Wall clock time and date at job start Tue Mar 31 2020 10:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31202 * 118.51795 * 2 1 4 4 C 1.34146 * 120.45926 * 179.97438 * 3 2 1 5 5 C 1.40056 * 121.96648 * 179.97438 * 4 3 2 6 6 C 1.36565 * 119.56774 * 180.02562 * 5 4 3 7 7 F 1.35108 * 119.51317 * 179.97438 * 6 5 4 8 8 C 1.39471 * 120.97473 * 0.02562 * 6 5 4 9 9 C 1.36310 * 120.86836 * 0.02562 * 8 6 5 10 10 C 1.39980 * 119.53090 * 359.97386 * 9 8 6 11 11 C 1.41547 * 122.08577 * 179.97438 * 10 9 8 12 12 N 1.37854 * 120.90695 * 0.02562 * 11 10 9 13 13 C 1.46499 * 120.00070 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.40995 * 324.85628 * 13 12 11 15 15 C 1.52959 * 109.41821 * 84.64457 * 13 12 11 16 16 C 1.53652 * 109.32660 * 183.83330 * 15 13 12 17 17 C 1.51269 * 108.31082 * 305.14051 * 16 15 13 18 18 C 1.37885 * 120.84892 * 231.38027 * 17 16 15 19 19 N 1.31516 * 119.99913 * 180.27944 * 18 17 16 20 20 Si 1.86798 * 119.99766 * 0.28022 * 18 17 16 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 17 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 17 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 17 24 24 C 1.51267 * 118.30147 * 51.65779 * 17 16 15 25 25 C 1.52964 * 109.41240 * 204.99805 * 13 12 11 26 26 N 1.32323 * 118.52011 * 180.25611 * 2 1 3 27 27 H 1.09006 * 109.47394 * 89.99583 * 1 2 3 28 28 H 1.08994 * 109.47243 * 209.99427 * 1 2 3 29 29 H 1.08996 * 109.47300 * 329.99945 * 1 2 3 30 30 H 1.07995 * 120.21923 * 0.02562 * 5 4 3 31 31 H 1.08000 * 119.56162 * 179.97438 * 8 6 5 32 32 H 1.08001 * 120.23528 * 180.02562 * 9 8 6 33 33 H 0.97007 * 120.00098 * 359.97438 * 12 11 10 34 34 H 1.09001 * 109.47998 * 303.68926 * 15 13 12 35 35 H 1.08999 * 109.47702 * 63.72290 * 15 13 12 36 36 H 1.09007 * 109.69461 * 185.52287 * 16 15 13 37 37 H 1.09007 * 109.78671 * 64.80813 * 16 15 13 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 17 39 39 H 1.09001 * 109.63015 * 68.11448 * 24 17 16 40 40 H 1.09007 * 109.62669 * 188.68873 * 24 17 16 41 41 H 1.09002 * 109.47682 * 56.31342 * 25 13 12 42 42 H 1.08997 * 109.48097 * 296.27473 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1334 1.1528 0.0000 4 6 3.4741 1.1983 0.0005 5 6 4.1749 2.4109 0.0000 6 6 5.5405 2.4000 0.0000 7 9 6.2154 3.5704 -0.0010 8 6 6.2487 1.1985 0.0000 9 6 5.5959 0.0019 -0.0005 10 6 4.1963 -0.0205 -0.0005 11 6 3.4637 -1.2317 -0.0016 12 7 4.1092 -2.4497 -0.0022 13 6 3.3313 -3.6911 -0.0039 14 1 2.4262 -3.5521 0.5873 15 6 2.9483 -4.0492 -1.4408 16 6 2.0523 -5.2974 -1.4322 17 6 2.7768 -6.3974 -0.6882 18 6 2.9297 -7.6479 -1.2485 19 7 3.5578 -8.5936 -0.5846 20 14 2.2448 -7.9988 -2.9506 21 1 0.8507 -8.4961 -2.8305 22 1 2.2577 -6.7514 -3.7563 23 1 3.0817 -9.0279 -3.6184 24 6 3.3236 -6.0922 0.6887 25 6 4.1688 -4.8167 0.6054 26 7 2.1388 -1.1626 -0.0052 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3634 0.8899 0.5138 30 1 3.6389 3.3484 -0.0004 31 1 7.3286 1.2165 -0.0004 32 1 6.1546 -0.9224 -0.0001 33 1 5.0787 -2.4849 -0.0022 34 1 2.4065 -3.2172 -1.8907 35 1 3.8507 -4.2502 -2.0181 36 1 1.8559 -5.6157 -2.4561 37 1 1.1118 -5.0730 -0.9288 38 1 3.6650 -9.4734 -0.9786 39 1 2.4988 -5.9400 1.3848 40 1 3.9446 -6.9213 1.0281 41 1 4.4919 -4.5287 1.6058 42 1 5.0423 -4.9996 -0.0204 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050087.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:23 Heat of formation + Delta-G solvation = -8.440350 kcal Electronic energy + Delta-G solvation = -25748.293182 eV Core-core repulsion = 22027.151385 eV Total energy + Delta-G solvation = -3721.141797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.08052 -42.35290 -39.44477 -38.51390 -36.78140 -34.35426 -33.33221 -32.18963 -31.78524 -31.38366 -29.33284 -28.63862 -25.25555 -24.23612 -23.90795 -23.25736 -22.75442 -21.28646 -19.95115 -18.98641 -18.54500 -17.90505 -17.25370 -17.07461 -16.87015 -16.42137 -16.30122 -16.18805 -15.21549 -15.08022 -14.85699 -14.65310 -14.38604 -14.25351 -14.03718 -13.98653 -13.90236 -13.53957 -13.18294 -13.09324 -12.88929 -12.77240 -12.58255 -12.44495 -12.21438 -11.94028 -11.82617 -11.55734 -11.35177 -10.89094 -10.67978 -10.54773 -10.23768 -10.11714 -9.97570 -8.84571 -8.16111 -6.09861 -0.66393 -0.36392 0.87024 1.39488 1.43277 1.50062 1.82940 1.91960 2.41739 2.84005 3.00658 3.09208 3.13662 3.39665 3.49183 3.59822 3.90765 4.04186 4.17588 4.19582 4.21051 4.51696 4.57424 4.71832 4.73744 4.77463 4.80882 4.93058 4.95834 4.96884 4.98429 5.01247 5.08549 5.17852 5.25904 5.27915 5.46101 5.57927 5.62429 5.63943 5.76391 5.80474 5.86666 6.08184 6.35698 6.59420 6.96399 7.36737 7.48456 8.94328 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003305 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.118346 B = 8470.721796 C = 9196.258838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.367 3.633 3 N -0.583 5.583 4 C 0.198 3.802 5 C -0.169 4.169 6 C 0.151 3.849 7 F -0.133 7.133 8 C -0.170 4.170 9 C -0.025 4.025 10 C -0.232 4.232 11 C 0.478 3.522 12 N -0.674 5.674 13 C 0.175 3.825 14 H 0.072 0.928 15 C -0.101 4.101 16 C -0.018 4.018 17 C -0.496 4.496 18 C 0.025 3.975 19 N -0.930 5.930 20 Si 0.935 3.065 21 H -0.277 1.277 22 H -0.251 1.251 23 H -0.293 1.293 24 C 0.010 3.990 25 C -0.103 4.103 26 N -0.615 5.615 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.420 0.580 34 H 0.043 0.957 35 H 0.048 0.952 36 H 0.033 0.967 37 H 0.020 0.980 38 H 0.262 0.738 39 H 0.000 1.000 40 H 0.032 0.968 41 H 0.058 0.942 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 19.491 0.787 19.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 N -0.305 5.305 4 C 0.072 3.928 5 C -0.190 4.190 6 C 0.129 3.871 7 F -0.111 7.111 8 C -0.190 4.190 9 C -0.045 4.045 10 C -0.240 4.240 11 C 0.222 3.778 12 N -0.303 5.303 13 C 0.071 3.929 14 H 0.090 0.910 15 C -0.140 4.140 16 C -0.056 4.056 17 C -0.515 4.515 18 C -0.173 4.173 19 N -0.570 5.570 20 Si 0.762 3.238 21 H -0.203 1.203 22 H -0.176 1.176 23 H -0.220 1.220 24 C -0.028 4.028 25 C -0.142 4.142 26 N -0.344 5.344 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.171 0.829 31 H 0.190 0.810 32 H 0.182 0.818 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.039 0.961 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.764 19.269 0.782 19.482 hybrid contribution 0.955 -0.583 -0.753 1.349 sum 3.719 18.686 0.029 19.053 Atomic orbital electron populations 1.20662 0.84063 1.04647 1.04643 1.23465 0.98964 0.82143 0.85632 1.68672 1.07954 1.29116 1.24792 1.18571 0.89840 0.91984 0.92427 1.20532 0.92529 0.98164 1.07750 1.17505 0.89416 0.81879 0.98290 1.91537 1.80156 1.46104 1.93341 1.21076 1.02655 0.89764 1.05458 1.20907 0.90962 0.99678 0.92982 1.19169 0.96685 0.93489 1.14681 1.18852 0.88923 0.85959 0.84063 1.44921 1.09570 1.02087 1.73723 1.20779 0.94252 0.81075 0.96812 0.90959 1.21810 0.99358 0.97169 0.95712 1.19846 0.95394 0.93658 0.96749 1.20623 1.33901 0.95190 1.01830 1.25545 0.95378 0.95837 1.00581 1.69955 1.43661 1.03820 1.39524 0.85888 0.78343 0.77883 0.81649 1.20299 1.17594 1.21977 1.19277 0.94826 0.93629 0.95051 1.21734 0.98422 0.95050 0.98971 1.67912 1.08151 1.30577 1.27803 0.88603 0.89406 0.88456 0.82909 0.81009 0.81817 0.74042 0.93833 0.93299 0.94841 0.96150 0.92842 0.98166 0.94948 0.92316 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.28 71.23 0.73 -1.04 16 2 C 0.37 10.76 7.62 138.77 1.06 11.82 16 3 N -0.58 -17.28 10.32 -181.83 -1.88 -19.15 16 4 C 0.20 5.44 6.61 40.08 0.26 5.70 16 5 C -0.17 -3.87 9.97 22.32 0.22 -3.65 16 6 C 0.15 2.94 7.24 22.18 0.16 3.10 16 7 F -0.13 -2.54 17.24 44.97 0.78 -1.76 16 8 C -0.17 -2.71 9.93 22.12 0.22 -2.49 16 9 C -0.03 -0.45 9.53 22.24 0.21 -0.24 16 10 C -0.23 -5.90 5.76 -21.19 -0.12 -6.02 16 11 C 0.48 13.85 7.52 133.97 1.01 14.86 16 12 N -0.67 -18.19 5.14 -323.31 -1.66 -19.85 16 13 C 0.17 5.95 2.37 44.97 0.11 6.06 16 14 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 15 C -0.10 -3.81 5.53 30.80 0.17 -3.64 16 16 C -0.02 -0.81 5.62 30.25 0.17 -0.64 16 17 C -0.50 -24.83 5.50 -16.17 -0.09 -24.92 16 18 C 0.02 1.32 5.46 84.66 0.46 1.79 16 19 N -0.93 -52.73 12.73 21.45 0.27 -52.46 16 20 Si 0.94 41.98 27.52 68.60 1.89 43.87 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.25 -10.63 6.11 99.48 0.61 -10.03 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 C 0.01 0.48 5.97 30.11 0.18 0.66 16 25 C -0.10 -3.77 5.40 30.66 0.17 -3.61 16 26 N -0.62 -19.66 9.21 -184.65 -1.70 -21.36 16 27 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 32 H 0.16 1.94 6.58 -2.91 -0.02 1.93 16 33 H 0.42 8.70 6.85 -92.70 -0.64 8.06 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.03 1.46 4.60 -2.38 -0.01 1.45 16 37 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.03 1.69 7.07 -2.38 -0.02 1.67 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -62.37 343.19 2.95 -59.42 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.33 Total: 13.55 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 4.92 Total: -2.26 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -4.96 Total: -112.82 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.89 Total: 43.87 kcal Total: -62.37 2.95 -59.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050087.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.980 kcal (2) G-P(sol) polarization free energy of solvation -62.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds