Wall clock time and date at job start Tue Mar 31 2020 11:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 6 6 N 1.46492 * 109.47363 * 59.99700 * 4 2 1 7 7 C 1.37939 * 120.00426 * 275.00738 * 6 4 2 8 8 N 1.32621 * 120.22846 * 359.71344 * 7 6 4 9 9 C 1.32249 * 120.08169 * 179.77758 * 8 7 6 10 10 C 1.38968 * 120.56550 * 0.50816 * 9 8 7 11 11 N 1.31718 * 120.48133 * 359.75195 * 10 9 8 12 12 C 1.33908 * 119.88958 * 359.97438 * 11 10 9 13 13 C 1.40819 * 120.27502 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00092 * 179.97438 * 13 12 11 15 15 C 1.40121 * 119.99993 * 359.97438 * 13 12 11 16 16 N 1.30734 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00052 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47046 * 60.00087 * 17 15 13 19 19 H 1.48496 * 109.47302 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47405 * 300.00217 * 17 15 13 21 21 C 1.50703 * 109.47126 * 179.97438 * 4 2 1 22 22 C 1.38240 * 119.97552 * 279.72456 * 21 4 2 23 23 C 1.38203 * 120.02707 * 179.72375 * 22 21 4 24 24 C 1.38460 * 119.97030 * 0.52858 * 23 22 21 25 25 F 1.35100 * 120.02186 * 179.72286 * 24 23 22 26 26 C 1.38465 * 119.95121 * 359.74733 * 24 23 22 27 27 C 1.38194 * 119.97144 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 0.97005 * 120.00153 * 94.99794 * 6 4 2 36 36 H 1.07999 * 119.72014 * 180.24116 * 9 8 7 37 37 H 1.08006 * 119.75923 * 179.72435 * 10 9 8 38 38 H 0.97000 * 119.99681 * 180.02562 * 16 15 13 39 39 H 1.08007 * 119.98695 * 359.97438 * 22 21 4 40 40 H 1.07999 * 120.01066 * 180.29588 * 23 22 21 41 41 H 1.07996 * 120.01005 * 179.97438 * 26 24 23 42 42 H 1.08005 * 119.98562 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6767 -0.2075 2.1393 6 7 1.5517 -2.1025 1.2493 7 6 0.3010 -2.3919 1.7540 8 7 -0.4610 -1.4241 2.2456 9 6 -1.6613 -1.7042 2.7248 10 6 -2.1332 -3.0113 2.7290 11 7 -1.3931 -3.9904 2.2509 12 6 -0.1769 -3.7272 1.7561 13 6 0.6210 -4.7677 1.2425 14 1 1.6010 -4.5503 0.8441 15 6 0.1434 -6.0850 1.2482 16 7 -1.0432 -6.3480 1.7299 17 14 1.2015 -7.4651 0.5662 18 1 2.4711 -7.5405 1.3328 19 1 0.4733 -8.7535 0.6877 20 1 1.5016 -7.1985 -0.8635 21 6 3.5470 -0.7219 1.2489 22 6 4.2372 -1.6432 0.4836 23 6 5.6192 -1.6410 0.4780 24 6 6.3125 -0.7226 1.2480 25 9 7.6635 -0.7231 1.2477 26 6 5.6202 0.1961 2.0187 27 6 4.2382 0.1957 2.0181 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 2.1078 -2.8136 0.8942 36 1 -2.2785 -0.9110 3.1201 37 1 -3.1138 -3.2260 3.1275 38 1 -1.3736 -7.2599 1.7342 39 1 3.6962 -2.3625 -0.1135 40 1 6.1582 -2.3578 -0.1237 41 1 6.1600 0.9127 2.6199 42 1 3.6979 0.9124 2.6188 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170060576.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:44 Heat of formation + Delta-G solvation = 14.230845 kcal Electronic energy + Delta-G solvation = -26244.260451 eV Core-core repulsion = 22524.101752 eV Total energy + Delta-G solvation = -3720.158700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.86873 -41.20953 -40.26166 -37.75591 -35.79047 -34.75739 -33.38618 -32.10915 -32.06679 -30.25145 -27.83038 -27.68345 -26.50348 -24.15920 -23.86081 -23.03104 -22.61700 -20.69575 -19.47316 -18.87530 -18.27729 -17.86492 -16.94797 -16.82405 -16.56998 -16.37452 -15.89208 -15.79696 -15.72094 -15.23588 -14.59241 -14.53838 -14.42771 -14.25259 -13.84387 -13.81040 -13.42844 -13.21209 -13.08508 -12.95109 -12.86150 -12.67442 -12.35103 -12.15021 -11.96537 -11.89980 -11.85997 -11.59623 -11.43705 -11.13203 -11.02874 -10.31691 -10.03760 -9.52935 -9.16178 -8.53020 -8.21909 -6.27890 0.14444 0.29417 0.86994 1.33230 1.42742 1.53711 1.57608 2.23121 2.55244 2.79867 2.92239 3.29880 3.65173 3.79707 3.95867 3.98899 4.14923 4.18094 4.25111 4.35187 4.37195 4.40260 4.51362 4.59696 4.76688 4.85781 4.93320 4.98274 4.99694 5.03914 5.12683 5.16201 5.17812 5.19813 5.26152 5.27364 5.31147 5.48187 5.60610 5.66036 5.88120 5.92953 6.16133 6.36937 6.73818 6.82932 7.07157 7.67048 8.16598 8.46813 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.004903 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.696436 B = 5709.246687 C = 7499.797450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.093 4.093 3 C -0.136 4.136 4 C 0.213 3.787 5 H 0.076 0.924 6 N -0.711 5.711 7 C 0.269 3.731 8 N -0.491 5.491 9 C -0.078 4.078 10 C 0.002 3.998 11 N -0.486 5.486 12 C 0.159 3.841 13 C -0.449 4.449 14 H 0.096 0.904 15 C 0.024 3.976 16 N -0.758 5.758 17 Si 0.980 3.020 18 H -0.258 1.258 19 H -0.275 1.275 20 H -0.255 1.255 21 C -0.094 4.094 22 C -0.092 4.092 23 C -0.150 4.150 24 C 0.078 3.922 25 F -0.148 7.148 26 C -0.147 4.147 27 C -0.080 4.080 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.403 0.597 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.278 0.722 39 H 0.133 0.867 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.342 10.290 -3.159 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.113 4.113 3 C -0.194 4.194 4 C 0.107 3.893 5 H 0.094 0.906 6 N -0.351 5.351 7 C 0.023 3.977 8 N -0.213 5.213 9 C -0.232 4.232 10 C -0.160 4.160 11 N -0.205 5.205 12 C 0.024 3.976 13 C -0.483 4.483 14 H 0.114 0.886 15 C -0.197 4.197 16 N -0.381 5.381 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.199 1.199 20 H -0.179 1.179 21 C -0.095 4.095 22 C -0.110 4.110 23 C -0.169 4.169 24 C 0.059 3.941 25 F -0.127 7.127 26 C -0.166 4.166 27 C -0.098 4.098 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.241 0.759 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.077 10.333 -2.996 15.442 hybrid contribution 0.158 -1.150 -0.207 1.179 sum 11.236 9.183 -3.203 14.860 Atomic orbital electron populations 1.21698 0.95547 1.00173 1.00528 1.21474 0.95523 0.97103 0.97237 1.21762 1.01140 0.94198 1.02253 1.19609 0.88095 0.83105 0.98483 0.90591 1.43906 1.14322 1.07975 1.68859 1.19284 0.88986 0.90340 0.99133 1.67568 1.06055 1.33763 1.13881 1.22735 0.94723 0.96422 1.09327 1.23472 1.00499 0.91195 1.00821 1.69403 1.05135 1.32161 1.13781 1.19466 0.91603 0.91125 0.95399 1.19576 1.02136 0.91619 1.34998 0.88607 1.26914 0.96198 1.02291 0.94322 1.70210 1.16751 1.21462 1.29656 0.85282 0.78686 0.76204 0.79757 1.18176 1.19922 1.17948 1.20106 0.94997 0.96739 0.97633 1.20928 0.93377 0.98226 0.98490 1.21267 0.94609 0.99947 1.01030 1.17905 0.76609 0.99052 1.00553 1.91473 1.29530 1.96128 1.95531 1.21316 0.94682 0.99898 1.00668 1.21046 0.93157 0.98189 0.97456 0.93619 0.92504 0.95780 0.92015 0.92256 0.91862 0.92064 0.75882 0.83097 0.84439 0.91187 0.84891 0.83305 0.82619 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 7.66 71.98 0.55 -3.51 16 2 C -0.09 -2.61 2.68 -10.79 -0.03 -2.64 16 3 C -0.14 -2.94 8.79 71.98 0.63 -2.30 16 4 C 0.21 6.45 2.05 44.25 0.09 6.54 16 5 H 0.08 2.54 7.40 -2.39 -0.02 2.52 16 6 N -0.71 -26.75 4.94 -326.45 -1.61 -28.36 16 7 C 0.27 12.47 5.84 134.03 0.78 13.25 16 8 N -0.49 -21.92 6.59 -190.82 -1.26 -23.18 16 9 C -0.08 -3.47 11.22 84.81 0.95 -2.52 16 10 C 0.00 0.08 11.21 84.88 0.95 1.03 16 11 N -0.49 -27.03 8.03 -188.05 -1.51 -28.54 16 12 C 0.16 8.44 6.56 40.35 0.26 8.71 16 13 C -0.45 -22.67 8.89 23.36 0.21 -22.46 16 14 H 0.10 4.29 6.12 -2.91 -0.02 4.28 16 15 C 0.02 1.20 5.50 85.31 0.47 1.67 16 16 N -0.76 -40.33 11.48 21.86 0.25 -40.08 16 17 Si 0.98 36.50 29.56 68.60 2.03 38.53 16 18 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 19 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 21 C -0.09 -2.36 4.05 -19.86 -0.08 -2.44 16 22 C -0.09 -2.22 9.06 22.26 0.20 -2.01 16 23 C -0.15 -3.29 10.03 22.31 0.22 -3.07 16 24 C 0.08 1.73 7.30 22.38 0.16 1.90 16 25 F -0.15 -3.42 17.27 44.97 0.78 -2.64 16 26 C -0.15 -2.91 10.03 22.31 0.22 -2.69 16 27 C -0.08 -1.70 8.70 22.26 0.19 -1.51 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.96 7.33 -2.39 -0.02 1.95 16 30 H 0.02 0.97 5.75 -2.38 -0.01 0.96 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.25 6.64 -2.39 -0.02 1.23 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.40 14.61 4.83 -92.70 -0.45 14.16 16 36 H 0.15 5.65 8.06 -2.91 -0.02 5.62 16 37 H 0.14 5.97 8.06 -2.91 -0.02 5.94 16 38 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 39 H 0.13 3.15 6.89 -2.91 -0.02 3.13 16 40 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 42 H 0.15 2.64 8.04 -2.91 -0.02 2.62 16 Total: -1.00 -61.96 344.85 5.08 -56.88 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.61 Total: 39.44 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 5.80 Total: -12.05 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -4.13 Total: -120.16 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -61.96 5.08 -56.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170060576.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.113 kcal (2) G-P(sol) polarization free energy of solvation -61.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds