Wall clock time and date at job start Tue Mar 31 2020 11:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 C 1.53002 * 109.46937 * 120.00382 * 2 1 3 5 5 H 1.08997 * 109.46868 * 302.21430 * 4 2 1 6 6 N 1.46498 * 109.46776 * 182.21611 * 4 2 1 7 7 C 1.38802 * 119.99852 * 156.89441 * 6 4 2 8 8 C 1.40085 * 120.76063 * 174.73621 * 7 6 4 9 9 N 1.31655 * 119.14090 * 180.02562 * 8 7 6 10 10 C 1.33599 * 120.79045 * 0.02562 * 9 8 7 11 11 C 1.41154 * 119.17265 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00005 * 6.78100 * 11 10 9 13 13 C 1.40044 * 120.00183 * 186.78572 * 11 10 9 14 14 N 1.30736 * 119.99648 * 6.75655 * 13 11 10 15 15 Si 1.86794 * 120.00094 * 186.75849 * 13 11 10 16 16 H 1.48492 * 109.47231 * 94.99173 * 15 13 11 17 17 H 1.48507 * 109.46847 * 214.99217 * 15 13 11 18 18 H 1.48498 * 109.47114 * 334.98856 * 15 13 11 19 19 N 1.33601 * 121.66024 * 359.97438 * 10 9 8 20 20 C 1.31662 * 120.78918 * 0.02562 * 19 10 9 21 21 C 1.50695 * 109.47308 * 62.21604 * 4 2 1 22 22 C 1.38251 * 119.97841 * 79.72258 * 21 4 2 23 23 C 1.38190 * 120.02554 * 179.76641 * 22 21 4 24 24 C 1.38463 * 119.97869 * 0.51083 * 23 22 21 25 25 F 1.35099 * 120.02706 * 179.76491 * 24 23 22 26 26 C 1.38464 * 119.94291 * 359.74637 * 24 23 22 27 27 C 1.38196 * 119.97544 * 359.97438 * 26 24 23 28 28 H 1.09007 * 109.46941 * 300.00427 * 1 2 3 29 29 H 1.09009 * 109.47045 * 59.99756 * 1 2 3 30 30 H 1.08998 * 109.47901 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46941 * 239.99573 * 2 1 3 32 32 H 1.08999 * 109.46897 * 175.65521 * 3 2 1 33 33 H 1.09007 * 109.47318 * 295.65153 * 3 2 1 34 34 H 1.08992 * 109.47470 * 55.65503 * 3 2 1 35 35 H 0.97001 * 120.00333 * 336.88714 * 6 4 2 36 36 H 1.08000 * 120.42803 * 359.97438 * 8 7 6 37 37 H 0.97003 * 119.99474 * 179.97438 * 14 13 11 38 38 H 1.08002 * 120.43079 * 180.02562 * 20 19 10 39 39 H 1.08000 * 119.97811 * 0.02562 * 22 21 4 40 40 H 1.08001 * 120.01559 * 180.25670 * 23 22 21 41 41 H 1.08000 * 120.00901 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.98646 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6445 -0.2310 2.1387 6 7 3.5039 -0.6752 1.2762 7 6 4.1805 -0.8134 2.4802 8 6 5.5794 -0.8817 2.5123 9 7 6.1884 -1.0133 3.6720 10 6 5.4887 -1.0821 4.8080 11 6 6.1767 -1.2226 6.0325 12 1 7.2547 -1.1633 6.0560 13 6 5.4614 -1.4390 7.2169 14 7 4.1707 -1.6427 7.1730 15 14 6.3513 -1.4366 8.8592 16 1 6.2612 -0.0857 9.4690 17 1 5.7220 -2.4315 9.7646 18 1 7.7781 -1.7910 8.6496 19 7 4.1541 -1.0203 4.8144 20 6 3.4801 -0.8889 3.6911 21 6 1.5830 -2.1571 1.2220 22 6 2.2579 -3.0823 0.4475 23 6 1.8427 -4.4001 0.4256 24 6 0.7437 -4.7918 1.1714 25 9 0.3340 -6.0789 1.1469 26 6 0.0653 -3.8631 1.9425 27 6 0.4859 -2.5470 1.9674 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1273 1.4433 0.0779 33 1 1.7418 1.9333 -0.9264 34 1 1.6146 1.9783 0.8484 35 1 4.0005 -0.5483 0.4526 36 1 6.1507 -0.8279 1.5974 37 1 3.6753 -1.7929 7.9933 38 1 2.4013 -0.8391 3.7030 39 1 3.1126 -2.7757 -0.1372 40 1 2.3726 -5.1236 -0.1762 41 1 -0.7923 -4.1674 2.5242 42 1 -0.0429 -1.8226 2.5691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170068417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:48 Heat of formation + Delta-G solvation = 22.749120 kcal Electronic energy + Delta-G solvation = -25889.728375 eV Core-core repulsion = 22169.939055 eV Total energy + Delta-G solvation = -3719.789320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.80770 -39.83048 -38.71497 -36.79007 -34.10545 -33.01642 -31.71757 -31.06023 -30.72181 -28.87722 -27.04489 -26.12230 -24.58950 -23.08038 -22.76338 -21.82260 -21.07520 -19.80653 -17.80598 -17.62343 -16.51354 -16.44426 -15.93856 -15.51015 -15.49893 -15.20964 -14.57229 -14.28159 -14.24008 -14.00071 -13.49719 -13.37976 -13.03680 -12.93110 -12.70065 -12.58517 -12.24744 -12.12580 -11.92224 -11.80567 -11.24824 -11.18535 -11.07664 -11.00469 -10.93562 -10.65930 -10.52156 -10.17707 -9.85101 -9.36962 -9.17132 -9.00498 -8.93098 -8.41842 -7.23952 -6.80122 -6.44639 -4.35495 1.23560 1.33792 2.74929 2.93072 3.13654 3.18284 3.20860 3.64691 4.00229 4.12476 4.34879 4.68023 4.77800 4.81704 4.87360 4.95475 4.97797 5.26208 5.36779 5.43884 5.57236 5.58495 5.66716 5.79142 5.80407 5.86203 5.94591 5.97465 5.99916 6.05989 6.11860 6.19388 6.22981 6.29145 6.29359 6.36035 6.48090 6.63768 6.98244 7.10276 7.17708 7.38573 8.12079 8.29481 8.48775 8.58537 8.75989 9.22826 10.24797 10.40519 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.004084 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.939033 B = 6854.006887 C = 8081.549659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.207 3.793 5 H 0.081 0.919 6 N -0.740 5.740 7 C -0.038 4.038 8 C 0.104 3.896 9 N -0.568 5.568 10 C 0.373 3.627 11 C -0.416 4.416 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.728 5.728 15 Si 0.913 3.087 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.261 1.261 19 N -0.479 5.479 20 C 0.107 3.893 21 C -0.094 4.094 22 C -0.068 4.068 23 C -0.156 4.156 24 C 0.087 3.913 25 F -0.146 7.146 26 C -0.153 4.153 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.385 0.615 36 H 0.124 0.876 37 H 0.272 0.728 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 0.706 -12.999 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.201 4.201 4 C 0.099 3.901 5 H 0.099 0.901 6 N -0.376 5.376 7 C -0.143 4.143 8 C -0.070 4.070 9 N -0.287 5.287 10 C 0.132 3.868 11 C -0.453 4.453 12 H 0.106 0.894 13 C -0.153 4.153 14 N -0.352 5.352 15 Si 0.737 3.263 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.185 1.185 19 N -0.195 5.195 20 C -0.070 4.070 21 C -0.097 4.097 22 C -0.086 4.086 23 C -0.175 4.175 24 C 0.068 3.932 25 F -0.125 7.125 26 C -0.172 4.172 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.142 0.858 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.440 0.497 -11.819 15.134 hybrid contribution -0.116 -0.323 -0.423 0.545 sum -9.556 0.174 -12.242 15.531 Atomic orbital electron populations 1.21837 0.94611 1.02145 1.01851 1.21301 0.96158 0.96494 0.97437 1.21802 1.01923 0.95121 1.01297 1.19568 0.82602 0.89659 0.98260 0.90124 1.43538 1.02536 1.85424 1.06109 1.19103 0.93464 1.14070 0.87621 1.22170 0.89325 0.99259 0.96270 1.68558 1.40532 1.21358 0.98235 1.19777 0.85374 0.90803 0.90817 1.19084 0.94657 1.42769 0.88804 0.89363 1.25970 0.94814 0.93500 1.01031 1.70087 1.07273 1.28919 1.28908 0.86225 0.80563 0.78704 0.80773 1.19507 1.20244 1.18475 1.69202 1.09026 1.15564 1.25706 1.22621 0.98738 0.98168 0.87501 1.20664 0.94992 0.97698 0.96308 1.20730 0.98525 0.91518 0.97869 1.21096 0.97090 0.97613 1.01703 1.17705 0.96482 0.78634 1.00346 1.91469 1.89993 1.35572 1.95446 1.21068 1.01758 0.93450 1.00903 1.20890 0.96229 0.95077 0.97990 0.92410 0.92636 0.92245 0.91019 0.91900 0.93062 0.92602 0.78117 0.85813 0.91687 0.85981 0.85439 0.85269 0.85073 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.84 37.16 0.33 -0.97 16 2 C -0.09 -0.94 2.52 -90.62 -0.23 -1.17 16 3 C -0.14 -1.42 9.08 37.16 0.34 -1.08 16 4 C 0.21 2.63 1.53 -69.08 -0.11 2.52 16 5 H 0.08 1.13 6.29 -51.93 -0.33 0.81 16 6 N -0.74 -10.90 3.73 -52.89 -0.20 -11.10 16 7 C -0.04 -0.77 6.67 -83.32 -0.56 -1.33 16 8 C 0.10 2.29 11.20 -16.94 -0.19 2.10 16 9 N -0.57 -14.99 10.34 -12.49 -0.13 -15.12 16 10 C 0.37 10.62 7.33 -158.22 -1.16 9.46 16 11 C -0.42 -11.69 9.35 -37.80 -0.35 -12.04 16 12 H 0.09 2.40 7.86 -52.49 -0.41 1.99 16 13 C 0.07 1.87 5.47 -17.34 -0.09 1.78 16 14 N -0.73 -19.66 11.50 55.55 0.64 -19.02 16 15 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 16 16 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 18 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 19 N -0.48 -13.16 7.93 -12.48 -0.10 -13.26 16 20 C 0.11 2.47 10.49 -16.93 -0.18 2.29 16 21 C -0.09 -1.24 4.07 -104.62 -0.43 -1.67 16 22 C -0.07 -0.90 9.32 -39.59 -0.37 -1.27 16 23 C -0.16 -2.07 10.03 -39.52 -0.40 -2.47 16 24 C 0.09 1.22 7.30 -39.42 -0.29 0.93 16 25 F -0.15 -2.10 17.27 2.25 0.04 -2.06 16 26 C -0.15 -1.99 10.03 -39.51 -0.40 -2.39 16 27 C -0.08 -1.07 8.72 -39.59 -0.35 -1.41 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.06 0.55 6.69 -51.93 -0.35 0.20 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.39 4.91 8.19 -40.82 -0.33 4.58 16 36 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 38 H 0.12 2.56 6.31 -52.49 -0.33 2.23 16 39 H 0.13 1.54 7.72 -52.49 -0.41 1.13 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -30.85 354.99 -9.31 -40.15 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.47 Total: 7.64 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -4.42 Total: -6.71 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.21 Total: -58.50 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.85 -9.31 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170068417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.903 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds