Wall clock time and date at job start Tue Mar 31 2020 11:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 H 1.08996 * 109.47149 * 305.00008 * 3 2 1 5 5 C 1.50705 * 109.47030 * 184.99821 * 3 2 1 6 6 H 1.08003 * 119.99761 * 240.00130 * 5 3 2 7 7 C 1.37870 * 119.99789 * 59.99811 * 5 3 2 8 8 N 1.31510 * 120.00534 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47071 * 119.99877 * 9 7 5 12 12 H 1.48492 * 109.47327 * 240.00280 * 9 7 5 13 13 N 1.46497 * 109.47345 * 64.99780 * 3 2 1 14 14 C 1.38410 * 120.00206 * 275.00022 * 13 3 2 15 15 N 1.32546 * 119.15421 * 0.27450 * 14 13 3 16 16 C 1.32359 * 120.98246 * 180.24441 * 15 14 13 17 17 C 1.38350 * 119.29158 * 359.48697 * 16 15 14 18 18 C 1.50699 * 120.77343 * 180.22987 * 17 16 15 19 19 C 1.39745 * 118.44531 * 0.25182 * 17 16 15 20 20 C 1.48240 * 120.50627 * 180.02562 * 19 17 16 21 21 C 1.39416 * 120.14202 * 50.05616 * 20 19 17 22 22 C 1.37953 * 119.89633 * 179.97438 * 21 20 19 23 23 C 1.38385 * 120.18986 * 0.02562 * 22 21 20 24 24 C 1.38235 * 120.28547 * 359.97438 * 23 22 21 25 25 C 1.38302 * 120.09447 * 359.74165 * 24 23 22 26 26 F 1.35101 * 120.08988 * 180.25399 * 25 24 23 27 27 N 1.32358 * 119.15696 * 179.97438 * 14 13 3 28 28 H 1.09000 * 109.47278 * 60.00634 * 1 2 3 29 29 H 1.09004 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.48043 * 299.99909 * 1 2 3 31 31 H 1.08996 * 109.47238 * 239.99824 * 2 1 3 32 32 H 1.09007 * 109.46970 * 119.99612 * 2 1 3 33 33 H 0.96996 * 120.00858 * 180.02562 * 8 7 5 34 34 H 0.97006 * 120.00015 * 94.99698 * 13 3 2 35 35 H 1.07997 * 120.35345 * 179.76181 * 16 15 14 36 36 H 1.09010 * 109.47063 * 95.52990 * 18 17 16 37 37 H 1.09004 * 109.47118 * 215.52764 * 18 17 16 38 38 H 1.08998 * 109.47405 * 335.53174 * 18 17 16 39 39 H 1.07995 * 120.04935 * 359.95307 * 21 20 19 40 40 H 1.08003 * 119.90817 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.85940 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.94809 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2278 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5464 -0.1941 11 1 6.4971 -0.5175 -1.4627 12 1 6.3990 1.6168 -2.6100 13 7 1.6523 2.0975 1.2517 14 6 0.4022 2.6797 1.3700 15 7 -0.4331 2.6300 0.3420 16 6 -1.6354 3.1789 0.4139 17 6 -2.0254 3.8035 1.5851 18 6 -3.3885 4.4348 1.7053 19 6 -1.1257 3.8356 2.6539 20 6 -1.4963 4.4923 3.9301 21 6 -2.7062 4.1839 4.5506 22 6 -3.0458 4.7977 5.7385 23 6 -2.1894 5.7188 6.3155 24 6 -0.9879 6.0304 5.7070 25 6 -0.6329 5.4177 4.5189 26 9 0.5436 5.7185 3.9269 27 7 0.0692 3.2665 2.5087 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8292 -0.0610 -2.9498 34 1 2.2718 2.1232 1.9978 35 1 -2.3064 3.1357 -0.4312 36 1 -4.0757 3.7295 2.1727 37 1 -3.3196 5.3345 2.3169 38 1 -3.7562 4.6971 0.7133 39 1 -3.3765 3.4660 4.1017 40 1 -3.9832 4.5593 6.2190 41 1 -2.4608 6.1965 7.2454 42 1 -0.3234 6.7497 6.1624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055311.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:58 Heat of formation + Delta-G solvation = 17.787240 kcal Electronic energy + Delta-G solvation = -25921.880915 eV Core-core repulsion = 22201.876432 eV Total energy + Delta-G solvation = -3720.004483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.88449 -41.97477 -39.82193 -38.08330 -35.32364 -34.88135 -33.80521 -32.36127 -31.58198 -31.24100 -29.15511 -27.11421 -25.82910 -24.89073 -23.81319 -23.18394 -22.70085 -21.39191 -19.57069 -18.86577 -18.16027 -17.98252 -17.23359 -16.80250 -16.65302 -16.51519 -16.25975 -15.57564 -15.50179 -15.15681 -14.95679 -14.65006 -14.48694 -14.33502 -14.05619 -13.70351 -13.48105 -13.40102 -13.20134 -12.93201 -12.86265 -12.76194 -12.71273 -12.26752 -12.14758 -12.07330 -11.74971 -11.64317 -11.48247 -11.14868 -10.85967 -10.48453 -9.95680 -9.86009 -9.62478 -8.62467 -8.19101 -6.35139 -0.27434 0.24879 0.37245 0.60797 1.39632 1.40846 1.52715 2.16777 2.43020 2.63681 3.00686 3.09465 3.12936 3.30824 3.60128 3.79536 3.99257 4.09005 4.16277 4.26288 4.37451 4.39741 4.51984 4.56520 4.57451 4.75654 4.85875 4.94318 5.07120 5.11124 5.12871 5.15806 5.21561 5.26410 5.36209 5.43036 5.45514 5.51027 5.57583 5.74980 5.82569 5.92421 6.04347 6.13073 6.36030 6.74052 6.86088 7.32397 7.58613 8.85996 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.003494 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.272825 B = 8012.351966 C = 8919.172708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.119 4.119 3 C 0.297 3.703 4 H 0.018 0.982 5 C -0.555 4.555 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.907 5.907 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.274 1.274 12 H -0.279 1.279 13 N -0.684 5.684 14 C 0.551 3.449 15 N -0.574 5.574 16 C 0.176 3.824 17 C -0.251 4.251 18 C -0.083 4.083 19 C 0.228 3.772 20 C -0.098 4.098 21 C -0.065 4.065 22 C -0.121 4.121 23 C -0.071 4.071 24 C -0.162 4.162 25 C 0.094 3.906 26 F -0.155 7.155 27 N -0.591 5.591 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.401 0.599 35 H 0.194 0.806 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.389 9.895 15.067 25.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.036 0.964 5 C -0.594 4.594 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.545 5.545 9 Si 0.792 3.208 10 H -0.195 1.195 11 H -0.200 1.200 12 H -0.204 1.204 13 N -0.317 5.317 14 C 0.194 3.806 15 N -0.297 5.297 16 C 0.008 3.992 17 C -0.259 4.259 18 C -0.141 4.141 19 C 0.081 3.919 20 C -0.100 4.100 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.088 4.088 24 C -0.181 4.181 25 C 0.074 3.926 26 F -0.134 7.134 27 N -0.314 5.314 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.236 0.764 35 H 0.211 0.789 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.169 0.831 40 H 0.190 0.810 41 H 0.190 0.810 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.278 9.246 14.554 24.410 hybrid contribution 1.405 0.182 -0.381 1.467 sum -15.873 9.428 14.173 23.275 Atomic orbital electron populations 1.21603 0.96368 0.98661 1.00335 1.21785 0.94460 0.99021 1.00608 1.18399 0.93023 0.89017 0.80152 0.96401 1.21581 0.91894 1.39242 1.06640 0.92516 1.25637 1.03060 0.94238 0.94866 1.70008 1.36732 1.38073 1.09696 0.85383 0.79428 0.78007 0.78020 1.19512 1.19988 1.20434 1.44882 1.10982 1.57752 1.18043 1.19488 0.88035 0.88073 0.85025 1.68212 1.06038 1.24858 1.30619 1.23430 0.90771 0.87678 0.97276 1.21486 1.01241 1.08056 0.95123 1.20599 0.89607 0.99972 1.03902 1.20018 0.87757 0.90673 0.93476 1.18654 0.97254 0.99496 0.94565 1.21384 0.93082 0.98618 0.95286 1.21588 1.01577 0.96213 0.94502 1.21590 0.91339 0.95801 1.00113 1.21402 1.00395 1.02470 0.93831 1.18276 0.81732 0.98505 0.94114 1.91482 1.45920 1.91997 1.83977 1.67973 1.20975 1.17421 1.25067 0.93270 0.94180 0.95253 0.90500 0.95736 0.92392 0.76426 0.78908 0.89335 0.91418 0.89884 0.83084 0.80990 0.80998 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.99 8.43 71.98 0.61 -4.39 16 2 C -0.12 -6.10 5.45 30.59 0.17 -5.93 16 3 C 0.30 15.99 2.24 44.25 0.10 16.09 16 4 H 0.02 1.09 7.51 -2.39 -0.02 1.08 16 5 C -0.56 -31.45 8.73 25.60 0.22 -31.22 16 6 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -52.08 11.29 21.44 0.24 -51.84 16 9 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.68 -33.42 5.15 -334.08 -1.72 -35.14 16 14 C 0.55 24.99 7.00 261.52 1.83 26.83 16 15 N -0.57 -24.32 6.32 -198.19 -1.25 -25.58 16 16 C 0.18 5.66 10.97 84.64 0.93 6.59 16 17 C -0.25 -7.10 5.90 -19.47 -0.11 -7.21 16 18 C -0.08 -1.41 8.50 71.24 0.61 -0.81 16 19 C 0.23 7.72 6.08 41.97 0.26 7.98 16 20 C -0.10 -2.64 4.95 -20.01 -0.10 -2.74 16 21 C -0.06 -1.13 8.12 22.49 0.18 -0.95 16 22 C -0.12 -1.34 10.03 22.24 0.22 -1.12 16 23 C -0.07 -0.81 10.04 22.30 0.22 -0.59 16 24 C -0.16 -3.02 10.02 22.28 0.22 -2.80 16 25 C 0.09 2.62 7.25 22.61 0.16 2.78 16 26 F -0.16 -5.55 16.49 44.97 0.74 -4.81 16 27 N -0.59 -24.85 9.99 -187.05 -1.87 -26.72 16 28 H 0.05 2.22 7.64 -2.39 -0.02 2.20 16 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.03 1.29 5.59 -2.39 -0.01 1.28 16 31 H 0.08 4.29 5.95 -2.39 -0.01 4.28 16 32 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.40 19.06 8.65 -92.70 -0.80 18.26 16 35 H 0.19 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.09 1.10 7.28 -2.38 -0.02 1.08 16 37 H 0.07 1.12 6.97 -2.39 -0.02 1.11 16 38 H 0.08 1.13 8.07 -2.39 -0.02 1.11 16 39 H 0.15 2.08 6.78 -2.91 -0.02 2.06 16 40 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 41 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 42 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -72.72 348.10 4.39 -68.33 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.26 Total: 25.51 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.97 Total: 4.23 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -4.60 Total: -139.28 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.74 Total: -4.81 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.72 4.39 -68.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055311.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.116 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds