Wall clock time and date at job start Tue Mar 31 2020 10:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31127 * 126.54805 * 2 1 4 4 C 1.34500 * 105.61480 * 180.12456 * 3 2 1 5 5 C 1.50698 * 126.28883 * 179.90437 * 4 3 2 6 6 H 1.09001 * 109.46173 * 14.71532 * 5 4 3 7 7 C 1.53033 * 109.46322 * 254.73715 * 5 4 3 8 8 C 1.53119 * 109.28182 * 180.81670 * 7 5 4 9 9 C 1.53124 * 109.15906 * 57.64972 * 8 7 5 10 10 C 1.53032 * 109.27822 * 302.34796 * 9 8 7 11 11 N 1.46841 * 109.45439 * 134.68986 * 5 4 3 12 12 C 1.38831 * 110.99737 * 305.84882 * 11 5 4 13 13 C 1.39963 * 119.96981 * 120.14857 * 12 11 5 14 14 N 1.32126 * 120.31419 * 179.75173 * 13 12 11 15 15 C 1.31932 * 120.27887 * 0.52325 * 14 13 12 16 16 C 1.40680 * 119.92554 * 359.72927 * 15 14 13 17 17 C 1.41283 * 120.15122 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99541 * 155.27303 * 17 16 15 19 19 C 1.40050 * 120.00107 * 335.28064 * 17 16 15 20 20 N 1.30734 * 120.00056 * 342.05570 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 162.06044 * 19 17 16 22 22 H 1.48496 * 109.46875 * 85.06182 * 21 19 17 23 23 H 1.48506 * 109.46760 * 205.05768 * 21 19 17 24 24 H 1.48494 * 109.47089 * 325.05867 * 21 19 17 25 25 N 1.32244 * 119.97282 * 300.41943 * 12 11 5 26 26 N 1.29947 * 107.42029 * 359.64323 * 4 3 2 27 27 O 1.21298 * 110.25103 * 0.22726 * 26 4 3 28 28 H 1.09004 * 109.47002 * 180.30338 * 1 2 3 29 29 H 1.09000 * 109.46785 * 300.29438 * 1 2 3 30 30 H 1.08993 * 109.47326 * 60.29714 * 1 2 3 31 31 H 1.09005 * 109.50587 * 300.75715 * 7 5 4 32 32 H 1.09005 * 109.50503 * 60.87496 * 7 5 4 33 33 H 1.08997 * 109.52505 * 177.55875 * 8 7 5 34 34 H 1.09006 * 109.52286 * 297.68607 * 8 7 5 35 35 H 1.09000 * 109.49853 * 62.29358 * 9 8 7 36 36 H 1.09001 * 109.50057 * 182.36918 * 9 8 7 37 37 H 1.09000 * 109.46260 * 179.19615 * 10 9 8 38 38 H 1.09000 * 109.46355 * 299.16383 * 10 9 8 39 39 H 1.07996 * 119.84152 * 0.02562 * 13 12 11 40 40 H 1.07997 * 120.03686 * 179.75265 * 15 14 13 41 41 H 0.96995 * 119.99885 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0028 5 6 4.8111 1.3887 -0.0060 6 1 4.5789 2.4212 0.2553 7 6 5.4422 1.3451 -1.3995 8 6 6.7396 2.1583 -1.3927 9 6 7.6825 1.5913 -0.3278 10 6 6.9865 1.6279 1.0346 11 7 5.7518 0.8351 0.9763 12 6 5.1627 0.7387 2.2297 13 6 5.0529 -0.5078 2.8567 14 7 4.4980 -0.6066 4.0517 15 6 4.0331 0.4677 4.6602 16 6 4.1330 1.7254 4.0377 17 6 3.6362 2.8789 4.6847 18 1 4.0384 3.8508 4.4397 19 6 2.6224 2.7620 5.6439 20 7 1.8957 1.6765 5.6980 21 14 2.3084 4.1571 6.8458 22 1 1.4040 5.1550 6.2204 23 1 1.6751 3.6175 8.0759 24 1 3.5964 4.8075 7.1966 25 7 4.7011 1.8240 2.8279 26 7 3.4645 -0.7241 0.0034 27 8 2.3029 -1.0735 0.0050 28 1 -0.3633 -1.0277 0.0054 29 1 -0.3633 0.5184 0.8873 30 1 -0.3633 0.5092 -0.8926 31 1 5.6620 0.3115 -1.6672 32 1 4.7499 1.7705 -2.1261 33 1 7.2148 2.0942 -2.3715 34 1 6.5152 3.2003 -1.1642 35 1 7.9376 0.5617 -0.5787 36 1 8.5911 2.1922 -0.2891 37 1 7.6499 1.2117 1.7927 38 1 6.7441 2.6592 1.2910 39 1 5.4276 -1.3924 2.3633 40 1 3.5766 0.3819 5.6352 41 1 1.1934 1.5958 6.3620 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166717177.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:14 Heat of formation + Delta-G solvation = 86.396126 kcal Electronic energy + Delta-G solvation = -27116.531385 eV Core-core repulsion = 23419.421968 eV Total energy + Delta-G solvation = -3697.109417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.60909 -41.62827 -39.80943 -36.87302 -36.16565 -35.17893 -34.65204 -33.67493 -31.91489 -30.80492 -29.68046 -28.21534 -26.47115 -25.28219 -24.26444 -24.04494 -23.42031 -22.23606 -20.62633 -19.65126 -19.17500 -18.62093 -18.04083 -17.67372 -17.17130 -16.71038 -16.45260 -15.90113 -15.56868 -15.08960 -15.03958 -14.85450 -14.39980 -14.30913 -14.24383 -14.09326 -13.59328 -13.52331 -13.38784 -13.14580 -13.00302 -12.80213 -12.68388 -12.33099 -12.12443 -12.08060 -11.95805 -11.82739 -11.72633 -11.66317 -11.53378 -11.09082 -10.83030 -10.11777 -9.67829 -9.31408 -8.93621 -6.76409 0.19735 0.40580 0.76419 1.16681 1.35219 1.45552 1.53151 1.95002 2.11843 2.39134 2.50804 2.70350 3.17326 3.48618 3.68104 3.80649 3.91205 3.98385 4.01446 4.16633 4.20268 4.26395 4.36778 4.46614 4.55396 4.56714 4.61564 4.68148 4.77395 4.84975 4.88064 4.94960 4.98860 5.01449 5.06983 5.10845 5.13151 5.24653 5.40238 5.51416 5.80035 5.98502 6.07332 6.41446 6.58339 7.08321 7.20387 7.57090 8.07121 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.005611 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.202944 B = 4989.240605 C = 6145.326988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.174 3.826 3 N -0.513 5.513 4 C 0.170 3.830 5 C 0.187 3.813 6 H 0.053 0.947 7 C -0.098 4.098 8 C -0.112 4.112 9 C -0.106 4.106 10 C 0.061 3.939 11 N -0.468 5.468 12 C 0.270 3.730 13 C -0.076 4.076 14 N -0.449 5.449 15 C -0.021 4.021 16 C 0.213 3.787 17 C -0.450 4.450 18 H 0.084 0.916 19 C 0.041 3.959 20 N -0.806 5.806 21 Si 1.002 2.998 22 H -0.258 1.258 23 H -0.256 1.256 24 H -0.256 1.256 25 N -0.567 5.567 26 N -0.375 5.375 27 O 0.069 5.931 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 0.931 -11.343 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 N -0.247 5.247 4 C -0.103 4.103 5 C 0.077 3.923 6 H 0.071 0.929 7 C -0.137 4.137 8 C -0.149 4.149 9 C -0.143 4.143 10 C -0.065 4.065 11 N -0.193 5.193 12 C 0.035 3.965 13 C -0.235 4.235 14 N -0.161 5.161 15 C -0.190 4.190 16 C 0.084 3.916 17 C -0.483 4.483 18 H 0.102 0.898 19 C -0.178 4.178 20 N -0.431 5.431 21 Si 0.820 3.180 22 H -0.182 1.182 23 H -0.179 1.179 24 H -0.180 1.180 25 N -0.290 5.290 26 N -0.082 5.082 27 O 0.010 5.990 28 H 0.143 0.857 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.418 0.208 -11.417 11.427 hybrid contribution -0.727 0.964 1.175 1.684 sum -0.309 1.172 -10.242 10.314 Atomic orbital electron populations 1.20700 0.76484 1.07654 1.06502 1.29864 1.00654 0.79878 0.94216 1.71816 1.00759 1.30431 1.21712 1.25701 0.95191 0.88466 1.00988 1.19839 0.84193 0.93057 0.95185 0.92913 1.21645 0.98252 1.02434 0.91330 1.21588 0.93858 0.98725 1.00736 1.21620 0.98327 1.03016 0.91367 1.22194 0.89040 0.94867 1.00425 1.60204 1.05328 1.51802 1.02004 1.20706 0.93785 0.90722 0.91316 1.22554 1.09666 0.96603 0.94658 1.67862 1.06511 1.32904 1.08844 1.23611 1.04542 0.89401 1.01467 1.19507 0.89576 0.94819 0.87669 1.19603 1.17090 0.93856 1.17737 0.89783 1.26995 0.92730 1.00382 0.97710 1.69751 1.14090 1.28948 1.30270 0.84928 0.79773 0.76751 0.76574 1.18207 1.17921 1.17985 1.68934 1.18136 1.31695 1.10248 1.74562 0.97434 1.15699 1.20532 1.85241 1.11581 1.36327 1.65872 0.85697 0.88322 0.85249 0.90655 0.90150 0.87858 0.91806 0.90357 0.88365 0.91379 0.95108 0.84213 0.83158 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.09 10.51 71.24 0.75 -0.34 16 2 C 0.17 5.84 8.51 88.38 0.75 6.59 16 3 N -0.51 -21.02 11.55 -303.21 -3.50 -24.52 16 4 C 0.17 7.11 5.86 138.46 0.81 7.92 16 5 C 0.19 7.24 2.19 44.19 0.10 7.34 16 6 H 0.05 2.32 8.00 -2.39 -0.02 2.30 16 7 C -0.10 -2.75 5.36 30.65 0.16 -2.59 16 8 C -0.11 -2.44 6.00 30.68 0.18 -2.25 16 9 C -0.11 -2.49 6.09 30.65 0.19 -2.30 16 10 C 0.06 2.11 5.29 86.32 0.46 2.57 16 11 N -0.47 -19.18 4.47 -681.73 -3.04 -22.23 16 12 C 0.27 13.53 4.20 133.37 0.56 14.09 16 13 C -0.08 -3.98 11.17 85.07 0.95 -3.03 16 14 N -0.45 -24.98 10.47 -192.24 -2.01 -27.00 16 15 C -0.02 -1.20 9.88 85.27 0.84 -0.36 16 16 C 0.21 12.24 6.41 40.16 0.26 12.50 16 17 C -0.45 -24.54 9.28 23.46 0.22 -24.32 16 18 H 0.08 4.51 7.91 -2.91 -0.02 4.49 16 19 C 0.04 2.00 5.13 85.30 0.44 2.44 16 20 N -0.81 -40.42 10.97 21.84 0.24 -40.18 16 21 Si 1.00 36.03 29.60 68.60 2.03 38.06 16 22 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 23 H -0.26 -8.45 7.11 99.48 0.71 -7.74 16 24 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 25 N -0.57 -31.25 9.86 -185.99 -1.83 -33.08 16 26 N -0.37 -15.57 12.14 -60.33 -0.73 -16.30 16 27 O 0.07 2.57 11.31 74.90 0.85 3.42 16 28 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 2.40 8.10 -2.39 -0.02 2.38 16 38 H 0.03 1.16 8.07 -2.39 -0.02 1.14 16 39 H 0.14 6.91 8.06 -2.91 -0.02 6.88 16 40 H 0.15 8.60 6.17 -2.91 -0.02 8.59 16 41 H 0.30 13.31 8.29 -92.71 -0.77 12.54 16 Total: -1.00 -73.18 345.43 -0.29 -73.47 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 1.05 Total: 30.10 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.67 Total: 18.25 kcal Atomic # 7 Polarization: -152.42 SS G_CDS: -10.89 Total: -163.31 kcal Atomic # 8 Polarization: 2.57 SS G_CDS: 0.85 Total: 3.42 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -73.18 -0.29 -73.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166717177.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.869 kcal (2) G-P(sol) polarization free energy of solvation -73.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds