Wall clock time and date at job start Tue Mar 31 2020 10:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31127 * 126.54805 * 2 1 4 4 C 1.34500 * 105.61480 * 180.12456 * 3 2 1 5 5 C 1.50698 * 126.28883 * 179.90437 * 4 3 2 6 6 H 1.09001 * 109.46173 * 14.71532 * 5 4 3 7 7 C 1.53033 * 109.46322 * 254.73715 * 5 4 3 8 8 C 1.53119 * 109.28182 * 180.81670 * 7 5 4 9 9 C 1.53124 * 109.15906 * 57.64972 * 8 7 5 10 10 C 1.53032 * 109.27822 * 302.34796 * 9 8 7 11 11 N 1.46841 * 109.45439 * 134.68986 * 5 4 3 12 12 C 1.38831 * 110.99737 * 305.84882 * 11 5 4 13 13 C 1.39963 * 119.96981 * 120.14857 * 12 11 5 14 14 N 1.32126 * 120.31419 * 179.75173 * 13 12 11 15 15 C 1.31932 * 120.27887 * 0.52325 * 14 13 12 16 16 C 1.40680 * 119.92554 * 359.72927 * 15 14 13 17 17 C 1.41283 * 120.15122 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99541 * 155.27303 * 17 16 15 19 19 C 1.40050 * 120.00107 * 335.28064 * 17 16 15 20 20 N 1.30734 * 120.00056 * 342.05570 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 162.06044 * 19 17 16 22 22 H 1.48496 * 109.46875 * 85.06182 * 21 19 17 23 23 H 1.48506 * 109.46760 * 205.05768 * 21 19 17 24 24 H 1.48494 * 109.47089 * 325.05867 * 21 19 17 25 25 N 1.32244 * 119.97282 * 300.41943 * 12 11 5 26 26 N 1.29947 * 107.42029 * 359.64323 * 4 3 2 27 27 O 1.21298 * 110.25103 * 0.22726 * 26 4 3 28 28 H 1.09004 * 109.47002 * 180.30338 * 1 2 3 29 29 H 1.09000 * 109.46785 * 300.29438 * 1 2 3 30 30 H 1.08993 * 109.47326 * 60.29714 * 1 2 3 31 31 H 1.09005 * 109.50587 * 300.75715 * 7 5 4 32 32 H 1.09005 * 109.50503 * 60.87496 * 7 5 4 33 33 H 1.08997 * 109.52505 * 177.55875 * 8 7 5 34 34 H 1.09006 * 109.52286 * 297.68607 * 8 7 5 35 35 H 1.09000 * 109.49853 * 62.29358 * 9 8 7 36 36 H 1.09001 * 109.50057 * 182.36918 * 9 8 7 37 37 H 1.09000 * 109.46260 * 179.19615 * 10 9 8 38 38 H 1.09000 * 109.46355 * 299.16383 * 10 9 8 39 39 H 1.07996 * 119.84152 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.03686 * 179.75265 * 15 14 13 41 41 H 0.96995 * 119.99885 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8111 1.3887 -0.0060 6 1 4.5789 2.4212 0.2553 7 6 5.4422 1.3451 -1.3995 8 6 6.7396 2.1583 -1.3927 9 6 7.6825 1.5913 -0.3278 10 6 6.9865 1.6279 1.0346 11 7 5.7518 0.8351 0.9763 12 6 5.1627 0.7387 2.2297 13 6 5.0529 -0.5078 2.8567 14 7 4.4980 -0.6066 4.0517 15 6 4.0331 0.4677 4.6602 16 6 4.1330 1.7254 4.0377 17 6 3.6362 2.8789 4.6847 18 1 4.0384 3.8508 4.4397 19 6 2.6224 2.7620 5.6439 20 7 1.8957 1.6765 5.6980 21 14 2.3084 4.1571 6.8458 22 1 1.4040 5.1550 6.2204 23 1 1.6751 3.6175 8.0759 24 1 3.5964 4.8075 7.1966 25 7 4.7011 1.8240 2.8279 26 7 3.4645 -0.7241 0.0034 27 8 2.3029 -1.0735 0.0050 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3633 0.5184 0.8873 30 1 -0.3633 0.5092 -0.8926 31 1 5.6620 0.3115 -1.6672 32 1 4.7499 1.7705 -2.1261 33 1 7.2148 2.0942 -2.3715 34 1 6.5152 3.2003 -1.1642 35 1 7.9376 0.5617 -0.5787 36 1 8.5911 2.1922 -0.2891 37 1 7.6499 1.2117 1.7927 38 1 6.7441 2.6592 1.2910 39 1 5.4276 -1.3924 2.3633 40 1 3.5766 0.3819 5.6352 41 1 1.1934 1.5958 6.3620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166717177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:15 Heat of formation + Delta-G solvation = 110.140133 kcal Electronic energy + Delta-G solvation = -27115.501767 eV Core-core repulsion = 23419.421968 eV Total energy + Delta-G solvation = -3696.079799 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.13578 -39.86482 -38.14595 -35.42099 -34.30841 -33.55702 -33.27528 -31.81774 -30.62401 -28.96976 -28.49716 -26.25769 -24.96290 -23.81295 -22.85571 -22.12991 -21.67431 -20.87743 -19.27057 -17.79748 -17.69794 -17.12015 -16.15053 -15.97728 -15.16209 -15.01853 -14.89558 -14.55271 -14.24829 -13.72760 -13.61255 -13.36111 -13.29659 -13.07212 -12.90876 -12.60406 -12.26036 -11.78069 -11.71251 -11.52138 -11.31643 -11.27116 -11.00464 -10.94912 -10.69792 -10.64126 -10.59490 -10.53884 -10.29600 -9.91072 -9.74201 -9.40857 -9.20924 -8.41473 -7.70023 -7.34006 -7.06057 -4.72900 1.59873 2.36460 2.65660 2.72853 2.96091 3.00036 3.08935 3.21783 3.75375 3.80449 4.23239 4.41117 4.53869 4.91586 5.03773 5.09402 5.28629 5.32396 5.36651 5.42919 5.55341 5.60683 5.73604 5.76541 5.82848 5.94276 5.98417 6.02472 6.04230 6.12320 6.18098 6.22276 6.26530 6.39917 6.45283 6.54752 6.86228 6.91166 7.16907 7.29175 7.51046 7.85231 8.10860 8.38848 8.56250 8.65059 9.12153 9.60410 9.91612 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.005611 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.202944 B = 4989.240605 C = 6145.326988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.164 3.836 3 N -0.473 5.473 4 C 0.186 3.814 5 C 0.186 3.814 6 H 0.081 0.919 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.065 3.935 11 N -0.469 5.469 12 C 0.253 3.747 13 C -0.057 4.057 14 N -0.441 5.441 15 C 0.006 3.994 16 C 0.237 3.763 17 C -0.425 4.425 18 H 0.088 0.912 19 C 0.077 3.923 20 N -0.784 5.784 21 Si 0.923 3.077 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.258 1.258 25 N -0.549 5.549 26 N -0.354 5.354 27 O 0.073 5.927 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 0.020 -10.369 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 N -0.207 5.207 4 C -0.088 4.088 5 C 0.077 3.923 6 H 0.099 0.901 7 C -0.145 4.145 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.062 4.062 11 N -0.194 5.194 12 C 0.019 3.981 13 C -0.216 4.216 14 N -0.153 5.153 15 C -0.164 4.164 16 C 0.108 3.892 17 C -0.459 4.459 18 H 0.106 0.894 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.746 3.254 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.182 1.182 25 N -0.271 5.271 26 N -0.060 5.060 27 O 0.013 5.987 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.149 0.851 40 H 0.176 0.824 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.804 -0.689 -10.440 10.494 hybrid contribution -0.749 1.278 0.918 1.743 sum 0.055 0.590 -9.522 9.541 Atomic orbital electron populations 1.20292 0.80755 1.05109 1.05329 1.28693 0.98799 0.81075 0.97127 1.71811 1.00324 1.28914 1.19636 1.25371 0.94483 0.88128 1.00794 1.19710 0.84293 0.95069 0.93257 0.90091 1.21631 0.96948 1.01735 0.94235 1.21558 0.95305 0.99438 0.99167 1.21627 0.97690 1.01832 0.94268 1.22033 0.90221 0.96573 0.97415 1.60071 1.04533 1.50880 1.03873 1.20407 0.95751 0.91608 0.90336 1.22378 1.08792 0.95725 0.94666 1.67962 1.06470 1.32800 1.08088 1.23780 1.02325 0.89055 1.01232 1.19166 0.88874 0.94211 0.86972 1.19304 1.16026 0.94334 1.16222 0.89369 1.26012 0.94033 0.97487 0.96898 1.69734 1.14082 1.27283 1.29818 0.86079 0.79798 0.80518 0.79011 1.19056 1.19754 1.18156 1.68836 1.17283 1.30719 1.10300 1.74609 0.96335 1.15649 1.19425 1.85290 1.11823 1.35908 1.65705 0.88864 0.88055 0.88331 0.90673 0.91360 0.91475 0.91793 0.91012 0.91350 0.90642 0.93356 0.85051 0.82450 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 36.01 0.38 -0.23 16 2 C 0.16 2.78 8.51 -13.06 -0.11 2.66 16 3 N -0.47 -9.53 11.55 -9.87 -0.11 -9.64 16 4 C 0.19 3.81 5.86 -156.37 -0.92 2.90 16 5 C 0.19 3.55 2.19 -68.88 -0.15 3.40 16 6 H 0.08 1.71 8.00 -51.93 -0.42 1.30 16 7 C -0.11 -1.57 5.36 -26.65 -0.14 -1.71 16 8 C -0.12 -1.43 6.00 -26.61 -0.16 -1.59 16 9 C -0.12 -1.50 6.09 -26.65 -0.16 -1.67 16 10 C 0.06 1.11 5.29 -3.84 -0.02 1.09 16 11 N -0.47 -9.43 4.47 -166.83 -0.74 -10.18 16 12 C 0.25 6.12 4.20 -155.01 -0.65 5.47 16 13 C -0.06 -1.45 11.17 -16.78 -0.19 -1.64 16 14 N -0.44 -11.80 10.47 -12.11 -0.13 -11.93 16 15 C 0.01 0.17 9.88 -16.59 -0.16 0.01 16 16 C 0.24 6.56 6.41 -84.83 -0.54 6.01 16 17 C -0.43 -11.26 9.28 -37.75 -0.35 -11.61 16 18 H 0.09 2.29 7.91 -52.49 -0.42 1.88 16 19 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 20 N -0.78 -19.50 10.97 55.55 0.61 -18.89 16 21 Si 0.92 17.90 29.60 -169.99 -5.03 12.87 16 22 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 25 N -0.55 -14.50 9.86 -10.14 -0.10 -14.60 16 26 N -0.35 -7.25 12.14 30.90 0.37 -6.88 16 27 O 0.07 1.35 11.31 18.12 0.20 1.56 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 38 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 39 H 0.13 3.15 8.06 -52.49 -0.42 2.73 16 40 H 0.16 4.30 6.17 -52.49 -0.32 3.98 16 41 H 0.29 6.42 8.29 -40.82 -0.34 6.08 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -31.84 345.43 -8.35 -40.19 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.36 Total: 7.42 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -3.27 Total: 4.87 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.10 Total: -72.12 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.84 -8.35 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166717177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.332 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds