Wall clock time and date at job start Tue Mar 31 2020 11:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47093 * 2 1 4 4 C 1.53000 * 109.46744 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46954 * 179.97438 * 4 3 2 6 6 C 1.36915 * 119.99685 * 89.99873 * 5 4 3 7 7 H 1.07998 * 120.00055 * 314.52411 * 6 5 4 8 8 C 1.38862 * 119.99890 * 134.24948 * 6 5 4 9 9 N 1.31525 * 120.00125 * 159.66188 * 8 6 5 10 10 Si 1.86797 * 119.99710 * 339.66106 * 8 6 5 11 11 H 1.48507 * 109.47205 * 95.68357 * 10 8 6 12 12 H 1.48505 * 109.47254 * 215.68262 * 10 8 6 13 13 H 1.48497 * 109.47558 * 335.67997 * 10 8 6 14 14 C 1.38547 * 120.00027 * 269.99866 * 5 4 3 15 15 C 1.39453 * 120.49427 * 167.53687 * 14 5 4 16 16 C 1.39330 * 118.20944 * 179.78702 * 15 14 5 17 17 C 1.48273 * 120.51099 * 180.21661 * 16 15 14 18 18 C 1.39410 * 120.10140 * 10.65372 * 17 16 15 19 19 C 1.37940 * 119.90169 * 179.81165 * 18 17 16 20 20 C 1.38583 * 120.09539 * 0.44397 * 19 18 17 21 21 F 1.35101 * 119.89862 * 179.76686 * 20 19 18 22 22 C 1.38570 * 120.20094 * 359.78417 * 20 19 18 23 23 C 1.37943 * 120.10044 * 0.02562 * 22 20 19 24 24 N 1.33392 * 118.97553 * 0.48700 * 16 15 14 25 25 C 1.31663 * 120.88714 * 359.75132 * 24 16 15 26 26 N 1.31760 * 121.98841 * 359.97438 * 25 24 16 27 27 H 1.09008 * 109.46821 * 300.00476 * 1 2 3 28 28 H 1.08991 * 109.47012 * 59.99741 * 1 2 3 29 29 H 1.09000 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47015 * 239.99468 * 2 1 3 31 31 H 1.09004 * 109.47259 * 119.99650 * 2 1 3 32 32 H 1.08994 * 109.47625 * 59.99841 * 3 2 1 33 33 H 1.08998 * 109.46966 * 299.99519 * 3 2 1 34 34 H 1.09001 * 109.47300 * 59.99915 * 4 3 2 35 35 H 1.08996 * 109.47599 * 299.99579 * 4 3 2 36 36 H 0.96997 * 119.99877 * 179.97438 * 9 8 6 37 37 H 1.08005 * 120.89802 * 0.02562 * 15 14 5 38 38 H 1.08004 * 120.05149 * 0.02562 * 18 17 16 39 39 H 1.07999 * 119.95327 * 180.20509 * 19 18 17 40 40 H 1.08009 * 119.95474 * 179.97438 * 22 20 19 41 41 H 1.08001 * 120.04830 * 179.97438 * 23 22 20 42 42 H 1.08001 * 119.00430 * 180.02562 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2871 3.4694 1.1842 7 1 3.5594 3.4110 1.9801 8 6 5.4573 4.1947 1.3653 9 7 5.5192 5.1214 2.2966 10 14 6.9435 3.8543 0.2861 11 1 6.9614 4.8124 -0.8484 12 1 8.1838 4.0127 1.0873 13 1 6.8670 2.4672 -0.2386 14 6 4.2889 3.4764 -1.2014 15 6 4.5011 4.8545 -1.2281 16 6 4.7327 5.4614 -2.4607 17 6 4.9693 6.9226 -2.5476 18 6 5.1825 7.6666 -1.3881 19 6 5.4060 9.0251 -1.4741 20 6 5.4097 9.6518 -2.7101 21 9 5.6244 10.9833 -2.7893 22 6 5.1935 8.9171 -3.8649 23 6 4.9730 7.5575 -3.7887 24 7 4.7331 4.7086 -3.5618 25 6 4.5234 3.4105 -3.4931 26 7 4.3060 2.7983 -2.3469 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9338 0.9285 0.8891 36 1 6.3368 5.6277 2.4233 37 1 4.4900 5.4351 -0.3174 38 1 5.1761 7.1796 -0.4242 39 1 5.5746 9.6017 -0.5767 40 1 5.1968 9.4097 -4.8261 41 1 4.8042 6.9857 -4.6893 42 1 4.5307 2.8300 -4.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167129594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:54 Heat of formation + Delta-G solvation = 17.070546 kcal Electronic energy + Delta-G solvation = -25845.212265 eV Core-core repulsion = 22125.176703 eV Total energy + Delta-G solvation = -3720.035561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96354 -41.81070 -39.88544 -38.57287 -35.92406 -34.78381 -33.87977 -32.65926 -31.98128 -30.76317 -29.56530 -26.94835 -25.50297 -24.92254 -23.62772 -23.34782 -22.19781 -21.86946 -20.13459 -18.75181 -18.32759 -17.82009 -17.25039 -16.97696 -16.64522 -16.40471 -16.24738 -15.95312 -15.63817 -15.47312 -15.11509 -14.92124 -14.66858 -14.51936 -14.49191 -14.14198 -13.80849 -13.61508 -13.37787 -13.15255 -13.05626 -13.00851 -12.45829 -12.20337 -12.14195 -12.05044 -11.91171 -11.66016 -11.50044 -11.41164 -11.05305 -10.64491 -10.17177 -9.98134 -9.44505 -8.91437 -8.63717 -6.22729 -0.50901 0.21230 0.48182 0.82087 1.13514 1.21901 1.27546 2.06728 2.37664 2.52302 2.78470 3.11066 3.18012 3.27922 3.57666 3.75636 3.86369 3.93587 4.06772 4.14683 4.23862 4.30269 4.31238 4.43710 4.49439 4.66092 4.72925 4.80053 4.83265 4.92350 4.97217 4.98525 5.00750 5.06651 5.11041 5.15654 5.30196 5.36981 5.44360 5.49740 5.53708 5.73350 5.82877 5.84873 6.32128 6.55814 7.05651 7.23702 7.65752 8.45189 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.004263 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.672165 B = 6567.213505 C = 7362.860808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.115 3.885 5 N -0.449 5.449 6 C -0.328 4.328 7 H 0.085 0.915 8 C 0.061 3.939 9 N -0.876 5.876 10 Si 0.897 3.103 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.394 3.606 15 C -0.289 4.289 16 C 0.212 3.788 17 C -0.074 4.074 18 C -0.078 4.078 19 C -0.155 4.155 20 C 0.103 3.897 21 F -0.138 7.138 22 C -0.149 4.149 23 C -0.047 4.047 24 N -0.588 5.588 25 C 0.326 3.674 26 N -0.610 5.610 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.283 0.717 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 0.680 -9.500 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.154 4.154 4 C -0.008 4.008 5 N -0.146 5.146 6 C -0.457 4.457 7 H 0.102 0.898 8 C -0.147 4.147 9 N -0.510 5.510 10 Si 0.723 3.277 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.202 1.202 14 C 0.150 3.850 15 C -0.319 4.319 16 C 0.074 3.926 17 C -0.075 4.075 18 C -0.098 4.098 19 C -0.174 4.174 20 C 0.083 3.917 21 F -0.116 7.116 22 C -0.168 4.168 23 C -0.066 4.066 24 N -0.311 5.311 25 C 0.036 3.964 26 N -0.338 5.338 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.172 0.828 40 H 0.188 0.812 41 H 0.174 0.826 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.864 0.237 -9.903 10.312 hybrid contribution 0.952 0.605 1.039 1.533 sum -1.912 0.842 -8.864 9.107 Atomic orbital electron populations 1.21733 0.94949 1.02267 1.01496 1.21417 0.96557 0.94637 1.02590 1.21787 0.94771 0.98212 1.00614 1.21711 0.94625 0.82285 1.02184 1.42578 1.59856 1.11315 1.00804 1.18787 1.04046 1.31153 0.91709 0.89770 1.25743 0.98637 0.94318 0.95979 1.69837 1.29140 1.18742 1.33323 0.86546 0.81538 0.79551 0.80063 1.19060 1.20543 1.20183 1.18938 0.90514 0.88431 0.87077 1.22167 1.14340 0.95342 1.00020 1.19871 0.90910 0.93349 0.88440 1.18708 1.03825 0.90046 0.94892 1.21204 0.96598 0.93730 0.98234 1.21174 1.03805 0.94499 0.97913 1.17918 1.01426 0.77533 0.94810 1.91496 1.92198 1.30767 1.97181 1.21366 1.02822 0.93836 0.98740 1.21282 0.94502 0.93615 0.97167 1.68295 1.24493 1.07897 1.30391 1.25117 0.87953 0.88017 0.95345 1.67922 1.26701 1.40800 0.98405 0.93162 0.93187 0.91084 0.91258 0.91293 0.93411 0.93806 0.90473 0.90983 0.90697 0.84984 0.86074 0.82802 0.81185 0.82634 0.75888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.91 71.98 0.71 -2.48 16 2 C -0.11 -2.86 5.93 30.60 0.18 -2.68 16 3 C -0.11 -3.84 5.54 30.60 0.17 -3.67 16 4 C 0.11 4.42 5.51 86.38 0.48 4.89 16 5 N -0.45 -20.91 2.16 -517.36 -1.12 -22.03 16 6 C -0.33 -16.92 9.21 84.05 0.77 -16.14 16 7 H 0.08 4.62 8.06 -2.91 -0.02 4.60 16 8 C 0.06 3.18 3.81 84.89 0.32 3.50 16 9 N -0.88 -46.78 13.96 21.65 0.30 -46.48 16 10 Si 0.90 43.56 24.98 68.60 1.71 45.27 16 11 H -0.27 -13.08 6.31 99.48 0.63 -12.45 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.28 -13.96 7.11 99.48 0.71 -13.25 16 14 C 0.39 18.19 5.36 133.08 0.71 18.90 16 15 C -0.29 -13.41 5.62 22.83 0.13 -13.28 16 16 C 0.21 8.77 6.64 41.84 0.28 9.05 16 17 C -0.07 -2.64 5.87 -20.04 -0.12 -2.76 16 18 C -0.08 -2.74 9.42 22.48 0.21 -2.53 16 19 C -0.16 -4.50 10.01 22.28 0.22 -4.27 16 20 C 0.10 2.71 7.30 22.43 0.16 2.87 16 21 F -0.14 -3.48 17.26 44.97 0.78 -2.70 16 22 C -0.15 -3.58 10.01 22.28 0.22 -3.35 16 23 C -0.05 -1.34 9.58 22.48 0.22 -1.13 16 24 N -0.59 -22.40 9.64 -189.31 -1.83 -24.23 16 25 C 0.33 11.76 12.27 180.93 2.22 13.98 16 26 N -0.61 -25.40 9.22 -197.74 -1.82 -27.23 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.90 7.26 -2.39 -0.02 2.89 16 35 H 0.07 2.69 8.04 -2.39 -0.02 2.68 16 36 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.13 6.62 4.39 -2.91 -0.01 6.60 16 38 H 0.12 4.75 6.40 -2.91 -0.02 4.73 16 39 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 40 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.16 4.07 7.62 -2.91 -0.02 4.04 16 42 H 0.23 5.77 8.06 -2.91 -0.02 5.75 16 Total: -1.00 -59.35 350.99 5.88 -53.48 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.95 Total: 23.02 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 6.90 Total: 0.90 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -4.46 Total: -119.96 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.78 Total: -2.70 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.71 Total: 45.27 kcal Total: -59.35 5.88 -53.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.547 kcal (2) G-P(sol) polarization free energy of solvation -59.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds