Wall clock time and date at job start Tue Mar 31 2020 11:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47496 * 2 1 4 4 C 1.53002 * 109.46937 * 120.00382 * 2 1 3 5 5 H 1.08997 * 109.46868 * 302.21430 * 4 2 1 6 6 N 1.46498 * 109.46776 * 182.21611 * 4 2 1 7 7 C 1.38802 * 119.99852 * 156.89441 * 6 4 2 8 8 C 1.40085 * 120.76063 * 174.73621 * 7 6 4 9 9 N 1.31655 * 119.14090 * 180.02562 * 8 7 6 10 10 C 1.33599 * 120.79045 * 0.02562 * 9 8 7 11 11 C 1.41154 * 119.17265 * 180.02562 * 10 9 8 12 12 H 1.07991 * 120.00005 * 6.78100 * 11 10 9 13 13 C 1.40044 * 120.00183 * 186.78572 * 11 10 9 14 14 N 1.30736 * 119.99648 * 6.75655 * 13 11 10 15 15 Si 1.86794 * 120.00094 * 186.75849 * 13 11 10 16 16 H 1.48492 * 109.47231 * 94.99173 * 15 13 11 17 17 H 1.48507 * 109.46847 * 214.99217 * 15 13 11 18 18 H 1.48498 * 109.47114 * 334.98856 * 15 13 11 19 19 N 1.33601 * 121.66024 * 359.97438 * 10 9 8 20 20 C 1.31662 * 120.78918 * 0.02562 * 19 10 9 21 21 C 1.50695 * 109.47308 * 62.21604 * 4 2 1 22 22 C 1.38251 * 119.97841 * 79.72258 * 21 4 2 23 23 C 1.38190 * 120.02554 * 179.76641 * 22 21 4 24 24 C 1.38463 * 119.97869 * 0.51083 * 23 22 21 25 25 F 1.35099 * 120.02706 * 179.76491 * 24 23 22 26 26 C 1.38464 * 119.94291 * 359.74637 * 24 23 22 27 27 C 1.38196 * 119.97544 * 359.97438 * 26 24 23 28 28 H 1.09007 * 109.46941 * 300.00427 * 1 2 3 29 29 H 1.09009 * 109.47045 * 59.99756 * 1 2 3 30 30 H 1.08998 * 109.47901 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46941 * 239.99573 * 2 1 3 32 32 H 1.08999 * 109.46897 * 175.65521 * 3 2 1 33 33 H 1.09007 * 109.47318 * 295.65153 * 3 2 1 34 34 H 1.08992 * 109.47470 * 55.65503 * 3 2 1 35 35 H 0.97001 * 120.00333 * 336.88714 * 6 4 2 36 36 H 1.08000 * 120.42803 * 359.97438 * 8 7 6 37 37 H 0.97003 * 119.99474 * 179.97438 * 14 13 11 38 38 H 1.08002 * 120.43079 * 180.02562 * 20 19 10 39 39 H 1.08000 * 119.97811 * 0.02562 * 22 21 4 40 40 H 1.08001 * 120.01559 * 180.25670 * 23 22 21 41 41 H 1.08000 * 120.00901 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.98646 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6445 -0.2310 2.1387 6 7 3.5039 -0.6752 1.2762 7 6 4.1805 -0.8134 2.4802 8 6 5.5794 -0.8817 2.5123 9 7 6.1884 -1.0133 3.6720 10 6 5.4887 -1.0821 4.8080 11 6 6.1767 -1.2226 6.0325 12 1 7.2547 -1.1633 6.0560 13 6 5.4614 -1.4390 7.2169 14 7 4.1707 -1.6427 7.1730 15 14 6.3513 -1.4366 8.8592 16 1 6.2612 -0.0857 9.4690 17 1 5.7220 -2.4315 9.7646 18 1 7.7781 -1.7910 8.6496 19 7 4.1541 -1.0203 4.8144 20 6 3.4801 -0.8889 3.6911 21 6 1.5830 -2.1571 1.2220 22 6 2.2579 -3.0823 0.4475 23 6 1.8427 -4.4001 0.4256 24 6 0.7437 -4.7918 1.1714 25 9 0.3340 -6.0789 1.1469 26 6 0.0653 -3.8631 1.9425 27 6 0.4859 -2.5470 1.9674 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1273 1.4433 0.0779 33 1 1.7418 1.9333 -0.9264 34 1 1.6146 1.9783 0.8484 35 1 4.0005 -0.5483 0.4526 36 1 6.1507 -0.8279 1.5974 37 1 3.6753 -1.7929 7.9933 38 1 2.4013 -0.8391 3.7030 39 1 3.1126 -2.7757 -0.1372 40 1 2.3726 -5.1236 -0.1762 41 1 -0.7923 -4.1674 2.5242 42 1 -0.0429 -1.8226 2.5691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170068417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:47 Heat of formation + Delta-G solvation = 6.185196 kcal Electronic energy + Delta-G solvation = -25890.446640 eV Core-core repulsion = 22169.939055 eV Total energy + Delta-G solvation = -3720.507585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.90243 -41.16054 -40.28592 -37.91149 -35.71966 -34.56792 -33.62686 -32.08593 -31.86876 -30.53227 -27.97581 -27.53395 -26.06569 -24.66564 -23.98696 -23.17651 -22.45832 -20.85606 -19.69159 -18.70096 -18.09617 -17.63610 -17.12191 -17.02048 -16.72814 -16.60219 -16.09957 -15.80038 -15.30171 -15.06122 -14.81963 -14.51320 -14.43746 -14.33328 -14.00471 -13.81393 -13.30096 -13.17072 -13.07472 -12.97175 -12.87957 -12.77377 -12.53471 -12.05408 -11.94908 -11.89330 -11.84797 -11.50428 -11.40141 -11.19490 -11.10189 -10.72540 -10.02195 -9.49143 -9.16430 -8.48009 -8.32903 -6.28856 0.17291 0.31416 0.92194 1.07919 1.42944 1.54308 1.58078 2.27733 2.57333 2.85668 2.87605 3.30834 3.71923 3.80330 3.92135 4.00154 4.03505 4.05458 4.11211 4.18009 4.37357 4.38345 4.39516 4.47361 4.67968 4.72723 4.82975 4.88974 4.97532 5.02299 5.07559 5.13792 5.17413 5.21247 5.27184 5.31130 5.36855 5.45917 5.50103 5.52924 5.69931 5.95428 6.27242 6.56207 6.63550 6.82902 7.12872 7.38019 8.34147 8.52886 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.004084 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.939033 B = 6854.006887 C = 8081.549659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.143 4.143 4 C 0.207 3.793 5 H 0.070 0.930 6 N -0.722 5.722 7 C 0.005 3.995 8 C 0.084 3.916 9 N -0.590 5.590 10 C 0.342 3.658 11 C -0.463 4.463 12 H 0.079 0.921 13 C 0.031 3.969 14 N -0.768 5.768 15 Si 0.990 3.010 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.259 1.259 19 N -0.509 5.509 20 C 0.081 3.919 21 C -0.101 4.101 22 C -0.076 4.076 23 C -0.162 4.162 24 C 0.069 3.931 25 F -0.152 7.152 26 C -0.158 4.158 27 C -0.090 4.090 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.401 0.599 36 H 0.163 0.837 37 H 0.278 0.722 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.307 1.201 -14.511 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.200 4.200 4 C 0.100 3.900 5 H 0.088 0.912 6 N -0.358 5.358 7 C -0.101 4.101 8 C -0.089 4.089 9 N -0.309 5.309 10 C 0.098 3.902 11 C -0.500 4.500 12 H 0.097 0.903 13 C -0.190 4.190 14 N -0.393 5.393 15 Si 0.811 3.189 16 H -0.187 1.187 17 H -0.190 1.190 18 H -0.183 1.183 19 N -0.226 5.226 20 C -0.094 4.094 21 C -0.103 4.103 22 C -0.094 4.094 23 C -0.180 4.180 24 C 0.050 3.950 25 F -0.131 7.131 26 C -0.176 4.176 27 C -0.108 4.108 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.238 0.762 36 H 0.180 0.820 37 H 0.089 0.911 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.168 1.003 -13.432 16.877 hybrid contribution -0.034 -0.450 -0.268 0.524 sum -10.202 0.553 -13.700 17.090 Atomic orbital electron populations 1.21819 0.93545 1.02185 1.02661 1.21248 0.96909 0.96164 0.96064 1.21795 1.01204 0.95039 1.01981 1.19722 0.80805 0.89916 0.99561 0.91219 1.43572 1.03719 1.83645 1.04828 1.19047 0.93077 1.09276 0.88676 1.22806 0.90525 0.99158 0.96397 1.68531 1.41432 1.21866 0.99120 1.20039 0.86078 0.92401 0.91656 1.19315 0.94540 1.45861 0.90319 0.90256 1.26820 0.95534 0.92397 1.04273 1.70161 1.08746 1.30181 1.30191 0.85083 0.79087 0.79090 0.75686 1.18733 1.19015 1.18298 1.69105 1.09004 1.16620 1.27897 1.22967 0.99612 0.99073 0.87789 1.20708 0.95335 0.97660 0.96574 1.20914 0.98936 0.91491 0.98105 1.21319 0.96937 0.98119 1.01649 1.17964 0.97213 0.78652 1.01181 1.91452 1.90111 1.35956 1.95553 1.21303 1.02154 0.93443 1.00731 1.21109 0.96364 0.95363 0.97963 0.92416 0.91098 0.92583 0.89795 0.92805 0.91198 0.93438 0.76241 0.82009 0.91107 0.84280 0.84206 0.83834 0.83602 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.84 71.98 0.64 -1.49 16 2 C -0.08 -1.41 2.52 -10.80 -0.03 -1.44 16 3 C -0.14 -2.39 9.08 71.98 0.65 -1.74 16 4 C 0.21 4.76 1.53 44.24 0.07 4.82 16 5 H 0.07 1.83 6.29 -2.39 -0.02 1.81 16 6 N -0.72 -19.40 3.73 -321.25 -1.20 -20.60 16 7 C 0.01 0.21 6.67 38.94 0.26 0.47 16 8 C 0.08 3.63 11.20 85.17 0.95 4.59 16 9 N -0.59 -31.61 10.34 -193.42 -2.00 -33.61 16 10 C 0.34 20.09 7.33 134.95 0.99 21.08 16 11 C -0.46 -27.07 9.35 23.42 0.22 -26.85 16 12 H 0.08 4.54 7.86 -2.92 -0.02 4.52 16 13 C 0.03 1.64 5.47 85.29 0.47 2.11 16 14 N -0.77 -42.68 11.50 21.84 0.25 -42.43 16 15 Si 0.99 40.20 29.56 68.60 2.03 42.23 16 16 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 17 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 N -0.51 -28.74 7.93 -193.41 -1.53 -30.27 16 20 C 0.08 3.75 10.49 85.17 0.89 4.64 16 21 C -0.10 -2.45 4.07 -19.86 -0.08 -2.53 16 22 C -0.08 -1.84 9.32 22.26 0.21 -1.63 16 23 C -0.16 -4.03 10.03 22.31 0.22 -3.81 16 24 C 0.07 1.85 7.30 22.38 0.16 2.02 16 25 F -0.15 -4.26 17.27 44.97 0.78 -3.48 16 26 C -0.16 -3.91 10.03 22.31 0.22 -3.69 16 27 C -0.09 -2.15 8.72 22.26 0.19 -1.96 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.88 6.69 -2.39 -0.02 0.87 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.05 1.00 7.13 -2.39 -0.02 0.98 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.40 8.79 8.19 -92.71 -0.76 8.03 16 36 H 0.16 5.55 8.06 -2.91 -0.02 5.53 16 37 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 38 H 0.14 5.78 6.31 -2.91 -0.02 5.76 16 39 H 0.14 2.95 7.72 -2.91 -0.02 2.93 16 40 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.14 2.97 8.04 -2.91 -0.02 2.95 16 Total: -1.00 -69.48 354.99 4.66 -64.82 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.29 Total: 28.76 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 6.04 Total: -5.42 kcal Atomic # 7 Polarization: -122.43 SS G_CDS: -4.48 Total: -126.91 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -69.48 4.66 -64.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170068417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.010 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds