Wall clock time and date at job start Tue Mar 31 2020 10:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31179 * 118.51285 * 2 1 4 4 C 1.34142 * 120.46576 * 179.97438 * 3 2 1 5 5 C 1.40163 * 121.96099 * 180.20996 * 4 3 2 6 6 C 1.36281 * 119.61943 * 180.26684 * 5 4 3 7 7 C 1.39418 * 121.00245 * 359.49056 * 6 5 4 8 8 F 1.35097 * 119.58032 * 180.25679 * 7 6 5 9 9 C 1.36579 * 120.84412 * 0.28461 * 7 6 5 10 10 C 1.39924 * 119.48862 * 359.97438 * 9 7 6 11 11 C 1.41613 * 122.10708 * 179.97438 * 10 9 7 12 12 N 1.37889 * 120.90548 * 359.97438 * 11 10 9 13 13 C 1.46497 * 119.99894 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.41440 * 35.13586 * 13 12 11 15 15 C 1.52954 * 109.41791 * 155.00027 * 13 12 11 16 16 C 1.53228 * 109.41018 * 183.70047 * 15 13 12 17 17 C 1.51267 * 108.53454 * 305.37638 * 16 15 13 18 18 C 1.37879 * 120.84479 * 231.32033 * 17 16 15 19 19 N 1.31517 * 120.00231 * 359.97438 * 18 17 16 20 20 Si 1.86799 * 119.99977 * 180.02562 * 18 17 16 21 21 H 1.48499 * 109.47091 * 59.99906 * 20 18 17 22 22 H 1.48501 * 109.47243 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46882 * 300.00034 * 20 18 17 24 24 C 1.51265 * 118.30479 * 51.34634 * 17 16 15 25 25 C 1.52962 * 109.41123 * 275.35321 * 13 12 11 26 26 N 1.32346 * 118.51408 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46327 * 270.01896 * 1 2 3 28 28 H 1.08998 * 109.46922 * 30.01874 * 1 2 3 29 29 H 1.08993 * 109.47040 * 150.02074 * 1 2 3 30 30 H 1.08003 * 120.19189 * 0.03803 * 5 4 3 31 31 H 1.08002 * 119.50331 * 179.77898 * 6 5 4 32 32 H 1.07998 * 120.25686 * 179.97438 * 9 7 6 33 33 H 0.97001 * 120.00182 * 0.02562 * 12 11 10 34 34 H 1.09007 * 109.47850 * 303.68541 * 15 13 12 35 35 H 1.09001 * 109.48248 * 63.71815 * 15 13 12 36 36 H 1.09007 * 109.61891 * 65.08875 * 16 15 13 37 37 H 1.08992 * 109.62587 * 185.45998 * 16 15 13 38 38 H 0.96996 * 120.00299 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.62700 * 68.36319 * 24 17 16 40 40 H 1.09001 * 109.62313 * 188.93830 * 24 17 16 41 41 H 1.08999 * 109.48186 * 296.27061 * 25 13 12 42 42 H 1.09003 * 109.48616 * 56.31880 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1332 1.1527 0.0000 4 6 3.4739 1.1984 0.0005 5 6 4.1748 2.4121 0.0049 6 6 5.5376 2.4029 -0.0003 7 6 6.2476 1.2031 0.0007 8 9 7.5984 1.2275 0.0007 9 6 5.5951 0.0033 0.0011 10 6 4.1960 -0.0199 0.0011 11 6 3.4633 -1.2317 0.0009 12 7 4.1093 -2.4499 0.0003 13 6 3.3316 -3.6914 -0.0004 14 1 2.4268 -3.5518 -0.5920 15 6 4.1696 -4.8161 -0.6105 16 6 3.3248 -6.0916 -0.6961 17 6 2.7769 -6.3987 0.6800 18 6 2.9297 -7.6500 1.2387 19 7 3.5579 -8.5948 0.5737 20 14 2.2430 -8.0036 2.9395 21 1 0.7734 -7.7900 2.9342 22 1 2.5378 -9.4112 3.3095 23 1 2.8724 -7.0904 3.9271 24 6 2.0566 -5.2983 1.4272 25 6 2.9475 -4.0515 1.4358 26 7 2.1388 -1.1629 0.0005 27 1 -0.3632 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 3.6381 3.3493 0.0086 31 1 6.0758 3.3393 -0.0005 32 1 6.1546 -0.9205 0.0015 33 1 5.0787 -2.4849 0.0004 34 1 4.4934 -4.5267 -1.6103 35 1 5.0427 -4.9997 0.0157 36 1 2.5004 -5.9386 -1.3927 37 1 3.9453 -6.9193 -1.0395 38 1 3.6657 -9.4750 0.9669 39 1 1.1150 -5.0719 0.9273 40 1 1.8632 -5.6171 2.4515 41 1 3.8495 -4.2533 2.0136 42 1 2.4051 -3.2203 1.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157049974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:21 Heat of formation + Delta-G solvation = 4.246860 kcal Electronic energy + Delta-G solvation = -25834.484535 eV Core-core repulsion = 22113.892897 eV Total energy + Delta-G solvation = -3720.591638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.05438 -41.31980 -38.09362 -37.49328 -35.37254 -32.77706 -32.12829 -31.14794 -30.77329 -29.73097 -27.96072 -27.14498 -24.46166 -23.03438 -22.55595 -21.59179 -21.44598 -19.70456 -18.69656 -18.32375 -17.41430 -16.38969 -16.18417 -15.88385 -15.59111 -15.17437 -14.89120 -14.50915 -14.29065 -13.91330 -13.73818 -13.50999 -13.10802 -13.03914 -12.91723 -12.60702 -12.29360 -12.18874 -12.01684 -11.75271 -11.57257 -11.26027 -11.05896 -10.78935 -10.77470 -10.70333 -10.25281 -10.09675 -9.80667 -9.38114 -9.21689 -9.10132 -8.95679 -8.68285 -8.53919 -7.64033 -6.17383 -4.08758 0.28852 0.60527 1.86636 2.76462 3.07750 3.25223 3.32104 3.33405 3.98674 4.03639 4.04296 4.19242 4.33129 4.35345 4.58282 4.72743 5.03542 5.10824 5.21611 5.44737 5.55727 5.60220 5.62751 5.65245 5.74016 5.78005 5.85655 5.92008 6.07973 6.27220 6.36343 6.47215 6.49766 6.60172 6.75561 6.77700 6.86369 6.95463 7.04125 7.29181 7.34929 7.54553 7.60346 7.67199 7.75945 8.29522 8.44388 8.88172 9.47477 10.92217 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.003587 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.849977 B = 7803.738819 C = 8801.366928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.377 3.623 3 N -0.567 5.567 4 C 0.189 3.811 5 C -0.087 4.087 6 C -0.107 4.107 7 C 0.069 3.931 8 F -0.140 7.140 9 C -0.096 4.096 10 C -0.190 4.190 11 C 0.483 3.517 12 N -0.680 5.680 13 C 0.157 3.843 14 H 0.088 0.912 15 C -0.117 4.117 16 C 0.016 3.984 17 C -0.492 4.492 18 C 0.078 3.922 19 N -0.889 5.889 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.292 1.292 23 H -0.275 1.275 24 C -0.006 4.006 25 C -0.112 4.112 26 N -0.585 5.585 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.406 0.594 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.007 0.993 37 H 0.061 0.939 38 H 0.266 0.734 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.049 0.951 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 19.008 -1.406 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.108 3.892 3 N -0.289 5.289 4 C 0.062 3.938 5 C -0.106 4.106 6 C -0.128 4.128 7 C 0.049 3.951 8 F -0.119 7.119 9 C -0.117 4.117 10 C -0.199 4.199 11 C 0.226 3.774 12 N -0.307 5.307 13 C 0.055 3.945 14 H 0.106 0.894 15 C -0.156 4.156 16 C -0.022 4.022 17 C -0.511 4.511 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.719 3.281 21 H -0.199 1.199 22 H -0.218 1.218 23 H -0.201 1.201 24 C -0.044 4.044 25 C -0.151 4.151 26 N -0.313 5.313 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.164 0.836 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.243 0.757 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.743 18.689 -1.412 18.757 hybrid contribution 1.448 -0.351 1.038 1.816 sum 2.191 18.339 -0.375 18.473 Atomic orbital electron populations 1.20577 0.86034 1.03947 1.03785 1.22897 0.97648 0.82492 0.86183 1.68663 1.07257 1.28943 1.24028 1.18733 0.89904 0.91852 0.93285 1.20520 0.92550 0.97140 1.00385 1.20936 0.94579 0.97384 0.99935 1.17181 0.77064 0.94169 1.06723 1.91507 1.28737 1.97389 1.94266 1.20658 0.93255 0.97673 1.00116 1.18752 0.94145 0.94765 1.12272 1.18685 0.88781 0.85459 0.84431 1.45367 1.09210 1.03319 1.72839 1.21272 0.94709 0.80167 0.98371 0.89372 1.21988 0.99271 0.96849 0.97458 1.19311 0.94845 0.92246 0.95814 1.20017 1.35175 0.94641 1.01280 1.24832 0.94542 0.95657 0.97486 1.69813 1.41279 1.03523 1.38043 0.86655 0.79942 0.76821 0.84660 1.19892 1.21831 1.20051 1.19573 0.95293 0.93161 0.96417 1.21910 1.00113 0.98507 0.94550 1.67911 1.07137 1.29742 1.26545 0.89661 0.89844 0.89501 0.83572 0.84054 0.84504 0.75723 0.94508 0.92667 0.97444 0.92021 0.92441 0.95926 0.95608 0.93196 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.28 36.01 0.37 -0.57 16 2 C 0.38 5.59 7.62 -157.24 -1.20 4.39 16 3 N -0.57 -8.35 10.32 -8.81 -0.09 -8.44 16 4 C 0.19 2.63 6.61 -84.84 -0.56 2.07 16 5 C -0.09 -0.93 10.00 -39.56 -0.40 -1.33 16 6 C -0.11 -1.03 9.92 -39.85 -0.40 -1.43 16 7 C 0.07 0.77 7.24 -39.74 -0.29 0.48 16 8 F -0.14 -1.61 17.25 2.25 0.04 -1.57 16 9 C -0.10 -1.14 9.50 -39.55 -0.38 -1.52 16 10 C -0.19 -2.67 5.75 -106.69 -0.61 -3.29 16 11 C 0.48 7.54 7.52 -154.95 -1.17 6.38 16 12 N -0.68 -10.30 5.14 -53.53 -0.28 -10.58 16 13 C 0.16 2.84 2.38 -67.98 -0.16 2.68 16 14 H 0.09 1.72 7.57 -51.93 -0.39 1.33 16 15 C -0.12 -2.26 5.40 -26.64 -0.14 -2.40 16 16 C 0.02 0.37 5.96 -27.49 -0.16 0.21 16 17 C -0.49 -12.41 5.51 -98.92 -0.55 -12.96 16 18 C 0.08 2.06 5.46 -17.82 -0.10 1.97 16 19 N -0.89 -24.82 12.74 55.43 0.71 -24.12 16 20 Si 0.89 20.83 26.80 -169.99 -4.56 16.28 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.01 -0.14 5.59 -27.48 -0.15 -0.30 16 25 C -0.11 -2.21 5.51 -26.63 -0.15 -2.35 16 26 N -0.58 -9.62 9.21 -9.70 -0.09 -9.71 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.15 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.14 1.41 6.59 -52.49 -0.35 1.06 16 33 H 0.41 5.20 6.86 -40.82 -0.28 4.92 16 34 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.03 0.58 5.17 -51.93 -0.27 0.31 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -28.75 344.02 -10.56 -39.30 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.44 Total: 1.62 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -6.04 Total: -7.97 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.25 Total: -52.84 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.56 Total: 16.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.75 -10.56 -39.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.550 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds