Wall clock time and date at job start Tue Mar 31 2020 11:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46898 * 239.99884 * 2 1 3 5 5 H 1.08010 * 120.00154 * 240.00203 * 4 2 1 6 6 C 1.37880 * 120.00286 * 60.00141 * 4 2 1 7 7 N 1.31515 * 119.99470 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46914 * 60.00407 * 8 6 4 10 10 H 1.48507 * 109.46932 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47403 * 300.00107 * 8 6 4 12 12 C 1.53000 * 109.46802 * 119.99948 * 2 1 3 13 13 N 1.46901 * 109.47362 * 299.99590 * 12 2 1 14 14 C 1.46898 * 110.99927 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.47021 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.85733 * 269.98373 * 15 14 13 17 17 C 1.37961 * 120.14913 * 180.02562 * 16 15 14 18 18 C 1.39575 * 119.84743 * 359.97438 * 17 16 15 19 19 C 1.47836 * 120.14006 * 179.97438 * 18 17 16 20 20 C 1.34784 * 125.27068 * 179.72498 * 19 18 17 21 21 C 1.37963 * 114.71006 * 179.79282 * 20 19 18 22 22 C 1.33619 * 115.05989 * 0.49669 * 21 20 19 23 23 S 1.75863 * 109.75840 * 359.73155 * 22 21 20 24 24 C 1.39569 * 119.71570 * 0.02562 * 18 17 16 25 25 C 1.37965 * 119.85208 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.46665 * 300.00566 * 1 2 3 27 27 H 1.08996 * 109.46637 * 59.99802 * 1 2 3 28 28 H 1.08992 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47203 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47543 * 299.99644 * 3 2 1 31 31 H 1.08999 * 109.47829 * 60.00147 * 3 2 1 32 32 H 0.97004 * 119.99323 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46683 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47025 * 59.99988 * 12 2 1 35 35 H 1.00901 * 110.99496 * 56.05229 * 13 12 2 36 36 H 1.08997 * 109.46853 * 60.00418 * 14 13 12 37 37 H 1.08997 * 109.47113 * 300.00288 * 14 13 12 38 38 H 1.08000 * 119.92359 * 0.03854 * 16 15 14 39 39 H 1.07993 * 120.07603 * 180.27506 * 17 16 15 40 40 H 1.08008 * 122.64848 * 359.97253 * 20 19 18 41 41 H 1.07994 * 122.47337 * 180.23239 * 21 20 19 42 42 H 1.07995 * 125.12365 * 179.75508 * 22 21 20 43 43 H 1.07993 * 120.07098 * 179.97438 * 24 18 17 44 44 H 1.08002 * 119.92386 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5504 -0.0287 2.4487 14 6 2.0209 -0.6952 3.6703 15 6 1.4993 0.0414 4.8771 16 6 2.2409 1.0706 5.4295 17 6 1.7694 1.7487 6.5346 18 6 0.5411 1.3946 7.0950 19 6 0.0300 2.1165 8.2796 20 6 -1.1404 1.8653 8.8990 21 6 -1.4001 2.6696 9.9894 22 6 -0.4594 3.5796 10.2584 23 16 0.8517 3.4412 9.0944 24 6 -0.2020 0.3555 6.5330 25 6 0.2815 -0.3152 5.4285 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 0.7096 1.1618 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.5439 0.0413 2.4402 36 1 3.1107 -0.6955 3.6873 37 1 1.6570 -1.7225 3.6868 38 1 3.1909 1.3439 4.9945 39 1 2.3471 2.5547 6.9622 40 1 -1.8200 1.0932 8.5696 41 1 -2.2996 2.5739 10.5794 42 1 -0.4980 4.2924 11.0687 43 1 -1.1529 0.0765 6.9622 44 1 -0.2928 -1.1192 4.9923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178921738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:27 Heat of formation + Delta-G solvation = 48.944157 kcal Electronic energy + Delta-G solvation = -22589.028709 eV Core-core repulsion = 19404.295716 eV Total energy + Delta-G solvation = -3184.732993 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59046 -37.84897 -36.81115 -34.33749 -32.24688 -31.05781 -30.67223 -28.51995 -25.77511 -25.54828 -25.17697 -24.03814 -22.93902 -22.74977 -21.06430 -19.19474 -18.45447 -18.05688 -16.29242 -15.96204 -15.60741 -15.21288 -14.91205 -14.72044 -14.33373 -14.06599 -13.64205 -13.59603 -13.35230 -12.90081 -12.66993 -12.53172 -12.43391 -12.21920 -12.08322 -11.80751 -11.42404 -11.12831 -11.04415 -10.96431 -10.79300 -10.63885 -10.57329 -10.16783 -10.05950 -9.74554 -9.37523 -9.07991 -8.99218 -8.76270 -8.62584 -8.28152 -8.06039 -7.70055 -5.90176 -4.00725 0.28879 1.33058 1.38291 1.56432 1.73214 2.57562 3.33148 3.38063 3.40496 3.78088 4.41167 4.44918 4.72308 4.82205 4.84813 4.89912 5.13070 5.15196 5.25180 5.35080 5.40991 5.41582 5.65895 5.69832 5.81950 5.91999 6.01307 6.06178 6.14444 6.30763 6.37001 6.39214 6.44586 6.66864 6.72272 6.89078 6.91384 7.08471 7.17518 7.39656 7.47505 7.71363 7.76803 7.83691 7.95493 8.21932 8.35581 8.56504 9.00468 9.64090 11.10276 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033259 B = 0.002145 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.662870 B =13053.120461 C =13110.054163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.074 3.926 13 N -0.680 5.680 14 C 0.092 3.908 15 C -0.063 4.063 16 C -0.092 4.092 17 C -0.111 4.111 18 C -0.031 4.031 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.224 4.224 23 S 0.115 5.885 24 C -0.099 4.099 25 C -0.111 4.111 26 H 0.011 0.989 27 H 0.083 0.917 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.258 0.742 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.339 0.661 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.129 0.871 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.123 0.877 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.727 2.647 24.577 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.054 4.054 13 N -0.312 5.312 14 C -0.037 4.037 15 C -0.064 4.064 16 C -0.110 4.110 17 C -0.129 4.129 18 C -0.033 4.033 19 C -0.245 4.245 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.359 4.359 23 S 0.381 5.619 24 C -0.119 4.119 25 C -0.130 4.130 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.158 0.842 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.141 0.859 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.927 4.031 24.241 24.591 hybrid contribution -1.615 -1.976 -0.583 2.618 sum -2.542 2.054 23.658 23.882 Atomic orbital electron populations 1.21839 0.98540 0.98341 1.00325 1.18088 0.92103 0.93080 0.89885 1.21640 0.97761 0.98187 1.00113 1.21064 1.31214 1.11817 0.90470 0.93060 1.24893 0.95073 0.94963 0.98694 1.69829 1.36785 1.22692 1.23012 0.86715 0.79182 0.79729 0.82641 1.20488 1.21374 1.20407 1.22192 0.99014 0.94423 0.89738 1.60678 1.16548 1.53426 1.00573 1.20937 1.00358 0.94250 0.88178 1.20063 0.94327 0.96029 0.95940 1.20960 1.00325 0.94855 0.94877 1.21156 0.95109 0.99885 0.96793 1.17987 0.95148 0.96509 0.93678 1.23073 0.99036 1.01582 1.00780 1.20335 0.97125 1.02520 0.97016 1.20068 1.00655 0.96615 0.98680 1.25722 0.98936 1.05994 1.05266 1.84214 1.22739 1.31344 1.23587 1.21067 0.99352 0.95249 0.96255 1.21009 0.95757 1.00212 0.96022 0.97052 0.89802 0.96229 0.96315 0.90745 0.96094 0.93134 0.92457 0.96804 0.84209 0.90510 0.94968 0.85353 0.86259 0.84099 0.84228 0.81876 0.85894 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 3 C -0.12 -2.92 8.09 37.15 0.30 -2.62 16 4 C -0.51 -13.61 8.01 -34.44 -0.28 -13.89 16 5 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 6 C 0.06 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.54 9.35 55.43 0.52 -24.02 16 8 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.07 1.54 4.59 -3.82 -0.02 1.52 16 13 N -0.68 -12.04 5.70 -115.06 -0.66 -12.70 16 14 C 0.09 1.33 5.80 -4.98 -0.03 1.30 16 15 C -0.06 -0.83 5.40 -104.53 -0.56 -1.39 16 16 C -0.09 -1.17 9.68 -39.64 -0.38 -1.55 16 17 C -0.11 -1.33 9.60 -39.18 -0.38 -1.70 16 18 C -0.03 -0.37 5.87 -104.98 -0.62 -0.99 16 19 C -0.13 -1.38 6.37 -36.88 -0.24 -1.61 16 20 C -0.14 -1.33 9.65 -40.91 -0.39 -1.72 16 21 C -0.13 -1.07 10.16 -41.30 -0.42 -1.49 16 22 C -0.22 -1.80 11.22 29.11 0.33 -1.47 16 23 S 0.12 1.08 22.26 -107.50 -2.39 -1.32 16 24 C -0.10 -1.12 9.54 -39.19 -0.37 -1.50 16 25 C -0.11 -1.34 9.68 -39.64 -0.38 -1.73 16 26 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 31 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.34 6.03 6.76 -39.29 -0.27 5.76 16 36 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.12 1.25 7.28 -52.49 -0.38 0.87 16 40 H 0.14 1.12 6.89 -52.48 -0.36 0.76 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.12 6.76 -52.49 -0.35 0.77 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -28.27 366.52 -11.85 -40.12 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.49 Total: 4.74 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: -3.33 Total: -28.44 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.14 Total: -36.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.39 Total: -1.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.27 -11.85 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178921738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.065 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds