Wall clock time and date at job start Tue Mar 31 2020 11:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 N 1.46492 * 109.47363 * 59.99700 * 4 2 1 7 7 C 1.37939 * 120.00426 * 275.00738 * 6 4 2 8 8 N 1.32621 * 120.22846 * 359.71344 * 7 6 4 9 9 C 1.32249 * 120.08169 * 179.77758 * 8 7 6 10 10 C 1.38968 * 120.56550 * 0.50816 * 9 8 7 11 11 N 1.31718 * 120.48133 * 359.75195 * 10 9 8 12 12 C 1.33908 * 119.88958 * 359.97438 * 11 10 9 13 13 C 1.40819 * 120.27502 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00092 * 179.97438 * 13 12 11 15 15 C 1.40121 * 119.99993 * 359.97438 * 13 12 11 16 16 N 1.30734 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00052 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47046 * 60.00087 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47405 * 300.00217 * 17 15 13 21 21 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 22 22 C 1.38240 * 119.97552 * 279.72456 * 21 4 2 23 23 C 1.38203 * 120.02707 * 179.72375 * 22 21 4 24 24 C 1.38460 * 119.97030 * 0.52858 * 23 22 21 25 25 F 1.35100 * 120.02186 * 179.72286 * 24 23 22 26 26 C 1.38465 * 119.95121 * 359.74733 * 24 23 22 27 27 C 1.38194 * 119.97144 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 0.97005 * 120.00153 * 94.99794 * 6 4 2 36 36 H 1.07999 * 119.72014 * 180.24116 * 9 8 7 37 37 H 1.08006 * 119.75923 * 179.72435 * 10 9 8 38 38 H 0.97000 * 119.99681 * 180.02562 * 16 15 13 39 39 H 1.08007 * 119.98695 * 359.97438 * 22 21 4 40 40 H 1.07999 * 120.01066 * 180.29588 * 23 22 21 41 41 H 1.07996 * 120.01005 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.98562 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 7 1.5517 -2.1025 1.2493 7 6 0.3010 -2.3919 1.7540 8 7 -0.4610 -1.4241 2.2456 9 6 -1.6613 -1.7042 2.7248 10 6 -2.1332 -3.0113 2.7290 11 7 -1.3931 -3.9904 2.2509 12 6 -0.1769 -3.7272 1.7561 13 6 0.6210 -4.7677 1.2425 14 1 1.6010 -4.5503 0.8441 15 6 0.1434 -6.0850 1.2482 16 7 -1.0432 -6.3480 1.7299 17 14 1.2015 -7.4651 0.5662 18 1 2.4711 -7.5405 1.3328 19 1 0.4733 -8.7535 0.6877 20 1 1.5016 -7.1985 -0.8635 21 6 3.5470 -0.7219 1.2489 22 6 4.2372 -1.6432 0.4836 23 6 5.6192 -1.6410 0.4780 24 6 6.3125 -0.7226 1.2480 25 9 7.6635 -0.7231 1.2477 26 6 5.6202 0.1961 2.0187 27 6 4.2382 0.1957 2.0181 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.1078 -2.8136 0.8942 36 1 -2.2785 -0.9110 3.1201 37 1 -3.1138 -3.2260 3.1275 38 1 -1.3736 -7.2599 1.7342 39 1 3.6962 -2.3625 -0.1135 40 1 6.1582 -2.3578 -0.1237 41 1 6.1600 0.9127 2.6199 42 1 3.6979 0.9124 2.6188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170060576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:45 Heat of formation + Delta-G solvation = 27.542515 kcal Electronic energy + Delta-G solvation = -26243.683214 eV Core-core repulsion = 22524.101752 eV Total energy + Delta-G solvation = -3719.581462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -48.90454 -39.84492 -38.81141 -36.47182 -33.99608 -33.27540 -31.65969 -31.14291 -30.80298 -28.68850 -26.56185 -25.96676 -25.18779 -23.14858 -22.15577 -21.59089 -21.28020 -19.44867 -17.86795 -17.57331 -16.89428 -16.46144 -15.66624 -15.59631 -15.41318 -14.97356 -14.49366 -14.26469 -14.19751 -14.06506 -13.54968 -13.28025 -13.11715 -12.90634 -12.59367 -12.25215 -12.06464 -11.95903 -11.80486 -11.55721 -11.41840 -11.30703 -11.00547 -10.87411 -10.66502 -10.49555 -10.33948 -10.24905 -9.77599 -9.43830 -9.28584 -9.11358 -8.60567 -8.46295 -7.34765 -6.81518 -6.42426 -4.43812 1.13320 1.21970 2.65519 3.03266 3.03898 3.06463 3.23835 3.56885 3.86977 4.21648 4.26362 4.71544 4.72499 4.79387 4.86412 5.23667 5.32470 5.36012 5.37764 5.57108 5.80165 5.84994 5.90645 5.94594 5.99590 6.04768 6.09263 6.15044 6.18004 6.22517 6.29637 6.33463 6.40388 6.49889 6.57514 6.70117 6.83758 6.88694 6.98819 7.03545 7.10143 7.64991 7.94440 8.09592 8.35657 8.60813 8.85109 9.43482 9.99087 10.22811 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004903 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.696436 B = 5709.246687 C = 7499.797450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.098 4.098 3 C -0.145 4.145 4 C 0.209 3.791 5 H 0.090 0.910 6 N -0.718 5.718 7 C 0.263 3.737 8 N -0.489 5.489 9 C -0.086 4.086 10 C 0.030 3.970 11 N -0.448 5.448 12 C 0.195 3.805 13 C -0.424 4.424 14 H 0.080 0.920 15 C 0.070 3.930 16 N -0.713 5.713 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.083 4.083 22 C -0.084 4.084 23 C -0.150 4.150 24 C 0.086 3.914 25 F -0.145 7.145 26 C -0.153 4.153 27 C -0.082 4.082 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.401 0.599 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.275 0.725 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 9.058 -2.653 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 C -0.202 4.202 4 C 0.102 3.898 5 H 0.108 0.892 6 N -0.359 5.359 7 C 0.017 3.983 8 N -0.210 5.210 9 C -0.240 4.240 10 C -0.133 4.133 11 N -0.166 5.166 12 C 0.061 3.939 13 C -0.458 4.458 14 H 0.098 0.902 15 C -0.156 4.156 16 N -0.335 5.335 17 Si 0.728 3.272 18 H -0.189 1.189 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.084 4.084 22 C -0.102 4.102 23 C -0.168 4.168 24 C 0.067 3.933 25 F -0.124 7.124 26 C -0.172 4.172 27 C -0.100 4.100 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.239 0.761 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.908 9.054 -2.488 12.943 hybrid contribution 0.821 -0.906 -0.385 1.282 sum 9.729 8.148 -2.873 13.011 Atomic orbital electron populations 1.21822 0.93836 1.02824 1.00316 1.21533 0.97204 0.95229 0.97859 1.21845 1.00521 0.96386 1.01487 1.19565 0.86429 0.85213 0.98608 0.89220 1.43794 1.15744 1.06255 1.70078 1.19171 0.87880 0.91030 1.00210 1.67419 1.05943 1.34311 1.13354 1.22257 0.94606 0.96159 1.10985 1.23141 0.99688 0.90724 0.99782 1.69497 1.04085 1.30452 1.12576 1.19007 0.91200 0.89394 0.94283 1.19169 1.01336 0.90989 1.34296 0.90193 1.25985 0.95131 0.99965 0.94526 1.70082 1.14752 1.20775 1.27932 0.86433 0.80659 0.79813 0.80271 1.18903 1.20137 1.18899 1.20278 0.96560 0.95369 0.96172 1.20893 0.92902 0.98170 0.98267 1.21117 0.94947 0.99723 1.01045 1.17709 0.76626 0.98686 1.00259 1.91476 1.29330 1.96095 1.95500 1.21079 0.94923 1.00012 1.01158 1.20889 0.92814 0.98389 0.97911 0.95018 0.91598 0.91852 0.91965 0.92695 0.92972 0.93123 0.76109 0.86104 0.86033 0.91414 0.84862 0.84862 0.84977 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 7.66 37.16 0.28 -1.92 16 2 C -0.10 -1.44 2.68 -90.62 -0.24 -1.68 16 3 C -0.14 -1.75 8.79 37.15 0.33 -1.43 16 4 C 0.21 3.27 2.05 -69.08 -0.14 3.13 16 5 H 0.09 1.54 7.40 -51.93 -0.38 1.16 16 6 N -0.72 -13.52 4.94 -54.54 -0.27 -13.79 16 7 C 0.26 5.99 5.84 -154.82 -0.90 5.09 16 8 N -0.49 -10.87 6.59 -11.67 -0.08 -10.95 16 9 C -0.09 -1.90 11.22 -17.10 -0.19 -2.09 16 10 C 0.03 0.71 11.21 -17.33 -0.19 0.51 16 11 N -0.45 -12.02 8.03 -10.79 -0.09 -12.10 16 12 C 0.20 5.03 6.56 -84.61 -0.56 4.47 16 13 C -0.42 -10.47 8.89 -37.90 -0.34 -10.81 16 14 H 0.08 1.77 6.12 -52.48 -0.32 1.45 16 15 C 0.07 1.69 5.50 -17.31 -0.10 1.59 16 16 N -0.71 -18.38 11.48 55.56 0.64 -17.74 16 17 Si 0.90 17.72 29.56 -169.99 -5.03 12.69 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 21 C -0.08 -1.12 4.05 -104.62 -0.42 -1.54 16 22 C -0.08 -1.08 9.06 -39.59 -0.36 -1.44 16 23 C -0.15 -1.81 10.03 -39.51 -0.40 -2.20 16 24 C 0.09 1.07 7.30 -39.42 -0.29 0.78 16 25 F -0.15 -1.86 17.27 2.25 0.04 -1.82 16 26 C -0.15 -1.75 10.03 -39.51 -0.40 -2.14 16 27 C -0.08 -0.97 8.70 -39.59 -0.34 -1.32 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 1.16 7.33 -51.93 -0.38 0.78 16 30 H 0.06 1.29 5.75 -51.93 -0.30 0.99 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 6.64 -51.93 -0.34 0.25 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 7.27 4.83 -40.82 -0.20 7.07 16 36 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 38 H 0.27 6.46 8.29 -40.82 -0.34 6.12 16 39 H 0.13 1.65 6.89 -52.48 -0.36 1.29 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.38 8.04 -52.48 -0.42 0.96 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -27.98 344.85 -9.07 -37.05 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.23 Total: 12.46 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -4.26 Total: -11.01 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.20 Total: -54.58 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.98 -9.07 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170060576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.590 kcal (2) G-P(sol) polarization free energy of solvation -27.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds