Wall clock time and date at job start Tue Mar 31 2020 10:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31179 * 118.51285 * 2 1 4 4 C 1.34142 * 120.46576 * 179.97438 * 3 2 1 5 5 C 1.40163 * 121.96099 * 180.20996 * 4 3 2 6 6 C 1.36281 * 119.61943 * 180.26684 * 5 4 3 7 7 C 1.39418 * 121.00245 * 359.49056 * 6 5 4 8 8 F 1.35097 * 119.58032 * 180.25679 * 7 6 5 9 9 C 1.36579 * 120.84412 * 0.28461 * 7 6 5 10 10 C 1.39924 * 119.48862 * 359.97438 * 9 7 6 11 11 C 1.41613 * 122.10708 * 179.97438 * 10 9 7 12 12 N 1.37889 * 120.90548 * 359.97438 * 11 10 9 13 13 C 1.46497 * 119.99894 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.41440 * 35.13586 * 13 12 11 15 15 C 1.52954 * 109.41791 * 155.00027 * 13 12 11 16 16 C 1.53228 * 109.41018 * 183.70047 * 15 13 12 17 17 C 1.51267 * 108.53454 * 305.37638 * 16 15 13 18 18 C 1.37879 * 120.84479 * 231.32033 * 17 16 15 19 19 N 1.31517 * 120.00231 * 359.97438 * 18 17 16 20 20 Si 1.86799 * 119.99977 * 180.02562 * 18 17 16 21 21 H 1.48499 * 109.47091 * 59.99906 * 20 18 17 22 22 H 1.48501 * 109.47243 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.46882 * 300.00034 * 20 18 17 24 24 C 1.51265 * 118.30479 * 51.34634 * 17 16 15 25 25 C 1.52962 * 109.41123 * 275.35321 * 13 12 11 26 26 N 1.32346 * 118.51408 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46327 * 270.01896 * 1 2 3 28 28 H 1.08998 * 109.46922 * 30.01874 * 1 2 3 29 29 H 1.08993 * 109.47040 * 150.02074 * 1 2 3 30 30 H 1.08003 * 120.19189 * 0.03803 * 5 4 3 31 31 H 1.08002 * 119.50331 * 179.77898 * 6 5 4 32 32 H 1.07998 * 120.25686 * 179.97438 * 9 7 6 33 33 H 0.97001 * 120.00182 * 0.02562 * 12 11 10 34 34 H 1.09007 * 109.47850 * 303.68541 * 15 13 12 35 35 H 1.09001 * 109.48248 * 63.71815 * 15 13 12 36 36 H 1.09007 * 109.61891 * 65.08875 * 16 15 13 37 37 H 1.08992 * 109.62587 * 185.45998 * 16 15 13 38 38 H 0.96996 * 120.00299 * 179.97438 * 19 18 17 39 39 H 1.08994 * 109.62700 * 68.36319 * 24 17 16 40 40 H 1.09001 * 109.62313 * 188.93830 * 24 17 16 41 41 H 1.08999 * 109.48186 * 296.27061 * 25 13 12 42 42 H 1.09003 * 109.48616 * 56.31880 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1332 1.1527 0.0000 4 6 3.4739 1.1984 0.0005 5 6 4.1748 2.4121 0.0049 6 6 5.5376 2.4029 -0.0003 7 6 6.2476 1.2031 0.0007 8 9 7.5984 1.2275 0.0007 9 6 5.5951 0.0033 0.0011 10 6 4.1960 -0.0199 0.0011 11 6 3.4633 -1.2317 0.0009 12 7 4.1093 -2.4499 0.0003 13 6 3.3316 -3.6914 -0.0004 14 1 2.4268 -3.5518 -0.5920 15 6 4.1696 -4.8161 -0.6105 16 6 3.3248 -6.0916 -0.6961 17 6 2.7769 -6.3987 0.6800 18 6 2.9297 -7.6500 1.2387 19 7 3.5579 -8.5948 0.5737 20 14 2.2430 -8.0036 2.9395 21 1 0.7734 -7.7900 2.9342 22 1 2.5378 -9.4112 3.3095 23 1 2.8724 -7.0904 3.9271 24 6 2.0566 -5.2983 1.4272 25 6 2.9475 -4.0515 1.4358 26 7 2.1388 -1.1629 0.0005 27 1 -0.3632 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 3.6381 3.3493 0.0086 31 1 6.0758 3.3393 -0.0005 32 1 6.1546 -0.9205 0.0015 33 1 5.0787 -2.4849 0.0004 34 1 4.4934 -4.5267 -1.6103 35 1 5.0427 -4.9997 0.0157 36 1 2.5004 -5.9386 -1.3927 37 1 3.9453 -6.9193 -1.0395 38 1 3.6657 -9.4750 0.9669 39 1 1.1150 -5.0719 0.9273 40 1 1.8632 -5.6171 2.4515 41 1 3.8495 -4.2533 2.0136 42 1 2.4051 -3.2203 1.8865 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157049974.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:20 Heat of formation + Delta-G solvation = -10.190158 kcal Electronic energy + Delta-G solvation = -25835.110571 eV Core-core repulsion = 22113.892897 eV Total energy + Delta-G solvation = -3721.217674 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.94868 -42.35712 -39.48669 -38.50504 -36.80454 -34.36557 -33.22529 -32.41184 -31.87177 -31.41833 -29.13071 -28.55057 -25.56532 -24.05998 -23.98198 -23.25076 -22.74297 -21.31294 -19.66356 -19.39719 -18.56750 -17.98063 -17.23774 -16.84223 -16.78657 -16.43656 -16.20003 -16.04175 -15.30409 -15.11911 -14.88145 -14.67088 -14.56721 -14.38425 -13.99703 -13.95111 -13.88874 -13.55739 -13.15917 -13.11339 -12.78745 -12.61784 -12.55870 -12.45651 -12.13582 -12.04516 -11.88293 -11.69093 -11.53723 -10.92703 -10.68981 -10.56115 -10.30164 -10.15491 -10.08835 -8.73475 -8.18574 -6.12206 -0.66929 -0.36279 0.83850 1.38571 1.40721 1.47795 1.83485 1.90122 2.39705 3.00931 3.05937 3.08226 3.10647 3.21701 3.45930 3.60385 3.87338 4.00565 4.14416 4.17487 4.28636 4.48456 4.56402 4.68178 4.73605 4.78870 4.80399 4.87507 4.93028 4.94027 5.02367 5.02416 5.05185 5.15586 5.20816 5.23817 5.45476 5.54734 5.60800 5.61782 5.73751 5.78721 5.85145 6.06872 6.33016 6.55689 6.93461 7.35554 7.46119 8.92180 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.003587 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.849977 B = 7803.738819 C = 8801.366928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.358 3.642 3 N -0.571 5.571 4 C 0.165 3.835 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.072 3.928 8 F -0.140 7.140 9 C -0.105 4.105 10 C -0.198 4.198 11 C 0.471 3.529 12 N -0.678 5.678 13 C 0.176 3.824 14 H 0.075 0.925 15 C -0.105 4.105 16 C 0.012 3.988 17 C -0.499 4.499 18 C 0.027 3.973 19 N -0.929 5.929 20 Si 0.939 3.061 21 H -0.268 1.268 22 H -0.294 1.294 23 H -0.268 1.268 24 C -0.008 4.008 25 C -0.102 4.102 26 N -0.609 5.609 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.170 0.830 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.417 0.583 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.002 0.998 37 H 0.032 0.968 38 H 0.263 0.737 39 H 0.023 0.977 40 H 0.024 0.976 41 H 0.046 0.954 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 21.976 -0.874 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.089 3.911 3 N -0.292 5.292 4 C 0.039 3.961 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.052 3.948 8 F -0.119 7.119 9 C -0.127 4.127 10 C -0.207 4.207 11 C 0.215 3.785 12 N -0.307 5.307 13 C 0.072 3.928 14 H 0.093 0.907 15 C -0.143 4.143 16 C -0.026 4.026 17 C -0.518 4.518 18 C -0.172 4.172 19 N -0.568 5.568 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.141 4.141 26 N -0.338 5.338 27 H 0.113 0.887 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.187 0.813 31 H 0.195 0.805 32 H 0.167 0.833 33 H 0.256 0.744 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.020 0.980 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.255 21.711 -0.877 21.765 hybrid contribution 1.330 -1.124 0.806 1.919 sum 2.585 20.587 -0.071 20.749 Atomic orbital electron populations 1.20653 0.84004 1.04649 1.04612 1.23478 0.99004 0.82226 0.86413 1.68704 1.07892 1.28825 1.23783 1.19221 0.89934 0.93025 0.93960 1.20790 0.92998 0.96872 0.99722 1.21283 0.94183 0.98216 0.97627 1.17369 0.77092 0.94563 1.05780 1.91517 1.28786 1.97403 1.94157 1.20775 0.92576 0.98821 1.00490 1.18786 0.94928 0.94138 1.12849 1.18845 0.88990 0.85852 0.84798 1.44948 1.09452 1.02297 1.74030 1.20769 0.94246 0.81012 0.96787 0.90736 1.21746 0.98427 0.95248 0.98882 1.19259 0.94812 0.93476 0.95072 1.20596 1.34195 0.95139 1.01913 1.25522 0.95309 0.95836 1.00497 1.69940 1.43468 1.03874 1.39548 0.85871 0.79609 0.76533 0.81430 1.19313 1.22062 1.19284 1.19580 0.95573 0.93601 0.95889 1.21757 0.99349 0.97249 0.95782 1.67912 1.07811 1.30834 1.27273 0.88655 0.88269 0.89614 0.81305 0.80512 0.83296 0.74396 0.92424 0.92793 0.97999 0.94951 0.92749 0.95890 0.95708 0.93512 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 10.28 71.24 0.73 -0.97 16 2 C 0.36 10.28 7.62 138.77 1.06 11.34 16 3 N -0.57 -15.96 10.32 -181.78 -1.88 -17.84 16 4 C 0.16 4.28 6.61 40.09 0.27 4.54 16 5 C -0.08 -1.56 10.00 22.28 0.22 -1.33 16 6 C -0.09 -1.42 9.92 22.10 0.22 -1.20 16 7 C 0.07 1.40 7.24 22.17 0.16 1.56 16 8 F -0.14 -2.79 17.25 44.97 0.78 -2.01 16 9 C -0.11 -2.30 9.50 22.29 0.21 -2.09 16 10 C -0.20 -5.27 5.75 -21.20 -0.12 -5.39 16 11 C 0.47 14.25 7.52 133.99 1.01 15.26 16 12 N -0.68 -19.76 5.14 -323.26 -1.66 -21.43 16 13 C 0.18 6.23 2.38 44.96 0.11 6.33 16 14 H 0.07 2.88 7.57 -2.39 -0.02 2.87 16 15 C -0.10 -3.99 5.40 30.66 0.17 -3.82 16 16 C 0.01 0.57 5.96 30.10 0.18 0.75 16 17 C -0.50 -25.43 5.51 -16.17 -0.09 -25.52 16 18 C 0.03 1.45 5.46 84.65 0.46 1.91 16 19 N -0.93 -53.30 12.74 21.45 0.27 -53.02 16 20 Si 0.94 42.95 26.80 68.60 1.84 44.79 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C -0.01 -0.37 5.59 30.11 0.17 -0.20 16 25 C -0.10 -3.95 5.51 30.66 0.17 -3.79 16 26 N -0.61 -19.66 9.21 -184.60 -1.70 -21.36 16 27 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.15 2.77 6.59 -2.91 -0.02 2.75 16 33 H 0.42 10.07 6.86 -92.71 -0.64 9.43 16 34 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.03 1.72 7.08 -2.39 -0.02 1.70 16 38 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.02 1.09 5.17 -2.39 -0.01 1.08 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -62.50 344.02 3.00 -59.50 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.43 Total: 13.98 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 4.92 Total: -2.62 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.96 Total: -113.64 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.84 Total: 44.79 kcal Total: -62.50 3.00 -59.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157049974.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.313 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds