Wall clock time and date at job start Tue Mar 31 2020 11:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47089 * 2 1 4 4 C 1.50693 * 109.46898 * 239.99884 * 2 1 3 5 5 H 1.08010 * 120.00154 * 240.00203 * 4 2 1 6 6 C 1.37880 * 120.00286 * 60.00141 * 4 2 1 7 7 N 1.31515 * 119.99470 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46914 * 60.00407 * 8 6 4 10 10 H 1.48507 * 109.46932 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47403 * 300.00107 * 8 6 4 12 12 C 1.53000 * 109.46802 * 119.99948 * 2 1 3 13 13 N 1.46901 * 109.47362 * 299.99590 * 12 2 1 14 14 C 1.46898 * 110.99927 * 179.97438 * 13 12 2 15 15 C 1.50701 * 109.47021 * 180.02562 * 14 13 12 16 16 C 1.38355 * 119.85733 * 269.98373 * 15 14 13 17 17 C 1.37961 * 120.14913 * 180.02562 * 16 15 14 18 18 C 1.39575 * 119.84743 * 359.97438 * 17 16 15 19 19 C 1.47836 * 120.14006 * 179.97438 * 18 17 16 20 20 C 1.34784 * 125.27068 * 179.72498 * 19 18 17 21 21 C 1.37963 * 114.71006 * 179.79282 * 20 19 18 22 22 C 1.33619 * 115.05989 * 0.49669 * 21 20 19 23 23 S 1.75863 * 109.75840 * 359.73155 * 22 21 20 24 24 C 1.39569 * 119.71570 * 0.02562 * 18 17 16 25 25 C 1.37965 * 119.85208 * 0.02562 * 24 18 17 26 26 H 1.08999 * 109.46665 * 300.00566 * 1 2 3 27 27 H 1.08996 * 109.46637 * 59.99802 * 1 2 3 28 28 H 1.08992 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47203 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47543 * 299.99644 * 3 2 1 31 31 H 1.08999 * 109.47829 * 60.00147 * 3 2 1 32 32 H 0.97004 * 119.99323 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46683 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.47025 * 59.99988 * 12 2 1 35 35 H 1.00901 * 110.99496 * 56.05229 * 13 12 2 36 36 H 1.08997 * 109.46853 * 60.00418 * 14 13 12 37 37 H 1.08997 * 109.47113 * 300.00288 * 14 13 12 38 38 H 1.08000 * 119.92359 * 0.03854 * 16 15 14 39 39 H 1.07993 * 120.07603 * 180.27506 * 17 16 15 40 40 H 1.08008 * 122.64848 * 359.97253 * 20 19 18 41 41 H 1.07994 * 122.47337 * 180.23239 * 21 20 19 42 42 H 1.07995 * 125.12365 * 179.75508 * 22 21 20 43 43 H 1.07993 * 120.07098 * 179.97438 * 24 18 17 44 44 H 1.08002 * 119.92386 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4193 -5.2205 11 1 3.8075 -1.1192 -4.0077 12 6 2.0400 -0.7213 1.2493 13 7 1.5504 -0.0287 2.4487 14 6 2.0209 -0.6952 3.6703 15 6 1.4993 0.0414 4.8771 16 6 2.2409 1.0706 5.4295 17 6 1.7694 1.7487 6.5346 18 6 0.5411 1.3946 7.0950 19 6 0.0300 2.1165 8.2796 20 6 -1.1404 1.8653 8.8990 21 6 -1.4001 2.6696 9.9894 22 6 -0.4594 3.5796 10.2584 23 16 0.8517 3.4412 9.0944 24 6 -0.2020 0.3555 6.5330 25 6 0.2815 -0.3152 5.4285 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9564 0.8900 32 1 0.7096 1.1618 -3.4844 33 1 3.1300 -0.7216 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 0.5439 0.0413 2.4402 36 1 3.1107 -0.6955 3.6873 37 1 1.6570 -1.7225 3.6868 38 1 3.1909 1.3439 4.9945 39 1 2.3471 2.5547 6.9622 40 1 -1.8200 1.0932 8.5696 41 1 -2.2996 2.5739 10.5794 42 1 -0.4980 4.2924 11.0687 43 1 -1.1529 0.0765 6.9622 44 1 -0.2928 -1.1192 4.9923 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178921738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:26 Heat of formation + Delta-G solvation = 36.629957 kcal Electronic energy + Delta-G solvation = -22589.562693 eV Core-core repulsion = 19404.295716 eV Total energy + Delta-G solvation = -3185.266976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.49402 -38.78975 -38.25260 -35.80182 -33.64213 -32.22477 -31.94275 -29.48202 -27.49933 -27.24716 -26.85825 -25.14187 -24.12568 -23.67566 -22.01283 -20.33421 -19.88589 -18.81682 -17.93556 -17.19544 -16.82591 -16.46502 -16.10146 -15.70738 -15.65281 -15.45697 -14.89060 -14.50371 -14.40883 -14.23228 -13.97233 -13.77672 -13.50706 -13.23349 -13.21479 -13.09839 -12.96101 -12.78129 -12.59874 -12.48984 -12.21553 -12.08011 -12.06943 -11.93911 -11.55317 -11.29815 -10.96293 -10.60854 -10.52125 -10.33005 -9.89804 -9.45423 -9.18733 -8.83424 -7.95335 -6.12325 -0.48209 0.47616 0.64491 0.74436 1.07158 1.44372 1.45117 1.51912 1.87894 2.47366 2.85183 3.26576 3.57524 3.66268 3.86365 4.00065 4.03224 4.25907 4.31840 4.45672 4.55474 4.57545 4.61949 4.67736 4.73672 4.79013 4.88906 4.94613 5.04286 5.10922 5.15221 5.18511 5.29642 5.30646 5.42947 5.44032 5.50929 5.54803 5.63100 5.69976 5.71267 5.77924 5.99911 6.17260 6.25369 6.34943 6.49839 6.63239 6.97148 7.55073 9.02610 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033259 B = 0.002145 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.662870 B =13053.120461 C =13110.054163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.106 4.106 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.089 3.911 13 N -0.683 5.683 14 C 0.097 3.903 15 C -0.080 4.080 16 C -0.101 4.101 17 C -0.121 4.121 18 C -0.032 4.032 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.214 4.214 23 S 0.100 5.900 24 C -0.104 4.104 25 C -0.113 4.113 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.051 0.949 34 H 0.012 0.988 35 H 0.339 0.661 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.189 0.811 43 H 0.145 0.855 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 2.420 26.459 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 C -0.164 4.164 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.040 4.040 13 N -0.315 5.315 14 C -0.031 4.031 15 C -0.081 4.081 16 C -0.119 4.119 17 C -0.140 4.140 18 C -0.034 4.034 19 C -0.277 4.277 20 C -0.165 4.165 21 C -0.170 4.170 22 C -0.349 4.349 23 S 0.365 5.635 24 C -0.124 4.124 25 C -0.132 4.132 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.059 0.941 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.172 0.828 41 H 0.183 0.817 42 H 0.206 0.794 43 H 0.163 0.837 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.754 3.798 26.133 26.465 hybrid contribution -1.404 -1.838 -1.018 2.527 sum -3.158 1.960 25.115 25.388 Atomic orbital electron populations 1.21667 0.98214 0.98118 0.99911 1.18148 0.92402 0.92818 0.90794 1.21472 0.97086 0.98519 0.99273 1.21402 1.31229 1.11906 0.91860 0.93563 1.25561 0.95395 0.95674 1.01239 1.69969 1.37446 1.23578 1.23305 0.85822 0.78633 0.78801 0.79554 1.20024 1.21212 1.20150 1.21849 0.98462 0.94015 0.89647 1.60585 1.16484 1.53687 1.00764 1.20907 1.00422 0.94626 0.87185 1.19970 0.95279 0.96788 0.96034 1.21058 1.00537 0.95025 0.95299 1.21293 0.95632 1.00275 0.96810 1.18217 0.94932 0.96403 0.93859 1.23130 1.00206 1.02880 1.01468 1.20666 0.96595 1.02454 0.96798 1.20371 1.01678 0.96310 0.98621 1.26114 0.97815 1.06006 1.04997 1.84251 1.23719 1.31206 1.24294 1.21321 1.00162 0.94921 0.95999 1.21187 0.95354 1.00472 0.96159 0.94958 0.92611 0.96257 0.97032 0.93352 0.94938 0.93359 0.93065 0.96931 0.84217 0.90424 0.94070 0.85253 0.85448 0.82755 0.81701 0.79369 0.83729 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 7.92 71.98 0.57 -5.14 16 2 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 3 C -0.11 -5.21 8.09 71.98 0.58 -4.63 16 4 C -0.53 -28.31 8.01 25.60 0.21 -28.11 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.02 1.10 5.15 84.66 0.44 1.54 16 7 N -0.90 -50.75 9.35 21.45 0.20 -50.55 16 8 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.09 3.63 4.59 86.30 0.40 4.03 16 13 N -0.68 -23.58 5.70 -517.93 -2.95 -26.53 16 14 C 0.10 2.72 5.80 85.56 0.50 3.21 16 15 C -0.08 -2.05 5.40 -19.81 -0.11 -2.16 16 16 C -0.10 -2.53 9.68 22.23 0.22 -2.32 16 17 C -0.12 -2.86 9.60 22.53 0.22 -2.64 16 18 C -0.03 -0.73 5.87 -20.09 -0.12 -0.85 16 19 C -0.16 -3.23 6.37 24.02 0.15 -3.08 16 20 C -0.13 -2.25 9.65 21.41 0.21 -2.04 16 21 C -0.14 -1.90 10.16 21.16 0.21 -1.69 16 22 C -0.21 -2.88 11.22 66.77 0.75 -2.13 16 23 S 0.10 1.74 22.26 -56.49 -1.26 0.48 16 24 C -0.10 -2.19 9.54 22.53 0.21 -1.98 16 25 C -0.11 -2.57 9.68 22.23 0.22 -2.36 16 26 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 27 H 0.05 2.95 6.07 -2.39 -0.01 2.93 16 28 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16 31 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 32 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.34 11.64 6.76 -89.69 -0.61 11.03 16 36 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 37 H 0.04 1.08 8.08 -2.39 -0.02 1.07 16 38 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 39 H 0.13 2.67 7.28 -2.91 -0.02 2.65 16 40 H 0.15 2.03 6.89 -2.91 -0.02 2.01 16 41 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.15 2.30 6.76 -2.91 -0.02 2.28 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -59.85 366.52 3.02 -56.83 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.39 Total: 21.87 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 4.62 Total: -47.52 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.75 Total: -77.08 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.26 Total: 0.48 kcal Total: -59.85 3.02 -56.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178921738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.457 kcal (2) G-P(sol) polarization free energy of solvation -59.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds