Wall clock time and date at job start Tue Mar 31 2020 11:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47359 * 2 1 4 4 C 1.53006 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.36993 * 120.00152 * 269.99638 * 5 4 3 7 7 H 1.07999 * 119.99205 * 42.98677 * 6 5 4 8 8 C 1.38825 * 120.00169 * 222.99052 * 6 5 4 9 9 N 1.31540 * 119.99991 * 13.89721 * 8 6 5 10 10 Si 1.86804 * 119.99716 * 193.90314 * 8 6 5 11 11 H 1.48494 * 109.47149 * 59.99740 * 10 8 6 12 12 H 1.48497 * 109.46785 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47125 * 299.99514 * 10 8 6 14 14 C 1.38448 * 120.00236 * 90.00271 * 5 4 3 15 15 N 1.32576 * 119.15217 * 186.13400 * 14 5 4 16 16 C 1.32327 * 120.98200 * 180.02562 * 15 14 5 17 17 C 1.38405 * 119.28378 * 359.71967 * 16 15 14 18 18 C 1.39800 * 118.44814 * 0.54190 * 17 16 15 19 19 C 1.48261 * 120.50992 * 179.73227 * 18 17 16 20 20 C 1.39420 * 120.09727 * 352.67207 * 19 18 17 21 21 C 1.37940 * 119.89550 * 180.27475 * 20 19 18 22 22 C 1.38581 * 120.09719 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.89713 * 179.97438 * 22 21 20 24 24 C 1.38582 * 120.20553 * 0.02562 * 22 21 20 25 25 C 1.37933 * 120.09471 * 359.97438 * 24 22 21 26 26 N 1.32397 * 119.15051 * 6.15084 * 14 5 4 27 27 H 1.08993 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46750 * 299.99730 * 1 2 3 29 29 H 1.09005 * 109.47210 * 59.99186 * 1 2 3 30 30 H 1.09000 * 109.46750 * 240.00270 * 2 1 3 31 31 H 1.08996 * 109.47369 * 120.00658 * 2 1 3 32 32 H 1.08998 * 109.47386 * 60.00087 * 3 2 1 33 33 H 1.09006 * 109.47352 * 300.00087 * 3 2 1 34 34 H 1.09000 * 109.47082 * 60.00210 * 4 3 2 35 35 H 1.08997 * 109.47021 * 299.99968 * 4 3 2 36 36 H 0.97001 * 119.99819 * 184.94172 * 9 8 6 37 37 H 1.07993 * 120.35899 * 180.02562 * 16 15 14 38 38 H 1.08003 * 120.77726 * 180.29310 * 17 16 15 39 39 H 1.08001 * 120.05231 * 0.27821 * 20 19 18 40 40 H 1.07999 * 119.94762 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.95218 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.04722 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2864 3.4700 -1.1861 7 1 3.5773 3.3789 -1.9956 8 6 5.4288 4.2421 -1.3475 9 7 6.4178 4.1414 -0.4861 10 14 5.5614 5.4241 -2.7879 11 1 4.4626 6.4203 -2.7135 12 1 6.8692 6.1254 -2.7339 13 1 5.4575 4.6667 -4.0610 14 6 4.2898 3.4755 1.1992 15 7 4.6131 4.7611 1.1835 16 6 4.8425 5.4196 2.3081 17 6 4.7363 4.7532 3.5166 18 6 4.3994 3.3965 3.5015 19 6 4.2791 2.6367 4.7690 20 6 4.6490 3.2278 5.9763 21 6 4.5408 2.5152 7.1523 22 6 4.0657 1.2135 7.1349 23 9 3.9618 0.5190 8.2891 24 6 3.6978 0.6215 5.9370 25 6 3.8027 1.3266 4.7562 26 7 4.1828 2.7989 2.3322 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8909 35 1 3.9338 0.9284 0.8891 36 1 7.1847 4.7310 -0.5571 37 1 5.1048 6.4669 2.2836 38 1 4.9136 5.2683 4.4491 39 1 5.0197 4.2421 5.9907 40 1 4.8275 2.9721 8.0880 41 1 3.3285 -0.3933 5.9281 42 1 3.5154 0.8647 3.8232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:00 Heat of formation + Delta-G solvation = 37.920844 kcal Electronic energy + Delta-G solvation = -25750.631703 eV Core-core repulsion = 22031.500279 eV Total energy + Delta-G solvation = -3719.131424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.85650 -39.83423 -38.50942 -36.47933 -34.33456 -32.82741 -31.95715 -31.22754 -30.46598 -29.01450 -27.87816 -24.98100 -23.80698 -23.53834 -22.56150 -21.35614 -20.88471 -20.38119 -18.13429 -17.55958 -16.59488 -15.98704 -15.65895 -15.54351 -15.05016 -14.89247 -14.76590 -14.43757 -13.97861 -13.58690 -13.46637 -13.40822 -13.33247 -13.12179 -12.87745 -12.44212 -12.32788 -12.03997 -11.72109 -11.44582 -11.39221 -10.98311 -10.95066 -10.77287 -10.68804 -10.64251 -10.34816 -9.97933 -9.80523 -9.56375 -9.22811 -9.03246 -8.69649 -8.12925 -7.68910 -6.79230 -6.14319 -3.95757 0.91879 1.35739 2.48157 2.57368 3.25123 3.29488 3.32450 3.85786 4.06394 4.30777 4.47992 4.80091 4.84640 4.92492 5.09523 5.26530 5.29820 5.33426 5.40927 5.43618 5.50856 5.66226 5.82910 5.94007 5.98335 6.06100 6.07249 6.09634 6.17712 6.21813 6.25248 6.27031 6.32442 6.41563 6.45951 6.51659 6.65549 6.77652 6.85833 6.93465 7.01719 7.45761 7.50485 8.05281 8.31673 8.84049 9.07567 9.53367 10.01309 10.80453 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.004381 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.548584 B = 6389.633540 C = 8281.133734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.129 3.871 5 N -0.410 5.410 6 C -0.325 4.325 7 H 0.084 0.916 8 C 0.072 3.928 9 N -0.833 5.833 10 Si 0.917 3.083 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.552 3.448 15 N -0.506 5.506 16 C 0.182 3.818 17 C -0.336 4.336 18 C 0.231 3.769 19 C -0.035 4.035 20 C -0.072 4.072 21 C -0.159 4.159 22 C 0.092 3.908 23 F -0.145 7.145 24 C -0.160 4.160 25 C -0.053 4.053 26 N -0.584 5.584 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.140 0.860 38 H 0.118 0.882 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 -3.994 9.318 11.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.168 4.168 4 C 0.004 3.996 5 N -0.106 5.106 6 C -0.453 4.453 7 H 0.101 0.899 8 C -0.139 4.139 9 N -0.465 5.465 10 Si 0.743 3.257 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.203 1.203 14 C 0.200 3.800 15 N -0.227 5.227 16 C 0.008 3.992 17 C -0.366 4.366 18 C 0.081 3.919 19 C -0.037 4.037 20 C -0.091 4.091 21 C -0.178 4.178 22 C 0.073 3.927 23 F -0.124 7.124 24 C -0.179 4.179 25 C -0.072 4.072 26 N -0.309 5.309 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.298 -4.665 8.083 10.732 hybrid contribution 0.516 1.116 0.453 1.311 sum -4.782 -3.549 8.536 10.408 Atomic orbital electron populations 1.21753 0.96428 1.00840 1.01631 1.21442 0.95282 0.97382 1.01655 1.21967 0.97184 0.95745 1.01930 1.21397 0.92446 0.84146 1.01575 1.41765 1.58952 1.08798 1.01080 1.19069 1.04531 1.31368 0.90312 0.89858 1.25202 0.93456 0.97876 0.97345 1.69864 1.06150 1.34327 1.36193 0.86205 0.77541 0.80865 0.81060 1.19804 1.21141 1.20284 1.19165 0.90823 0.84925 0.85076 1.68036 1.16884 1.08838 1.28962 1.22553 0.90497 0.98670 0.87441 1.21859 1.18785 0.96417 0.99557 1.19257 0.92280 0.90249 0.90075 1.18726 0.99560 0.93801 0.91580 1.21124 0.97406 1.00111 0.90494 1.20984 1.03847 0.93366 0.99631 1.17834 1.02280 0.91006 0.81615 1.91470 1.94074 1.79114 1.47738 1.21103 1.04175 1.01352 0.91290 1.21253 0.94997 0.93064 0.97900 1.67625 1.26166 1.39537 0.97557 0.93286 0.93003 0.92986 0.92262 0.92182 0.92378 0.92239 0.91611 0.91248 0.92267 0.84253 0.86443 0.84431 0.84809 0.84836 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.13 -2.25 5.54 -26.73 -0.15 -2.40 16 4 C 0.13 2.64 5.43 -4.04 -0.02 2.61 16 5 N -0.41 -10.18 2.60 -117.06 -0.30 -10.48 16 6 C -0.32 -8.48 9.20 -15.03 -0.14 -8.62 16 7 H 0.08 2.10 7.87 -52.49 -0.41 1.68 16 8 C 0.07 1.88 4.43 -17.46 -0.08 1.81 16 9 N -0.83 -23.15 11.36 55.49 0.63 -22.52 16 10 Si 0.92 20.56 29.58 -169.99 -5.03 15.53 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 14 C 0.55 13.89 7.28 -322.76 -2.35 11.54 16 15 N -0.51 -12.78 7.22 -13.96 -0.10 -12.88 16 16 C 0.18 3.86 11.29 -17.28 -0.20 3.66 16 17 C -0.34 -6.39 9.52 -38.94 -0.37 -6.76 16 18 C 0.23 4.62 6.75 -82.62 -0.56 4.06 16 19 C -0.04 -0.58 5.87 -104.90 -0.62 -1.20 16 20 C -0.07 -0.97 9.43 -39.25 -0.37 -1.34 16 21 C -0.16 -1.95 10.01 -39.56 -0.40 -2.34 16 22 C 0.09 1.20 7.30 -39.33 -0.29 0.92 16 23 F -0.15 -1.89 17.26 2.25 0.04 -1.85 16 24 C -0.16 -2.10 10.01 -39.57 -0.40 -2.49 16 25 C -0.05 -0.80 9.59 -39.26 -0.38 -1.18 16 26 N -0.58 -13.20 8.25 -10.44 -0.09 -13.28 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 35 H 0.07 1.42 7.24 -51.93 -0.38 1.04 16 36 H 0.27 7.17 8.32 -40.82 -0.34 6.83 16 37 H 0.14 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.12 1.79 6.38 -52.48 -0.33 1.46 16 39 H 0.14 1.61 6.32 -52.49 -0.33 1.28 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.14 2.24 7.59 -52.48 -0.40 1.84 16 LS Contribution 358.01 15.07 5.40 5.40 Total: -1.00 -29.73 358.01 -11.18 -40.91 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.63 Total: 4.13 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -6.09 Total: -4.95 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.14 Total: -59.17 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.73 -11.18 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.834 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds