Wall clock time and date at job start Tue Mar 31 2020 11:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.53004 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.36953 * 120.00003 * 274.23929 * 5 4 3 7 7 H 1.07992 * 120.00067 * 132.54379 * 6 5 4 8 8 C 1.38986 * 119.99837 * 312.53733 * 6 5 4 9 9 N 1.31408 * 120.00159 * 2.79794 * 8 6 5 10 10 Si 1.86793 * 120.00241 * 182.79081 * 8 6 5 11 11 H 1.48504 * 109.47007 * 90.00043 * 10 8 6 12 12 H 1.48496 * 109.47465 * 210.00339 * 10 8 6 13 13 H 1.48506 * 109.46868 * 330.00629 * 10 8 6 14 14 C 1.34770 * 120.00070 * 94.23650 * 5 4 3 15 15 O 1.21653 * 120.00042 * 4.00914 * 14 5 4 16 16 C 1.47232 * 120.00217 * 183.99736 * 14 5 4 17 17 C 1.36489 * 126.18661 * 174.32715 * 16 14 5 18 18 N 1.36242 * 106.74602 * 179.70830 * 17 16 14 19 19 C 1.39823 * 126.23698 * 180.27205 * 18 17 16 20 20 C 1.39119 * 120.07774 * 185.19194 * 19 18 17 21 21 N 1.31998 * 119.91738 * 179.97438 * 20 19 18 22 22 C 1.32223 * 120.05648 * 0.02562 * 21 20 19 23 23 C 1.38259 * 120.15413 * 359.97438 * 22 21 20 24 24 N 1.32181 * 120.08638 * 359.74630 * 23 22 21 25 25 C 1.36209 * 107.53707 * 0.41947 * 18 17 16 26 26 N 1.30132 * 109.00970 * 359.57168 * 25 18 17 27 27 H 1.08996 * 109.47206 * 299.99307 * 1 2 3 28 28 H 1.09002 * 109.47274 * 59.99822 * 1 2 3 29 29 H 1.09006 * 109.46717 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46819 * 240.00668 * 2 1 3 31 31 H 1.08997 * 109.47113 * 120.00617 * 2 1 3 32 32 H 1.09010 * 109.46770 * 60.00242 * 3 2 1 33 33 H 1.09000 * 109.47734 * 300.00783 * 3 2 1 34 34 H 1.09003 * 109.46489 * 60.00760 * 4 3 2 35 35 H 1.08997 * 109.47264 * 300.00819 * 4 3 2 36 36 H 0.97003 * 120.00549 * 179.97438 * 9 8 6 37 37 H 1.08004 * 126.63028 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.04239 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.92128 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.96360 * 179.97438 * 23 22 21 41 41 H 1.07997 * 125.48998 * 179.83726 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2043 3.4990 -1.1813 7 1 3.8184 4.5026 -1.2812 8 6 4.8493 2.8925 -2.2527 9 7 5.2702 1.6520 -2.1494 10 14 5.1176 3.8407 -3.8395 11 1 6.4207 4.5503 -3.7778 12 1 5.1219 2.8966 -4.9857 13 1 4.0236 4.8293 -4.0165 14 6 4.3636 3.4301 1.1655 15 8 4.3037 2.8080 2.2093 16 6 4.7699 4.8452 1.1743 17 6 5.0004 5.6106 2.2806 18 7 5.3580 6.8473 1.8347 19 6 5.6899 7.9485 2.6299 20 6 5.9324 9.1856 2.0414 21 7 6.2450 10.2232 2.7951 22 6 6.3281 10.0872 4.1077 23 6 6.0875 8.8590 4.6953 24 7 5.7687 7.8174 3.9467 25 6 5.3301 6.8167 0.4733 26 7 4.9837 5.6246 0.0831 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9565 -0.8899 34 1 3.9336 0.9287 -0.8892 35 1 3.9330 0.9288 0.8907 36 1 5.7201 1.2285 -2.8973 37 1 4.9203 5.2953 3.3105 38 1 5.8643 9.2971 0.9694 39 1 6.5836 10.9377 4.7224 40 1 6.1566 8.7513 5.7677 41 1 5.5627 7.6467 -0.1774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194719225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:12 Heat of formation + Delta-G solvation = 92.141549 kcal Electronic energy + Delta-G solvation = -25577.949222 eV Core-core repulsion = 21881.088945 eV Total energy + Delta-G solvation = -3696.860276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29550 -40.93257 -38.22706 -35.25234 -35.06087 -33.96384 -33.66041 -31.30049 -30.46648 -29.44661 -28.19678 -25.32885 -24.86514 -24.72907 -23.24203 -21.39677 -21.12157 -20.19114 -19.28082 -18.63797 -17.69005 -17.27327 -16.45631 -15.97660 -15.49014 -15.23730 -14.66621 -14.54485 -14.37739 -14.13794 -13.87450 -13.63062 -13.46506 -13.19860 -12.81906 -12.63772 -12.06896 -12.01578 -11.91849 -11.72862 -11.25650 -11.05435 -10.93396 -10.63528 -10.44827 -10.40081 -10.24880 -10.13594 -9.63598 -9.55820 -9.50878 -8.97614 -8.93036 -8.49620 -8.19067 -7.24265 -6.10056 -3.93401 0.18456 0.63925 2.18454 2.33061 3.00745 3.29127 3.33911 3.37057 3.42837 3.79006 3.82638 3.91801 4.25693 4.57965 4.62323 4.65066 4.72242 4.96094 5.03238 5.12967 5.26625 5.57629 5.61458 5.75476 5.77218 5.91017 6.05812 6.17842 6.27030 6.32659 6.48300 6.53026 6.67922 6.77994 6.85261 6.92067 6.96183 7.21307 7.28591 7.40012 7.57492 7.87906 8.15011 8.28526 8.67743 9.27091 9.60621 10.04102 10.86908 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003744 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.815851 B = 7476.297459 C = 8900.071052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.124 4.124 4 C 0.099 3.901 5 N -0.419 5.419 6 C -0.302 4.302 7 H 0.106 0.894 8 C 0.041 3.959 9 N -0.881 5.881 10 Si 0.924 3.076 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.270 1.270 14 C 0.541 3.459 15 O -0.606 6.606 16 C 0.004 3.996 17 C 0.017 3.983 18 N -0.416 5.416 19 C 0.316 3.684 20 C 0.044 3.956 21 N -0.411 5.411 22 C 0.022 3.978 23 C 0.091 3.909 24 N -0.457 5.457 25 C 0.166 3.834 26 N -0.395 5.395 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.266 0.734 37 H 0.188 0.812 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.179 0.821 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 12.872 7.489 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.162 4.162 4 C -0.023 4.023 5 N -0.134 5.134 6 C -0.431 4.431 7 H 0.123 0.877 8 C -0.162 4.162 9 N -0.519 5.519 10 Si 0.751 3.249 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.195 1.195 14 C 0.329 3.671 15 O -0.492 6.492 16 C -0.122 4.122 17 C -0.114 4.114 18 N -0.102 5.102 19 C 0.084 3.916 20 C -0.120 4.120 21 N -0.124 5.124 22 C -0.137 4.137 23 C -0.071 4.071 24 N -0.175 5.175 25 C -0.116 4.116 26 N -0.111 5.111 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.205 0.795 38 H 0.195 0.805 39 H 0.194 0.806 40 H 0.196 0.804 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.402 12.084 7.006 13.974 hybrid contribution 0.403 0.795 0.008 0.892 sum 0.001 12.879 7.014 14.665 Atomic orbital electron populations 1.21760 0.96803 1.00566 1.01402 1.21423 0.94784 0.97852 1.01631 1.21868 0.97994 0.95306 1.01063 1.21796 0.91120 0.84954 1.04475 1.43319 1.53431 1.11915 1.04773 1.19787 1.34920 0.99980 0.88363 0.87666 1.25526 0.95043 0.95630 1.00012 1.69621 1.38332 1.11722 1.32273 0.85980 0.78996 0.79185 0.80700 1.20431 1.21505 1.19471 1.17200 0.80906 0.84119 0.84848 1.90637 1.60202 1.65561 1.32816 1.21000 1.07226 0.96179 0.87763 1.22792 1.04446 0.83091 1.01052 1.43115 1.51466 1.08239 1.07354 1.19395 0.95412 0.87555 0.89266 1.23330 0.99486 0.87049 1.02092 1.68479 1.07581 1.30130 1.06233 1.23765 0.99205 0.98930 0.91844 1.23722 0.93677 0.88253 1.01413 1.67913 1.12485 1.33243 1.03869 1.25846 1.06794 0.99535 0.79378 1.71379 1.12147 0.99301 1.28274 0.93219 0.93036 0.93505 0.92070 0.92529 0.93606 0.92128 0.85919 0.92924 0.92363 0.79484 0.80535 0.80648 0.80371 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -2.08 5.93 -26.73 -0.16 -2.24 16 3 C -0.12 -2.62 5.52 -26.73 -0.15 -2.77 16 4 C 0.10 2.47 5.13 -4.04 -0.02 2.45 16 5 N -0.42 -11.10 2.51 -116.10 -0.29 -11.39 16 6 C -0.30 -7.96 7.66 -14.99 -0.11 -8.07 16 7 H 0.11 2.76 6.19 -52.49 -0.33 2.43 16 8 C 0.04 1.07 5.39 -17.46 -0.09 0.98 16 9 N -0.88 -23.97 10.87 55.50 0.60 -23.37 16 10 Si 0.92 20.64 29.55 -169.99 -5.02 15.62 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 14 C 0.54 14.20 7.62 -12.61 -0.10 14.10 16 15 O -0.61 -16.74 16.38 5.23 0.09 -16.66 16 16 C 0.00 0.10 6.70 -83.09 -0.56 -0.46 16 17 C 0.02 0.33 10.90 -16.22 -0.18 0.15 16 18 N -0.42 -6.56 2.96 -63.48 -0.19 -6.75 16 19 C 0.32 4.11 7.49 -154.08 -1.15 2.96 16 20 C 0.04 0.46 10.65 -17.15 -0.18 0.28 16 21 N -0.41 -4.08 10.49 -12.91 -0.14 -4.22 16 22 C 0.02 0.17 11.21 -17.38 -0.19 -0.03 16 23 C 0.09 0.76 11.22 -17.39 -0.20 0.56 16 24 N -0.46 -5.74 10.05 -12.10 -0.12 -5.87 16 25 C 0.17 2.62 11.87 -89.60 -1.06 1.56 16 26 N -0.39 -8.32 8.15 -10.96 -0.09 -8.41 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.12 3.23 5.30 -51.93 -0.28 2.96 16 35 H 0.05 1.35 7.25 -51.93 -0.38 0.97 16 36 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.19 3.44 8.06 -52.48 -0.42 3.02 16 38 H 0.18 1.37 6.77 -52.49 -0.36 1.02 16 39 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.21 2.20 7.05 -52.49 -0.37 1.83 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -33.87 351.53 -8.71 -42.58 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.06 Total: 5.49 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -3.79 Total: 7.67 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.22 Total: -60.00 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.09 Total: -16.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.87 -8.71 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194719225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.722 kcal (2) G-P(sol) polarization free energy of solvation -33.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds