Wall clock time and date at job start Tue Mar 31 2020 11:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47081 * 2 1 4 4 N 1.46900 * 109.46880 * 181.11155 * 3 2 1 5 5 C 1.46893 * 111.00000 * 299.44689 * 4 3 2 6 6 C 1.50701 * 109.47656 * 294.06387 * 5 4 3 7 7 H 1.08008 * 119.99625 * 355.09376 * 6 5 4 8 8 C 1.37867 * 120.00438 * 175.09191 * 6 5 4 9 9 N 1.31513 * 120.00346 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99966 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47199 * 90.00028 * 10 8 6 12 12 H 1.48504 * 109.47095 * 209.99740 * 10 8 6 13 13 H 1.48500 * 109.47228 * 329.99960 * 10 8 6 14 14 C 1.46897 * 111.00146 * 63.40428 * 4 3 2 15 15 C 1.50698 * 109.47244 * 66.04474 * 14 4 3 16 16 C 1.38351 * 119.93986 * 269.97708 * 15 14 4 17 17 C 1.38305 * 120.25110 * 179.97438 * 16 15 14 18 18 C 1.38041 * 120.12138 * 359.74593 * 17 16 15 19 19 C 1.39335 * 119.86899 * 0.53168 * 18 17 16 20 20 C 1.48370 * 120.11746 * 179.74710 * 19 18 17 21 21 C 1.39371 * 122.77191 * 359.72165 * 20 19 18 22 22 C 1.33051 * 114.91831 * 180.02562 * 21 20 19 23 23 S 1.75812 * 109.93094 * 359.97438 * 22 21 20 24 24 C 1.34573 * 122.76989 * 179.74676 * 20 19 18 25 25 C 1.37992 * 119.93868 * 90.00045 * 15 14 4 26 26 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47097 * 300.00059 * 1 2 3 28 28 H 1.09000 * 109.47060 * 59.99985 * 1 2 3 29 29 H 1.08999 * 109.47097 * 239.99941 * 2 1 3 30 30 H 1.08999 * 109.46840 * 119.99510 * 2 1 3 31 31 H 1.08996 * 109.47298 * 61.10574 * 3 2 1 32 32 H 1.09000 * 109.46864 * 301.10803 * 3 2 1 33 33 H 1.09002 * 109.47136 * 54.06081 * 5 4 3 34 34 H 1.09004 * 109.47307 * 174.06482 * 5 4 3 35 35 H 0.96998 * 120.00197 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.47005 * 306.04347 * 14 4 3 37 37 H 1.08996 * 109.47184 * 186.04111 * 14 4 3 38 38 H 1.07999 * 119.87309 * 0.02562 * 16 15 14 39 39 H 1.07993 * 119.94010 * 179.97438 * 17 16 15 40 40 H 1.07991 * 120.06138 * 180.27305 * 18 17 16 41 41 H 1.08003 * 122.53937 * 0.02562 * 21 20 19 42 42 H 1.08000 * 125.03943 * 180.02562 * 22 21 20 43 43 H 1.07999 * 125.22990 * 359.97438 * 24 20 19 44 44 H 1.08000 * 120.06687 * 359.97248 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5088 1.4426 -0.0269 5 6 4.0569 0.7607 1.1531 6 6 3.7187 1.5498 2.3917 7 1 3.2228 2.5053 2.3046 8 6 4.0423 1.0520 3.6360 9 7 4.6457 -0.1117 3.7422 10 14 3.6224 2.0299 5.1713 11 1 2.2676 1.6492 5.6455 12 1 4.6188 1.7370 6.2327 13 1 3.6469 3.4809 4.8561 14 6 4.0127 0.8366 -1.2665 15 6 3.6326 1.7027 -2.4397 16 6 2.4336 1.4891 -3.0959 17 6 2.0781 2.2805 -4.1731 18 6 2.9167 3.2922 -4.5959 19 6 4.1281 3.5081 -3.9424 20 6 5.0362 4.5903 -4.3958 21 6 4.7386 5.4229 -5.4731 22 6 5.6633 6.3401 -5.7449 23 16 7.0023 6.1944 -4.6150 24 6 6.2154 4.8487 -3.8011 25 6 4.4815 2.7072 -2.8577 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6930 1.9507 0.8997 32 1 1.6606 1.9621 -0.8799 33 1 3.6254 -0.2373 1.2291 34 1 5.1398 0.6820 1.0570 35 1 4.8737 -0.4617 4.6177 36 1 3.5761 -0.1545 -1.3900 37 1 5.0981 0.7516 -1.2143 38 1 1.7722 0.7018 -2.7654 39 1 1.1411 2.1090 -4.6819 40 1 2.6361 3.9124 -5.4343 41 1 3.8265 5.3305 -6.0441 42 1 5.6003 7.0671 -6.5411 43 1 6.6166 4.3123 -2.9539 44 1 5.4173 2.8732 -2.3448 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141384616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:03 Heat of formation + Delta-G solvation = 38.676143 kcal Electronic energy + Delta-G solvation = -23325.720430 eV Core-core repulsion = 20140.542183 eV Total energy + Delta-G solvation = -3185.178247 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81966 -39.23260 -37.87743 -34.86968 -33.85790 -32.48776 -32.26202 -29.60842 -29.05830 -27.51536 -25.85373 -25.17565 -23.72091 -22.69186 -22.49886 -20.88485 -19.63486 -18.58610 -18.29000 -17.42954 -16.97201 -16.55097 -16.51844 -16.00627 -15.41182 -15.28268 -15.17718 -14.68723 -14.38993 -14.29889 -14.19537 -13.70684 -13.57575 -13.34019 -13.21054 -13.18157 -12.84913 -12.67819 -12.65838 -12.62094 -12.41891 -12.23687 -12.14086 -11.95126 -11.67950 -11.54697 -11.32197 -11.20671 -10.59940 -10.40422 -9.67041 -9.64064 -8.89205 -8.74984 -8.18951 -6.28192 -0.22203 0.51638 0.58888 0.73867 1.06544 1.39178 1.40201 1.51798 1.91750 2.40021 2.98560 3.13373 3.55426 3.71435 3.92841 4.03936 4.09035 4.14870 4.19077 4.25908 4.38197 4.45298 4.51427 4.53272 4.66113 4.67338 4.69838 4.76933 4.89149 5.01335 5.07569 5.11373 5.14553 5.18182 5.19777 5.31272 5.33568 5.42522 5.44388 5.51954 5.62714 5.68316 5.76063 5.81800 6.07985 6.13369 6.38287 6.66557 6.88343 7.41024 8.91331 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012925 B = 0.003374 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.831416 B = 8297.679154 C = 9868.445666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.071 3.929 4 N -0.539 5.539 5 C 0.206 3.794 6 C -0.516 4.516 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.089 3.911 15 C -0.073 4.073 16 C -0.118 4.118 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.040 4.040 20 C -0.071 4.071 21 C -0.136 4.136 22 C -0.206 4.206 23 S 0.109 5.891 24 C -0.228 4.228 25 C -0.106 4.106 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.079 0.921 33 H -0.018 1.018 34 H -0.006 1.006 35 H 0.263 0.737 36 H 0.041 0.959 37 H 0.061 0.939 38 H 0.127 0.873 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.164 0.836 42 H 0.195 0.805 43 H 0.160 0.840 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 9.138 -21.795 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.057 4.057 4 N -0.261 5.261 5 C 0.080 3.920 6 C -0.555 4.555 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.038 4.038 15 C -0.073 4.073 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.130 4.130 19 C -0.042 4.042 20 C -0.083 4.083 21 C -0.165 4.165 22 C -0.341 4.341 23 S 0.373 5.627 24 C -0.363 4.363 25 C -0.126 4.126 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.000 1.000 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.212 0.788 43 H 0.177 0.823 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.925 10.330 -21.453 23.888 hybrid contribution -1.110 -1.647 1.356 2.405 sum -3.036 8.683 -20.097 22.102 Atomic orbital electron populations 1.21611 0.93747 1.01924 1.02127 1.22045 0.97873 0.98802 1.00631 1.22032 0.87041 0.95438 1.01238 1.62248 1.08086 1.54569 1.01240 1.19416 0.92919 0.92109 0.87595 1.21394 1.37934 1.04959 0.91195 0.92516 1.25820 0.95154 0.96041 1.02331 1.70075 1.42570 1.19856 1.24907 0.85480 0.78071 0.79078 0.78603 1.19778 1.20734 1.19211 1.21022 0.99451 0.94853 0.88518 1.19673 0.95428 0.96685 0.95556 1.21290 0.95579 1.00561 0.96272 1.21335 1.00485 0.94949 0.96358 1.21439 0.92844 0.98432 1.00327 1.18556 0.94884 0.94868 0.95879 1.18067 0.94559 0.97959 0.97743 1.20336 1.02085 0.95927 0.98152 1.25855 0.97448 1.05444 1.05380 1.84176 1.22764 1.29779 1.25961 1.25952 1.00041 1.03953 1.06393 1.21058 0.99872 0.95249 0.96382 0.92206 0.93448 0.90982 0.91913 0.94640 0.92861 0.90310 0.99998 0.98765 0.92789 0.94099 0.92032 0.85497 0.82908 0.83283 0.81843 0.78830 0.82253 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.07 16 2 C -0.15 -5.49 5.18 30.60 0.16 -5.34 16 3 C 0.07 2.75 4.79 86.31 0.41 3.16 16 4 N -0.54 -23.76 4.69 -905.38 -4.25 -28.01 16 5 C 0.21 11.07 4.48 85.56 0.38 11.45 16 6 C -0.52 -29.73 8.40 25.60 0.22 -29.52 16 7 H 0.06 3.26 7.29 -2.91 -0.02 3.24 16 8 C 0.00 0.25 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.64 13.29 21.44 0.28 -56.36 16 10 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.09 3.32 4.93 85.56 0.42 3.74 16 15 C -0.07 -2.29 4.88 -19.90 -0.10 -2.39 16 16 C -0.12 -3.07 7.90 22.31 0.18 -2.89 16 17 C -0.11 -2.36 10.03 22.24 0.22 -2.14 16 18 C -0.11 -2.36 9.50 22.49 0.21 -2.15 16 19 C -0.04 -1.03 5.88 -20.04 -0.12 -1.15 16 20 C -0.07 -1.68 5.79 -21.15 -0.12 -1.80 16 21 C -0.14 -2.45 9.53 21.38 0.20 -2.24 16 22 C -0.21 -3.22 11.19 66.66 0.75 -2.47 16 23 S 0.11 2.03 23.32 -56.49 -1.32 0.71 16 24 C -0.23 -5.46 10.51 66.98 0.70 -4.76 16 25 C -0.11 -3.27 9.13 22.49 0.21 -3.06 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 2.05 5.71 -2.39 -0.01 2.04 16 30 H 0.03 1.55 6.35 -2.39 -0.02 1.53 16 31 H 0.05 2.33 6.94 -2.39 -0.02 2.31 16 32 H 0.08 2.70 5.92 -2.39 -0.01 2.69 16 33 H -0.02 -1.01 6.04 -2.39 -0.01 -1.02 16 34 H -0.01 -0.34 7.93 -2.39 -0.02 -0.35 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.04 1.48 6.03 -2.39 -0.01 1.46 16 37 H 0.06 2.38 7.87 -2.39 -0.02 2.36 16 38 H 0.13 3.05 7.29 -2.91 -0.02 3.03 16 39 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 2.18 6.55 -2.92 -0.02 2.16 16 41 H 0.16 2.10 6.71 -2.91 -0.02 2.08 16 42 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.16 3.94 6.81 -2.91 -0.02 3.92 16 44 H 0.11 3.52 6.61 -2.91 -0.02 3.50 16 Total: -1.00 -66.81 362.58 2.65 -64.17 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 1.00 Total: 16.30 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 4.90 Total: -43.91 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -3.96 Total: -84.37 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -66.81 2.65 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141384616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.845 kcal (2) G-P(sol) polarization free energy of solvation -66.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds