17 6 7.0850 1.7984 3.1619 18 6 8.1957 2.4884 2.7196 19 6 8.0478 3.5277 1.8036 20 6 9.2373 4.2762 1.3280 21 6 10.5306 3.9926 1.7633 22 6 11.4805 4.7609 1.2363 23 16 10.7654 5.9214 0.1261 24 6 9.1566 5.2851 0.4412 25 6 6.7788 3.8577 1.3309 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 2.9787 6.3474 -0.5539 36 1 3.5540 3.2093 1.9977 37 1 4.2414 4.5917 1.1119 38 1 4.9623 1.5851 3.0353 39 1 7.1982 0.9946 3.8745 40 1 9.1772 2.2253 3.0855 41 1 10.7454 3.2093 2.4752 42 1 12.5347 4.6835 1.4582 43 1 8.2439 5.6484 -0.0077 44 1 6.6589 4.6596 0.6174 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141384573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:32 Heat of formation + Delta-G solvation = 48.780059 kcal Electronic energy + Delta-G solvation = -23546.628730 eV Core-core repulsion = 20361.888621 eV Total energy + Delta-G solvation = -3184.740108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56687 -38.63833 -37.58129 -35.54556 -33.45668 -32.37787 -32.19472 -29.62902 -29.34643 -27.49374 -25.50357 -25.32442 -23.02725 -22.54824 -22.09192 -21.48167 -19.73972 -18.91271 -18.28236 -17.34794 -16.82969 -16.37147 -16.21399 -15.86794 -15.40382 -15.21556 -15.16104 -14.63813 -14.40851 -14.32782 -13.86625 -13.68021 -13.55035 -13.36126 -13.25015 -13.19211 -13.00805 -12.79447 -12.67486 -12.35993 -12.25723 -12.04181 -11.87412 -11.82870 -11.63182 -11.56803 -11.54823 -11.25953 -10.55559 -10.39039 -9.67324 -9.52745 -8.77301 -8.59347 -7.88519 -5.42890 -0.22805 0.60559 0.65904 0.69232 1.02968 1.35953 1.39929 1.48226 1.93406 2.45666 3.08073 3.23400 3.80157 3.82570 3.99400 4.15536 4.17933 4.19642 4.30526 4.39130 4.43640 4.46858 4.58245 4.59152 4.66073 4.72358 4.80688 4.88101 5.01449 5.06711 5.08510 5.09969 5.18786 5.22593 5.26642 5.36529 5.40376 5.43165 5.52946 5.57965 5.60725 5.68217 5.75561 5.84098 6.01735 6.24189 6.45540 7.13683 7.83932 8.36463 9.10204 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.004306 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.629194 B = 6500.897258 C = 8272.419108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.148 3.852 5 N -0.589 5.589 6 C -0.256 4.256 7 H 0.048 0.952 8 C -0.027 4.027 9 N -0.911 5.911 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.186 3.814 15 C -0.092 4.092 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.119 4.119 19 C -0.047 4.047 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.199 4.199 23 S 0.107 5.893 24 C -0.238 4.238 25 C -0.109 4.109 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.251 0.749 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.201 0.799 43 H 0.143 0.857 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -6.780 7.543 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.161 4.161 4 C 0.023 3.977 5 N -0.309 5.309 6 C -0.386 4.386 7 H 0.066 0.934 8 C -0.225 4.225 9 N -0.555 5.555 10 Si 0.764 3.236 11 H -0.209 1.209 12 H -0.215 1.215 13 H -0.200 1.200 14 C 0.061 3.939 15 C -0.094 4.094 16 C -0.143 4.143 17 C -0.132 4.132 18 C -0.138 4.138 19 C -0.049 4.049 20 C -0.077 4.077 21 C -0.163 4.163 22 C -0.334 4.334 23 S 0.371 5.629 24 C -0.374 4.374 25 C -0.128 4.128 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.169 0.831 41 H 0.186 0.814 42 H 0.218 0.782 43 H 0.161 0.839 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.569 -5.425 6.584 15.191 hybrid contribution -0.896 0.173 -0.343 0.974 sum 11.674 -5.252 6.242 14.241 Atomic orbital electron populations 1.21738 0.95482 1.01964 1.01233 1.21460 0.96224 0.95557 1.02058 1.21966 0.98058 0.96396 0.99640 1.21007 0.92167 0.85683 0.98844 1.43916 1.74482 1.11163 1.01335 1.19110 1.35656 0.92494 0.91389 0.93424 1.25594 0.97662 0.99559 0.99671 1.70108 1.33647 1.10989 1.40795 0.85768 0.79281 0.78407 0.80116 1.20864 1.21465 1.20043 1.19705 0.89006 0.99235 0.85999 1.20941 0.97425 0.95748 0.95304 1.21283 0.98557 0.96932 0.97547 1.21346 0.91510 1.00157 1.00157 1.21353 1.00085 0.95109 0.97226 1.18624 0.90817 0.97060 0.98407 1.18152 0.94374 0.96723 0.98475 1.20323 0.89966 1.02775 1.03269 1.25881 1.04755 1.00263 1.02497 1.84028 0.97325 1.36637 1.44896 1.25856 1.01714 1.03768 1.06052 1.20960 0.92483 1.00095 0.99303 0.93196 0.93857 0.91072 0.92087 0.91125 0.94498 0.95338 0.94575 0.92904 0.93958 0.95040 0.91491 0.85554 0.82753 0.83138 0.81403 0.78181 0.83918 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.11 -3.38 5.93 30.59 0.18 -3.20 16 3 C -0.12 -4.76 5.54 30.59 0.17 -4.59 16 4 C 0.15 6.24 5.68 86.38 0.49 6.73 16 5 N -0.59 -29.45 2.42 -706.33 -1.71 -31.16 16 6 C -0.26 -14.18 9.47 84.03 0.80 -13.39 16 7 H 0.05 2.70 7.92 -2.91 -0.02 2.68 16 8 C -0.03 -1.52 4.90 84.86 0.42 -1.11 16 9 N -0.91 -53.29 11.47 21.65 0.25 -53.05 16 10 Si 0.94 45.29 29.61 68.60 2.03 47.32 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 C 0.19 8.94 5.35 85.63 0.46 9.40 16 15 C -0.09 -3.80 5.45 -19.90 -0.11 -3.91 16 16 C -0.12 -4.14 9.57 22.31 0.21 -3.93 16 17 C -0.11 -3.08 10.03 22.24 0.22 -2.86 16 18 C -0.12 -3.30 9.50 22.49 0.21 -3.09 16 19 C -0.05 -1.62 5.88 -20.04 -0.12 -1.73 16 20 C -0.06 -2.02 5.79 -21.15 -0.12 -2.15 16 21 C -0.13 -3.11 9.53 21.38 0.20 -2.90 16 22 C -0.20 -3.97 11.19 66.66 0.75 -3.22 16 23 S 0.11 2.63 23.32 -56.49 -1.32 1.31 16 24 C -0.24 -7.82 10.51 66.98 0.70 -7.12 16 25 C -0.11 -4.57 9.15 22.48 0.21 -4.36 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.53 8.04 -2.38 -0.02 1.51 16 34 H 0.05 1.99 7.97 -2.39 -0.02 1.98 16 35 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 36 H 0.03 1.45 8.02 -2.39 -0.02 1.43 16 37 H 0.07 3.71 5.48 -2.39 -0.01 3.70 16 38 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 40 H 0.15 3.00 6.55 -2.91 -0.02 2.98 16 41 H 0.17 2.87 6.71 -2.91 -0.02 2.85 16 42 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.14 5.28 6.81 -2.91 -0.02 5.26 16 44 H 0.09 4.16 6.61 -2.91 -0.02 4.14 16 Total: -1.00 -64.72 375.12 5.61 -59.11 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.97 Total: 20.99 kcal Atomic # 6 Polarization: -49.91 SS G_CDS: 5.39 Total: -44.53 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.46 Total: -84.21 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.32 Total: 1.31 kcal Total: -64.72 5.61 -59.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141384573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.893 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds