Wall clock time and date at job start Tue Mar 31 2020 10:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31202 * 118.51795 * 2 1 4 4 C 1.34146 * 120.45926 * 179.97438 * 3 2 1 5 5 C 1.40056 * 121.96648 * 179.97438 * 4 3 2 6 6 C 1.36565 * 119.56774 * 180.02562 * 5 4 3 7 7 F 1.35108 * 119.51317 * 179.97438 * 6 5 4 8 8 C 1.39471 * 120.97473 * 0.02562 * 6 5 4 9 9 C 1.36310 * 120.86836 * 0.02562 * 8 6 5 10 10 C 1.39980 * 119.53090 * 359.97386 * 9 8 6 11 11 C 1.41547 * 122.08577 * 179.97438 * 10 9 8 12 12 N 1.37854 * 120.90695 * 0.02562 * 11 10 9 13 13 C 1.46499 * 120.00070 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.40995 * 324.85628 * 13 12 11 15 15 C 1.52959 * 109.41821 * 84.64457 * 13 12 11 16 16 C 1.53652 * 109.32660 * 183.83330 * 15 13 12 17 17 C 1.51269 * 108.31082 * 305.14051 * 16 15 13 18 18 C 1.37885 * 120.84892 * 231.38027 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.27944 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 0.28022 * 18 17 16 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 17 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 17 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 17 24 24 C 1.51267 * 118.30147 * 51.65779 * 17 16 15 25 25 C 1.52964 * 109.41240 * 204.99805 * 13 12 11 26 26 N 1.32323 * 118.52011 * 180.25611 * 2 1 3 27 27 H 1.09006 * 109.47394 * 89.99583 * 1 2 3 28 28 H 1.08994 * 109.47243 * 209.99427 * 1 2 3 29 29 H 1.08996 * 109.47300 * 329.99945 * 1 2 3 30 30 H 1.07995 * 120.21923 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.56162 * 179.97438 * 8 6 5 32 32 H 1.08001 * 120.23528 * 180.02562 * 9 8 6 33 33 H 0.97007 * 120.00098 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47998 * 303.68926 * 15 13 12 35 35 H 1.08999 * 109.47702 * 63.72290 * 15 13 12 36 36 H 1.09007 * 109.69461 * 185.52287 * 16 15 13 37 37 H 1.09007 * 109.78671 * 64.80813 * 16 15 13 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.63015 * 68.11448 * 24 17 16 40 40 H 1.09007 * 109.62669 * 188.68873 * 24 17 16 41 41 H 1.09002 * 109.47682 * 56.31342 * 25 13 12 42 42 H 1.08997 * 109.48097 * 296.27473 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1334 1.1528 0.0000 4 6 3.4741 1.1983 0.0005 5 6 4.1749 2.4109 0.0000 6 6 5.5405 2.4000 0.0000 7 9 6.2154 3.5704 -0.0010 8 6 6.2487 1.1985 0.0000 9 6 5.5959 0.0019 -0.0005 10 6 4.1963 -0.0205 -0.0005 11 6 3.4637 -1.2317 -0.0016 12 7 4.1092 -2.4497 -0.0022 13 6 3.3313 -3.6911 -0.0039 14 1 2.4262 -3.5521 0.5873 15 6 2.9483 -4.0492 -1.4408 16 6 2.0523 -5.2974 -1.4322 17 6 2.7768 -6.3974 -0.6882 18 6 2.9297 -7.6479 -1.2485 19 7 3.5578 -8.5936 -0.5846 20 14 2.2448 -7.9988 -2.9506 21 1 0.8507 -8.4961 -2.8305 22 1 2.2577 -6.7514 -3.7563 23 1 3.0817 -9.0279 -3.6184 24 6 3.3236 -6.0922 0.6887 25 6 4.1688 -4.8167 0.6054 26 7 2.1388 -1.1626 -0.0052 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 3.6389 3.3484 -0.0004 31 1 7.3286 1.2165 -0.0004 32 1 6.1546 -0.9224 -0.0001 33 1 5.0787 -2.4849 -0.0022 34 1 2.4065 -3.2172 -1.8907 35 1 3.8507 -4.2502 -2.0181 36 1 1.8559 -5.6157 -2.4561 37 1 1.1118 -5.0730 -0.9288 38 1 3.6650 -9.4734 -0.9786 39 1 2.4988 -5.9400 1.3848 40 1 3.9446 -6.9213 1.0281 41 1 4.4919 -4.5287 1.6058 42 1 5.0423 -4.9996 -0.0204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:24 Heat of formation + Delta-G solvation = 5.748504 kcal Electronic energy + Delta-G solvation = -25747.677907 eV Core-core repulsion = 22027.151385 eV Total energy + Delta-G solvation = -3720.526522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.20352 -41.31473 -38.06300 -37.51461 -35.35628 -32.84578 -32.13923 -30.83934 -30.81390 -29.71548 -28.29325 -27.11786 -24.12225 -23.26209 -22.50446 -21.61992 -21.45895 -19.70254 -18.96848 -17.89358 -17.38477 -16.51712 -16.13024 -15.96916 -15.92998 -15.20424 -14.97640 -14.51731 -14.26444 -13.86960 -13.52443 -13.45030 -13.12703 -13.02211 -12.88278 -12.57580 -12.33303 -12.28111 -12.04188 -11.97061 -11.57587 -11.35630 -11.08001 -10.81878 -10.71882 -10.64181 -10.22794 -10.09344 -9.64355 -9.32196 -9.14121 -9.04078 -8.94577 -8.69244 -8.53939 -7.73808 -6.17810 -4.09147 0.29691 0.61558 1.89537 2.76319 3.07456 3.22921 3.31413 3.31959 3.76299 4.04869 4.08612 4.32009 4.33731 4.45342 4.54765 4.72000 5.05797 5.09336 5.17100 5.48617 5.53913 5.61155 5.61850 5.70492 5.74750 5.78087 5.86202 5.91805 6.07603 6.26368 6.36828 6.47524 6.50888 6.59883 6.75663 6.77827 6.85903 6.97416 7.07446 7.28818 7.35588 7.54692 7.60274 7.66768 7.75207 8.29246 8.45051 8.88137 9.46948 10.91563 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003305 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.118346 B = 8470.721796 C = 9196.258838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.385 3.615 3 N -0.573 5.573 4 C 0.223 3.777 5 C -0.160 4.160 6 C 0.146 3.854 7 F -0.136 7.136 8 C -0.184 4.184 9 C -0.026 4.026 10 C -0.225 4.225 11 C 0.488 3.512 12 N -0.680 5.680 13 C 0.156 3.844 14 H 0.088 0.912 15 C -0.110 4.110 16 C -0.017 4.017 17 C -0.490 4.490 18 C 0.077 3.923 19 N -0.890 5.890 20 Si 0.887 3.113 21 H -0.277 1.277 22 H -0.264 1.264 23 H -0.290 1.290 24 C 0.015 3.985 25 C -0.116 4.116 26 N -0.590 5.590 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.405 0.595 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.021 0.979 38 H 0.265 0.735 39 H 0.007 0.993 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 17.463 1.326 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.116 3.884 3 N -0.295 5.295 4 C 0.096 3.904 5 C -0.180 4.180 6 C 0.124 3.876 7 F -0.114 7.114 8 C -0.204 4.204 9 C -0.046 4.046 10 C -0.234 4.234 11 C 0.231 3.769 12 N -0.307 5.307 13 C 0.054 3.946 14 H 0.106 0.894 15 C -0.150 4.150 16 C -0.055 4.055 17 C -0.509 4.509 18 C -0.126 4.126 19 N -0.527 5.527 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.190 1.190 23 H -0.217 1.217 24 C -0.023 4.023 25 C -0.155 4.155 26 N -0.319 5.319 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.242 0.758 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.026 0.974 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.560 17.182 1.324 17.304 hybrid contribution 1.296 -0.098 -0.989 1.633 sum 2.856 17.084 0.336 17.325 Atomic orbital electron populations 1.20588 0.86018 1.03981 1.03834 1.22914 0.97646 0.82443 0.85447 1.68658 1.07176 1.28965 1.24710 1.18255 0.89785 0.90955 0.91385 1.20450 0.91831 0.98501 1.07255 1.17383 0.89720 0.81291 0.99201 1.91523 1.80350 1.46060 1.93490 1.20724 1.01077 0.90826 1.07781 1.20601 0.92223 0.98070 0.93715 1.19059 0.95324 0.94555 1.14482 1.18701 0.88822 0.85497 0.83844 1.45367 1.09189 1.03350 1.72766 1.21289 0.94693 0.80141 0.98471 0.89408 1.21962 1.00052 0.98545 0.94395 1.19850 0.95130 0.93129 0.97373 1.20049 1.34919 0.94732 1.01202 1.24848 0.94594 0.95654 0.97522 1.69830 1.41439 1.03456 1.38002 0.86679 0.79172 0.77770 0.84851 1.20315 1.18973 1.21665 1.19324 0.94861 0.92262 0.95864 1.21983 0.99256 0.96850 0.97413 1.67912 1.07272 1.29689 1.26989 0.89596 0.89452 0.89811 0.83468 0.84248 0.84663 0.75753 0.94324 0.93252 0.94613 0.96042 0.92530 0.97441 0.92012 0.94544 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.28 36.00 0.37 -0.59 16 2 C 0.38 5.76 7.62 -157.25 -1.20 4.56 16 3 N -0.57 -8.69 10.32 -8.82 -0.09 -8.78 16 4 C 0.22 3.21 6.61 -84.86 -0.56 2.65 16 5 C -0.16 -1.96 9.97 -39.50 -0.39 -2.35 16 6 C 0.15 1.63 7.24 -39.73 -0.29 1.34 16 7 F -0.14 -1.49 17.24 2.25 0.04 -1.45 16 8 C -0.18 -1.83 9.93 -39.82 -0.40 -2.23 16 9 C -0.03 -0.27 9.53 -39.62 -0.38 -0.65 16 10 C -0.23 -3.10 5.76 -106.67 -0.61 -3.71 16 11 C 0.49 7.47 7.52 -154.97 -1.16 6.30 16 12 N -0.68 -9.93 5.14 -53.54 -0.28 -10.21 16 13 C 0.16 2.78 2.37 -67.97 -0.16 2.61 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.31 16 15 C -0.11 -2.16 5.53 -26.41 -0.15 -2.30 16 16 C -0.02 -0.37 5.62 -27.27 -0.15 -0.53 16 17 C -0.49 -12.23 5.50 -98.92 -0.54 -12.77 16 18 C 0.08 2.01 5.46 -17.82 -0.10 1.91 16 19 N -0.89 -24.64 12.73 55.43 0.71 -23.93 16 20 Si 0.89 20.42 27.52 -169.99 -4.68 15.74 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.26 -5.91 6.11 56.52 0.35 -5.56 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 25 C -0.12 -2.20 5.40 -26.63 -0.14 -2.35 16 26 N -0.59 -9.67 9.21 -9.72 -0.09 -9.76 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.14 1.11 6.58 -52.49 -0.35 0.76 16 33 H 0.41 4.84 6.85 -40.82 -0.28 4.56 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.80 4.60 -51.92 -0.24 0.57 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 1.58 7.07 -51.93 -0.37 1.21 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -28.56 343.19 -10.72 -39.28 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.47 Total: 1.86 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -6.03 Total: -7.92 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.25 Total: -52.69 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.68 Total: 15.74 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.56 -10.72 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.026 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds