Wall clock time and date at job start Tue Mar 31 2020 11:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47081 * 2 1 4 4 N 1.46900 * 109.46880 * 181.11155 * 3 2 1 5 5 C 1.46893 * 111.00000 * 299.44689 * 4 3 2 6 6 C 1.50701 * 109.47656 * 294.06387 * 5 4 3 7 7 H 1.08008 * 119.99625 * 355.09376 * 6 5 4 8 8 C 1.37867 * 120.00438 * 175.09191 * 6 5 4 9 9 N 1.31513 * 120.00346 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47199 * 90.00028 * 10 8 6 12 12 H 1.48504 * 109.47095 * 209.99740 * 10 8 6 13 13 H 1.48500 * 109.47228 * 329.99960 * 10 8 6 14 14 C 1.46897 * 111.00146 * 63.40428 * 4 3 2 15 15 C 1.50698 * 109.47244 * 66.04474 * 14 4 3 16 16 C 1.38351 * 119.93986 * 269.97708 * 15 14 4 17 17 C 1.38305 * 120.25110 * 179.97438 * 16 15 14 18 18 C 1.38041 * 120.12138 * 359.74593 * 17 16 15 19 19 C 1.39335 * 119.86899 * 0.53168 * 18 17 16 20 20 C 1.48370 * 120.11746 * 179.74710 * 19 18 17 21 21 C 1.39371 * 122.77191 * 359.72165 * 20 19 18 22 22 C 1.33051 * 114.91831 * 180.02562 * 21 20 19 23 23 S 1.75812 * 109.93094 * 359.97438 * 22 21 20 24 24 C 1.34573 * 122.76989 * 179.74676 * 20 19 18 25 25 C 1.37992 * 119.93868 * 90.00045 * 15 14 4 26 26 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47097 * 300.00059 * 1 2 3 28 28 H 1.09000 * 109.47060 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.47097 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.46840 * 119.99510 * 2 1 3 31 31 H 1.08996 * 109.47298 * 61.10574 * 3 2 1 32 32 H 1.09000 * 109.46864 * 301.10803 * 3 2 1 33 33 H 1.09002 * 109.47136 * 54.06081 * 5 4 3 34 34 H 1.09004 * 109.47307 * 174.06482 * 5 4 3 35 35 H 0.96998 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47005 * 306.04347 * 14 4 3 37 37 H 1.08996 * 109.47184 * 186.04111 * 14 4 3 38 38 H 1.07999 * 119.87309 * 0.02562 * 16 15 14 39 39 H 1.07993 * 119.94010 * 179.97438 * 17 16 15 40 40 H 1.07991 * 120.06138 * 180.27305 * 18 17 16 41 41 H 1.08003 * 122.53937 * 0.02562 * 21 20 19 42 42 H 1.08000 * 125.03943 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.22990 * 359.97438 * 24 20 19 44 44 H 1.08000 * 120.06687 * 359.97248 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5088 1.4426 -0.0269 5 6 4.0569 0.7607 1.1531 6 6 3.7187 1.5498 2.3917 7 1 3.2228 2.5053 2.3046 8 6 4.0423 1.0520 3.6360 9 7 4.6457 -0.1117 3.7422 10 14 3.6224 2.0299 5.1713 11 1 2.2676 1.6492 5.6455 12 1 4.6188 1.7370 6.2327 13 1 3.6469 3.4809 4.8561 14 6 4.0127 0.8366 -1.2665 15 6 3.6326 1.7027 -2.4397 16 6 2.4336 1.4891 -3.0959 17 6 2.0781 2.2805 -4.1731 18 6 2.9167 3.2922 -4.5959 19 6 4.1281 3.5081 -3.9424 20 6 5.0362 4.5903 -4.3958 21 6 4.7386 5.4229 -5.4731 22 6 5.6633 6.3401 -5.7449 23 16 7.0023 6.1944 -4.6150 24 6 6.2154 4.8487 -3.8011 25 6 4.4815 2.7072 -2.8577 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6930 1.9507 0.8997 32 1 1.6606 1.9621 -0.8799 33 1 3.6254 -0.2373 1.2291 34 1 5.1398 0.6820 1.0570 35 1 4.8737 -0.4617 4.6177 36 1 3.5761 -0.1545 -1.3900 37 1 5.0981 0.7516 -1.2143 38 1 1.7722 0.7018 -2.7654 39 1 1.1411 2.1090 -4.6819 40 1 2.6361 3.9124 -5.4343 41 1 3.8265 5.3305 -6.0441 42 1 5.6003 7.0671 -6.5411 43 1 6.6166 4.3123 -2.9539 44 1 5.4173 2.8732 -2.3448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141384616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:04 Heat of formation + Delta-G solvation = 53.492016 kcal Electronic energy + Delta-G solvation = -23325.077966 eV Core-core repulsion = 20140.542183 eV Total energy + Delta-G solvation = -3184.535783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.74071 -37.97980 -36.69122 -32.81466 -32.51910 -31.51490 -30.87073 -28.72027 -27.17874 -26.10639 -24.62707 -23.74266 -22.09523 -21.71753 -21.35015 -19.38294 -18.71071 -17.62123 -16.50370 -16.18171 -15.58379 -15.13857 -15.00879 -14.49569 -14.20234 -14.06159 -13.68989 -13.48781 -13.38566 -13.22536 -12.75366 -12.65468 -12.37061 -12.17593 -12.13946 -11.61280 -11.47007 -11.24342 -11.14834 -10.96144 -10.82967 -10.79223 -10.70631 -10.59996 -10.39165 -9.92020 -9.70565 -9.47277 -9.20152 -8.83746 -8.57144 -8.41443 -7.85596 -7.13154 -6.01757 -4.02474 0.68426 1.46954 1.53321 1.60112 1.85554 2.81482 3.31996 3.38515 3.43167 4.05616 4.44621 4.65272 4.88048 4.98881 5.03395 5.15261 5.22199 5.30416 5.34272 5.46186 5.52571 5.55489 5.59918 5.62301 5.73940 5.86810 5.93705 6.04776 6.09983 6.12814 6.21625 6.25105 6.29500 6.37739 6.43948 6.51935 6.62841 6.74795 6.76425 6.91115 6.99713 7.16049 7.32258 7.43656 7.82404 8.10384 8.21363 8.56511 9.05770 9.61707 11.08832 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003374 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.831416 B = 8297.679154 C = 9868.445666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.529 5.529 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.083 3.917 15 C -0.055 4.055 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.034 4.034 20 C -0.058 4.058 21 C -0.123 4.123 22 C -0.217 4.217 23 S 0.096 5.904 24 C -0.202 4.202 25 C -0.087 4.087 26 H 0.045 0.955 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.004 0.996 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.038 0.962 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.141 0.859 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 7.387 -19.495 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.044 4.044 15 C -0.055 4.055 16 C -0.130 4.130 17 C -0.139 4.139 18 C -0.136 4.136 19 C -0.036 4.036 20 C -0.069 4.069 21 C -0.153 4.153 22 C -0.352 4.352 23 S 0.361 5.639 24 C -0.337 4.337 25 C -0.106 4.106 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.021 0.979 34 H 0.042 0.958 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.159 0.841 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.094 8.571 -19.133 20.966 hybrid contribution -1.798 -1.147 0.756 2.263 sum -1.705 7.425 -18.377 19.893 Atomic orbital electron populations 1.21654 0.96534 1.00642 1.01220 1.22182 0.95485 1.00478 1.02121 1.22082 0.88369 0.94375 1.01563 1.62378 1.06668 1.54708 1.01378 1.19803 0.94811 0.92980 0.86023 1.21133 1.38032 1.05018 0.89950 0.91966 1.24960 0.95431 0.95068 0.99071 1.69952 1.41625 1.18318 1.24027 0.86549 0.77990 0.80507 0.82697 1.20783 1.21312 1.19787 1.21090 1.00278 0.94149 0.88929 1.19886 0.93879 0.96118 0.95666 1.21170 0.96345 0.99880 0.95621 1.20969 0.99455 0.96083 0.97413 1.21036 0.93914 0.98507 1.00132 1.18350 0.93906 0.94929 0.96406 1.17879 0.94619 0.97672 0.96780 1.20151 1.00778 0.95991 0.98397 1.25446 0.98657 1.05596 1.05530 1.84229 1.22544 1.31093 1.26080 1.25828 0.99273 1.02713 1.05902 1.21048 1.00006 0.94407 0.95180 0.93635 0.92740 0.93548 0.93124 0.90502 0.90285 0.92618 0.97873 0.95793 0.92995 0.94384 0.90723 0.86242 0.86309 0.86432 0.84120 0.81905 0.81320 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.16 -2.88 5.18 -26.73 -0.14 -3.02 16 3 C 0.06 1.24 4.79 -3.82 -0.02 1.22 16 4 N -0.53 -11.11 4.69 -237.52 -1.11 -12.23 16 5 C 0.19 4.77 4.48 -4.98 -0.02 4.74 16 6 C -0.50 -13.89 8.40 -34.44 -0.29 -14.18 16 7 H 0.06 1.73 7.29 -52.48 -0.38 1.35 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.08 1.48 4.93 -4.98 -0.02 1.45 16 15 C -0.05 -0.86 4.88 -104.67 -0.51 -1.37 16 16 C -0.11 -1.55 7.90 -39.51 -0.31 -1.86 16 17 C -0.12 -1.47 10.03 -39.63 -0.40 -1.87 16 18 C -0.12 -1.42 9.50 -39.25 -0.37 -1.79 16 19 C -0.03 -0.45 5.88 -104.89 -0.62 -1.07 16 20 C -0.06 -0.71 5.79 -106.60 -0.62 -1.33 16 21 C -0.12 -1.28 9.53 -40.96 -0.39 -1.67 16 22 C -0.22 -2.01 11.19 28.93 0.32 -1.69 16 23 S 0.10 0.96 23.32 -107.50 -2.51 -1.55 16 24 C -0.20 -2.39 10.51 29.44 0.31 -2.08 16 25 C -0.09 -1.31 9.13 -39.25 -0.36 -1.66 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.83 5.71 -51.93 -0.30 0.54 16 30 H 0.08 1.61 6.35 -51.93 -0.33 1.28 16 31 H 0.08 1.68 6.94 -51.93 -0.36 1.32 16 32 H 0.06 0.98 5.92 -51.93 -0.31 0.67 16 33 H 0.00 0.09 6.04 -51.93 -0.31 -0.22 16 34 H 0.02 0.65 7.93 -51.93 -0.41 0.24 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 37 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 38 H 0.12 1.58 7.29 -52.49 -0.38 1.20 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 40 H 0.12 1.14 6.55 -52.49 -0.34 0.80 16 41 H 0.14 1.20 6.71 -52.48 -0.35 0.84 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.17 1.91 6.81 -52.49 -0.36 1.55 16 44 H 0.12 1.79 6.61 -52.49 -0.35 1.44 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -29.67 362.58 -11.76 -41.44 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -6.16 Total: 2.40 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -3.16 Total: -26.43 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: -0.38 Total: -37.89 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.67 -11.76 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141384616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.928 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds