Wall clock time and date at job start Tue Mar 31 2020 11:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 H 1.08996 * 109.47149 * 305.00008 * 3 2 1 5 5 C 1.50705 * 109.47030 * 184.99821 * 3 2 1 6 6 H 1.08003 * 119.99761 * 240.00130 * 5 3 2 7 7 C 1.37870 * 119.99789 * 59.99811 * 5 3 2 8 8 N 1.31510 * 120.00534 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47071 * 119.99877 * 9 7 5 12 12 H 1.48492 * 109.47327 * 240.00280 * 9 7 5 13 13 N 1.46497 * 109.47345 * 64.99780 * 3 2 1 14 14 C 1.38410 * 120.00206 * 275.00022 * 13 3 2 15 15 N 1.32546 * 119.15421 * 0.27450 * 14 13 3 16 16 C 1.32359 * 120.98246 * 180.24441 * 15 14 13 17 17 C 1.38350 * 119.29158 * 359.48697 * 16 15 14 18 18 C 1.50699 * 120.77343 * 180.22987 * 17 16 15 19 19 C 1.39745 * 118.44531 * 0.25182 * 17 16 15 20 20 C 1.48240 * 120.50627 * 180.02562 * 19 17 16 21 21 C 1.39416 * 120.14202 * 50.05616 * 20 19 17 22 22 C 1.37953 * 119.89633 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.18986 * 0.02562 * 22 21 20 24 24 C 1.38235 * 120.28547 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.09447 * 359.74165 * 24 23 22 26 26 F 1.35101 * 120.08988 * 180.25399 * 25 24 23 27 27 N 1.32358 * 119.15696 * 179.97438 * 14 13 3 28 28 H 1.09000 * 109.47278 * 60.00634 * 1 2 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.48043 * 299.99909 * 1 2 3 31 31 H 1.08996 * 109.47238 * 239.99824 * 2 1 3 32 32 H 1.09007 * 109.46970 * 119.99612 * 2 1 3 33 33 H 0.96996 * 120.00858 * 180.02562 * 8 7 5 34 34 H 0.97006 * 120.00015 * 94.99698 * 13 3 2 35 35 H 1.07997 * 120.35345 * 179.76181 * 16 15 14 36 36 H 1.09010 * 109.47063 * 95.52990 * 18 17 16 37 37 H 1.09004 * 109.47118 * 215.52764 * 18 17 16 38 38 H 1.08998 * 109.47405 * 335.53174 * 18 17 16 39 39 H 1.07995 * 120.04935 * 359.95307 * 21 20 19 40 40 H 1.08003 * 119.90817 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.85940 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.94809 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2278 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5464 -0.1941 11 1 6.4971 -0.5175 -1.4627 12 1 6.3990 1.6168 -2.6100 13 7 1.6523 2.0975 1.2517 14 6 0.4022 2.6797 1.3700 15 7 -0.4331 2.6300 0.3420 16 6 -1.6354 3.1789 0.4139 17 6 -2.0254 3.8035 1.5851 18 6 -3.3885 4.4348 1.7053 19 6 -1.1257 3.8356 2.6539 20 6 -1.4963 4.4923 3.9301 21 6 -2.7062 4.1839 4.5506 22 6 -3.0458 4.7977 5.7385 23 6 -2.1894 5.7188 6.3155 24 6 -0.9879 6.0304 5.7070 25 6 -0.6329 5.4177 4.5189 26 9 0.5436 5.7185 3.9269 27 7 0.0692 3.2665 2.5087 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8292 -0.0610 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -2.3064 3.1357 -0.4312 36 1 -4.0757 3.7295 2.1727 37 1 -3.3196 5.3345 2.3169 38 1 -3.7562 4.6971 0.7133 39 1 -3.3765 3.4660 4.1017 40 1 -3.9832 4.5593 6.2190 41 1 -2.4608 6.1965 7.2454 42 1 -0.3234 6.7497 6.1624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:59 Heat of formation + Delta-G solvation = 33.504332 kcal Electronic energy + Delta-G solvation = -25921.199370 eV Core-core repulsion = 22201.876432 eV Total energy + Delta-G solvation = -3719.322939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.78205 -40.62733 -38.93201 -36.40184 -33.84726 -33.50747 -32.05455 -30.82648 -30.63225 -30.24142 -27.42700 -25.69964 -24.65838 -23.00030 -22.93283 -22.11276 -21.35105 -19.64464 -17.99699 -17.75557 -16.92614 -16.40414 -16.13137 -15.51402 -15.45173 -14.85373 -14.75193 -14.55954 -14.14069 -13.83476 -13.75225 -13.38354 -13.22183 -12.98111 -12.67903 -12.56294 -12.38760 -12.10689 -11.99381 -11.61491 -11.28579 -11.25090 -10.95057 -10.88942 -10.55649 -10.41416 -10.21951 -10.11232 -9.65327 -9.47765 -9.10396 -8.98148 -8.72183 -8.53147 -8.36825 -7.06210 -6.12830 -4.21151 0.69942 1.03274 1.73033 1.76318 3.24601 3.32377 3.35447 3.38714 3.75486 4.12448 4.29624 4.37416 4.40320 4.60383 4.70514 4.88759 5.01001 5.13573 5.19149 5.19810 5.27812 5.43342 5.56501 5.66594 5.76822 5.90226 5.95472 6.00131 6.09073 6.16303 6.29166 6.36722 6.42885 6.58626 6.67922 6.78972 7.03180 7.15960 7.35958 7.41447 7.62458 7.71952 7.80422 7.96887 8.20158 8.56171 8.76832 9.11776 9.45570 10.92586 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.003494 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.272825 B = 8012.351966 C = 8919.172708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.281 3.719 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.668 5.668 14 C 0.570 3.430 15 N -0.544 5.544 16 C 0.192 3.808 17 C -0.271 4.271 18 C -0.086 4.086 19 C 0.247 3.753 20 C -0.070 4.070 21 C -0.066 4.066 22 C -0.137 4.137 23 C -0.085 4.085 24 C -0.162 4.162 25 C 0.135 3.865 26 F -0.124 7.124 27 N -0.569 5.569 28 H 0.055 0.945 29 H 0.021 0.979 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.160 0.840 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.426 8.953 12.954 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.179 3.821 4 H 0.073 0.927 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.298 5.298 14 C 0.214 3.786 15 N -0.266 5.266 16 C 0.022 3.978 17 C -0.281 4.281 18 C -0.144 4.144 19 C 0.098 3.902 20 C -0.072 4.072 21 C -0.085 4.085 22 C -0.155 4.155 23 C -0.103 4.103 24 C -0.181 4.181 25 C 0.115 3.885 26 F -0.102 7.102 27 N -0.292 5.292 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.238 0.762 35 H 0.177 0.823 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.231 8.265 12.420 20.618 hybrid contribution 0.717 0.336 0.131 0.803 sum -13.514 8.601 12.551 20.350 Atomic orbital electron populations 1.21815 0.98520 0.97725 1.00789 1.21952 0.92594 0.99848 1.02257 1.18877 0.94113 0.89003 0.80110 0.92655 1.21283 0.90710 1.38883 1.06342 0.92022 1.24845 0.98639 0.94745 0.95307 1.69891 1.35009 1.37747 1.09337 0.86394 0.84833 0.77768 0.78141 1.19725 1.20850 1.20858 1.45249 1.09784 1.55754 1.18979 1.19464 0.88194 0.87002 0.83972 1.68253 1.04517 1.23380 1.30470 1.22737 0.91588 0.88036 0.95444 1.20934 0.99703 1.10651 0.96821 1.20471 0.92270 0.99517 1.02168 1.19297 0.88501 0.91134 0.91308 1.18552 0.95384 0.98434 0.94845 1.21135 0.94416 0.98374 0.94551 1.21094 1.00492 0.97951 0.95968 1.21070 0.92978 0.96833 0.99432 1.21117 0.99080 1.02680 0.95185 1.17755 0.82087 0.96403 0.92277 1.91567 1.44034 1.91487 1.83152 1.67990 1.18889 1.16846 1.25464 0.92559 0.96036 0.95146 0.88098 0.95196 0.92629 0.76158 0.82301 0.92057 0.92063 0.91850 0.84609 0.85043 0.84999 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.43 37.16 0.31 -2.53 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.28 7.12 2.24 -69.08 -0.15 6.96 16 4 H 0.06 1.56 7.51 -51.93 -0.39 1.18 16 5 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.53 11.29 55.43 0.63 -23.90 16 9 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -15.25 5.15 -56.95 -0.29 -15.54 16 14 C 0.57 12.27 7.00 -322.91 -2.26 10.01 16 15 N -0.54 -11.10 6.32 -13.99 -0.09 -11.19 16 16 C 0.19 3.12 10.97 -17.28 -0.19 2.93 16 17 C -0.27 -4.00 5.90 -104.02 -0.61 -4.62 16 18 C -0.09 -0.88 8.50 36.01 0.31 -0.58 16 19 C 0.25 4.15 6.08 -82.63 -0.50 3.65 16 20 C -0.07 -0.98 4.95 -104.84 -0.52 -1.49 16 21 C -0.07 -0.68 8.12 -39.25 -0.32 -1.00 16 22 C -0.14 -1.10 10.03 -39.63 -0.40 -1.50 16 23 C -0.08 -0.68 10.04 -39.53 -0.40 -1.08 16 24 C -0.16 -1.67 10.02 -39.56 -0.40 -2.06 16 25 C 0.14 1.88 7.25 -39.05 -0.28 1.60 16 26 F -0.12 -2.09 16.49 2.25 0.04 -2.05 16 27 N -0.57 -11.40 9.99 -10.47 -0.10 -11.51 16 28 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.65 5.59 -51.93 -0.29 0.36 16 31 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 32 H 0.03 0.72 8.14 -51.92 -0.42 0.29 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.40 8.84 8.65 -40.82 -0.35 8.49 16 35 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.06 0.52 7.28 -51.92 -0.38 0.14 16 37 H 0.06 0.61 6.97 -51.93 -0.36 0.25 16 38 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.14 1.21 6.78 -52.49 -0.36 0.85 16 40 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 42 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -30.61 348.10 -10.88 -41.49 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.33 Total: 7.44 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -5.95 Total: -5.93 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: 0.14 Total: -62.14 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.61 -10.88 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.999 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds