Wall clock time and date at job start Tue Mar 31 2020 11:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47359 * 2 1 4 4 C 1.53006 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47008 * 180.02562 * 4 3 2 6 6 C 1.36993 * 120.00152 * 269.99638 * 5 4 3 7 7 H 1.07999 * 119.99205 * 42.98677 * 6 5 4 8 8 C 1.38825 * 120.00169 * 222.99052 * 6 5 4 9 9 N 1.31540 * 119.99991 * 13.89721 * 8 6 5 10 10 Si 1.86804 * 119.99716 * 193.90314 * 8 6 5 11 11 H 1.48494 * 109.47149 * 59.99740 * 10 8 6 12 12 H 1.48497 * 109.46785 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47125 * 299.99514 * 10 8 6 14 14 C 1.38448 * 120.00236 * 90.00271 * 5 4 3 15 15 N 1.32576 * 119.15217 * 186.13400 * 14 5 4 16 16 C 1.32327 * 120.98200 * 180.02562 * 15 14 5 17 17 C 1.38405 * 119.28378 * 359.71967 * 16 15 14 18 18 C 1.39800 * 118.44814 * 0.54190 * 17 16 15 19 19 C 1.48261 * 120.50992 * 179.73227 * 18 17 16 20 20 C 1.39420 * 120.09727 * 352.67207 * 19 18 17 21 21 C 1.37940 * 119.89550 * 180.27475 * 20 19 18 22 22 C 1.38581 * 120.09719 * 0.02562 * 21 20 19 23 23 F 1.35101 * 119.89713 * 179.97438 * 22 21 20 24 24 C 1.38582 * 120.20553 * 0.02562 * 22 21 20 25 25 C 1.37933 * 120.09471 * 359.97438 * 24 22 21 26 26 N 1.32397 * 119.15051 * 6.15084 * 14 5 4 27 27 H 1.08993 * 109.47678 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46750 * 299.99730 * 1 2 3 29 29 H 1.09005 * 109.47210 * 59.99186 * 1 2 3 30 30 H 1.09000 * 109.46750 * 240.00270 * 2 1 3 31 31 H 1.08996 * 109.47369 * 120.00658 * 2 1 3 32 32 H 1.08998 * 109.47386 * 60.00087 * 3 2 1 33 33 H 1.09006 * 109.47352 * 300.00087 * 3 2 1 34 34 H 1.09000 * 109.47082 * 60.00210 * 4 3 2 35 35 H 1.08997 * 109.47021 * 299.99968 * 4 3 2 36 36 H 0.97001 * 119.99819 * 184.94172 * 9 8 6 37 37 H 1.07993 * 120.35899 * 180.02562 * 16 15 14 38 38 H 1.08003 * 120.77726 * 180.29310 * 17 16 15 39 39 H 1.08001 * 120.05231 * 0.27821 * 20 19 18 40 40 H 1.07999 * 119.94762 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.95218 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.04722 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 0.0000 6 6 4.2864 3.4700 -1.1861 7 1 3.5773 3.3789 -1.9956 8 6 5.4288 4.2421 -1.3475 9 7 6.4178 4.1414 -0.4861 10 14 5.5614 5.4241 -2.7879 11 1 4.4626 6.4203 -2.7135 12 1 6.8692 6.1254 -2.7339 13 1 5.4575 4.6667 -4.0610 14 6 4.2898 3.4755 1.1992 15 7 4.6131 4.7611 1.1835 16 6 4.8425 5.4196 2.3081 17 6 4.7363 4.7532 3.5166 18 6 4.3994 3.3965 3.5015 19 6 4.2791 2.6367 4.7690 20 6 4.6490 3.2278 5.9763 21 6 4.5408 2.5152 7.1523 22 6 4.0657 1.2135 7.1349 23 9 3.9618 0.5190 8.2891 24 6 3.6978 0.6215 5.9370 25 6 3.8027 1.3266 4.7562 26 7 4.1828 2.7989 2.3322 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8909 35 1 3.9338 0.9284 0.8891 36 1 7.1847 4.7310 -0.5571 37 1 5.1048 6.4669 2.2836 38 1 4.9136 5.2683 4.4491 39 1 5.0197 4.2421 5.9907 40 1 4.8275 2.9721 8.0880 41 1 3.3285 -0.3933 5.9281 42 1 3.5154 0.8647 3.8232 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:59 Heat of formation + Delta-G solvation = 26.316634 kcal Electronic energy + Delta-G solvation = -25751.134900 eV Core-core repulsion = 22031.500279 eV Total energy + Delta-G solvation = -3719.634621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.89216 -41.41745 -39.74392 -38.07994 -35.76158 -34.38544 -33.70621 -32.47361 -31.82855 -30.38413 -29.37140 -26.74492 -25.26320 -24.92154 -23.77263 -22.70236 -22.30792 -21.85160 -19.77908 -18.67680 -18.15047 -17.48058 -17.01226 -16.58873 -16.57336 -16.41855 -16.09091 -15.91772 -15.61255 -15.16556 -14.83402 -14.69303 -14.53217 -14.38680 -14.04218 -13.84225 -13.64558 -13.35158 -13.18525 -12.98997 -12.93056 -12.72338 -12.28185 -12.18008 -12.05131 -11.98118 -11.86133 -11.41973 -11.38316 -11.17123 -10.88644 -10.53349 -10.07250 -9.45819 -9.38076 -8.61967 -8.01635 -5.93524 -0.30229 0.31296 0.80980 1.12599 1.44396 1.50131 1.54292 2.30556 2.68492 2.76443 3.20803 3.25000 3.42335 3.65553 3.77076 3.96581 4.00369 4.05672 4.13082 4.29396 4.32816 4.37490 4.48928 4.63154 4.65451 4.71965 4.75582 4.86297 4.92285 4.97348 5.00719 5.03206 5.13775 5.13843 5.16802 5.31577 5.32591 5.40993 5.48296 5.51275 5.57087 5.87432 5.93115 6.17920 6.61819 7.00636 7.25324 7.69427 8.24522 8.87155 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012184 B = 0.004381 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.548584 B = 6389.633540 C = 8281.133734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C -0.113 4.113 4 C 0.131 3.869 5 N -0.435 5.435 6 C -0.342 4.342 7 H 0.082 0.918 8 C 0.033 3.967 9 N -0.869 5.869 10 Si 0.976 3.024 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.266 1.266 14 C 0.538 3.462 15 N -0.549 5.549 16 C 0.162 3.838 17 C -0.323 4.323 18 C 0.221 3.779 19 C -0.065 4.065 20 C -0.063 4.063 21 C -0.150 4.150 22 C 0.095 3.905 23 F -0.142 7.142 24 C -0.158 4.158 25 C -0.062 4.062 26 N -0.597 5.597 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -4.119 11.586 13.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.152 4.152 4 C 0.007 3.993 5 N -0.134 5.134 6 C -0.470 4.470 7 H 0.099 0.901 8 C -0.174 4.174 9 N -0.504 5.504 10 Si 0.801 3.199 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.191 1.191 14 C 0.185 3.815 15 N -0.271 5.271 16 C -0.009 4.009 17 C -0.351 4.351 18 C 0.072 3.928 19 C -0.066 4.066 20 C -0.082 4.082 21 C -0.168 4.168 22 C 0.075 3.925 23 F -0.121 7.121 24 C -0.176 4.176 25 C -0.081 4.081 26 N -0.323 5.323 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.799 -4.784 10.393 12.827 hybrid contribution 0.627 1.110 0.039 1.275 sum -5.172 -3.674 10.432 12.210 Atomic orbital electron populations 1.21721 0.94772 1.02276 1.01494 1.21408 0.96646 0.94631 1.02427 1.21797 0.94995 0.98077 1.00326 1.21459 0.94215 0.82626 1.00987 1.41979 1.60544 1.10019 1.00873 1.19262 1.04545 1.32127 0.91074 0.90087 1.25910 0.92983 0.99122 0.99368 1.69999 1.06661 1.35345 1.38357 0.85285 0.76988 0.78844 0.78754 1.20071 1.21266 1.19052 1.19445 0.90736 0.85428 0.85898 1.67983 1.18569 1.09431 1.31142 1.23158 0.90193 1.00018 0.87505 1.22302 1.16180 0.96070 1.00548 1.19994 0.90886 0.91284 0.90634 1.18732 1.02402 0.94419 0.91020 1.21312 0.96325 1.01001 0.89574 1.21293 1.02321 0.92776 1.00412 1.17993 1.01552 0.91397 0.81522 1.91488 1.93954 1.79130 1.47488 1.21234 1.03630 1.02141 0.90601 1.21178 0.95596 0.93048 0.98262 1.67687 1.26998 1.39700 0.97872 0.91023 0.93324 0.92992 0.91316 0.91569 0.94246 0.93373 0.91883 0.91879 0.92975 0.81584 0.82114 0.82309 0.81544 0.82823 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.11 -3.06 5.93 30.59 0.18 -2.88 16 3 C -0.11 -4.07 5.54 30.59 0.17 -3.90 16 4 C 0.13 5.62 5.43 86.38 0.47 6.09 16 5 N -0.44 -22.64 2.60 -524.28 -1.36 -24.00 16 6 C -0.34 -18.60 9.20 84.03 0.77 -17.83 16 7 H 0.08 4.26 7.87 -2.91 -0.02 4.24 16 8 C 0.03 1.77 4.43 84.88 0.38 2.15 16 9 N -0.87 -50.08 11.36 21.65 0.25 -49.84 16 10 Si 0.98 43.39 29.58 68.60 2.03 45.42 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 14 C 0.54 28.07 7.28 261.47 1.90 29.97 16 15 N -0.55 -28.52 7.22 -198.09 -1.43 -29.95 16 16 C 0.16 6.86 11.29 84.66 0.96 7.82 16 17 C -0.32 -11.80 9.52 22.69 0.22 -11.58 16 18 C 0.22 8.75 6.75 42.00 0.28 9.04 16 19 C -0.06 -2.03 5.87 -20.04 -0.12 -2.15 16 20 C -0.06 -1.49 9.43 22.48 0.21 -1.28 16 21 C -0.15 -3.04 10.01 22.28 0.22 -2.82 16 22 C 0.10 2.17 7.30 22.43 0.16 2.33 16 23 F -0.14 -3.19 17.26 44.97 0.78 -2.42 16 24 C -0.16 -3.78 10.01 22.28 0.22 -3.56 16 25 C -0.06 -1.82 9.59 22.48 0.22 -1.60 16 26 N -0.60 -27.78 8.25 -186.94 -1.54 -29.32 16 27 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.06 2.65 8.04 -2.39 -0.02 2.63 16 35 H 0.06 2.72 7.24 -2.39 -0.02 2.70 16 36 H 0.26 14.54 8.32 -92.71 -0.77 13.77 16 37 H 0.17 5.81 8.06 -2.91 -0.02 5.78 16 38 H 0.16 4.31 6.38 -2.91 -0.02 4.30 16 39 H 0.16 3.01 6.32 -2.91 -0.02 2.99 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 41 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 42 H 0.13 4.14 7.59 -2.91 -0.02 4.12 16 Total: -1.00 -67.38 358.01 6.70 -60.68 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 1.02 Total: 22.23 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.96 Total: 7.19 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -4.09 Total: -133.10 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -67.38 6.70 -60.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.997 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds