Wall clock time and date at job start Tue Mar 31 2020 11:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.53004 * 109.47181 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46895 * 180.02562 * 4 3 2 6 6 C 1.36953 * 120.00003 * 274.23929 * 5 4 3 7 7 H 1.07992 * 120.00067 * 132.54379 * 6 5 4 8 8 C 1.38986 * 119.99837 * 312.53733 * 6 5 4 9 9 N 1.31408 * 120.00159 * 2.79794 * 8 6 5 10 10 Si 1.86793 * 120.00241 * 182.79081 * 8 6 5 11 11 H 1.48504 * 109.47007 * 90.00043 * 10 8 6 12 12 H 1.48496 * 109.47465 * 210.00339 * 10 8 6 13 13 H 1.48506 * 109.46868 * 330.00629 * 10 8 6 14 14 C 1.34770 * 120.00070 * 94.23650 * 5 4 3 15 15 O 1.21653 * 120.00042 * 4.00914 * 14 5 4 16 16 C 1.47232 * 120.00217 * 183.99736 * 14 5 4 17 17 C 1.36489 * 126.18661 * 174.32715 * 16 14 5 18 18 N 1.36242 * 106.74602 * 179.70830 * 17 16 14 19 19 C 1.39823 * 126.23698 * 180.27205 * 18 17 16 20 20 C 1.39119 * 120.07774 * 185.19194 * 19 18 17 21 21 N 1.31998 * 119.91738 * 179.97438 * 20 19 18 22 22 C 1.32223 * 120.05648 * 0.02562 * 21 20 19 23 23 C 1.38259 * 120.15413 * 359.97438 * 22 21 20 24 24 N 1.32181 * 120.08638 * 359.74630 * 23 22 21 25 25 C 1.36209 * 107.53707 * 0.41947 * 18 17 16 26 26 N 1.30132 * 109.00970 * 359.57168 * 25 18 17 27 27 H 1.08996 * 109.47206 * 299.99307 * 1 2 3 28 28 H 1.09002 * 109.47274 * 59.99822 * 1 2 3 29 29 H 1.09006 * 109.46717 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46819 * 240.00668 * 2 1 3 31 31 H 1.08997 * 109.47113 * 120.00617 * 2 1 3 32 32 H 1.09010 * 109.46770 * 60.00242 * 3 2 1 33 33 H 1.09000 * 109.47734 * 300.00783 * 3 2 1 34 34 H 1.09003 * 109.46489 * 60.00760 * 4 3 2 35 35 H 1.08997 * 109.47264 * 300.00819 * 4 3 2 36 36 H 0.97003 * 120.00549 * 179.97438 * 9 8 6 37 37 H 1.08004 * 126.63028 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.04239 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.92128 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.96360 * 179.97438 * 23 22 21 41 41 H 1.07997 * 125.48998 * 179.83726 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0013 6 6 4.2043 3.4990 -1.1813 7 1 3.8184 4.5026 -1.2812 8 6 4.8493 2.8925 -2.2527 9 7 5.2702 1.6520 -2.1494 10 14 5.1176 3.8407 -3.8395 11 1 6.4207 4.5503 -3.7778 12 1 5.1219 2.8966 -4.9857 13 1 4.0236 4.8293 -4.0165 14 6 4.3636 3.4301 1.1655 15 8 4.3037 2.8080 2.2093 16 6 4.7699 4.8452 1.1743 17 6 5.0004 5.6106 2.2806 18 7 5.3580 6.8473 1.8347 19 6 5.6899 7.9485 2.6299 20 6 5.9324 9.1856 2.0414 21 7 6.2450 10.2232 2.7951 22 6 6.3281 10.0872 4.1077 23 6 6.0875 8.8590 4.6953 24 7 5.7687 7.8174 3.9467 25 6 5.3301 6.8167 0.4733 26 7 4.9837 5.6246 0.0831 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8901 33 1 1.6766 1.9565 -0.8899 34 1 3.9336 0.9287 -0.8892 35 1 3.9330 0.9288 0.8907 36 1 5.7201 1.2285 -2.8973 37 1 4.9203 5.2953 3.3105 38 1 5.8643 9.2971 0.9694 39 1 6.5836 10.9377 4.7224 40 1 6.1566 8.7513 5.7677 41 1 5.5627 7.6467 -0.1774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194719225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:11 Heat of formation + Delta-G solvation = 72.057345 kcal Electronic energy + Delta-G solvation = -25578.820138 eV Core-core repulsion = 21881.088945 eV Total energy + Delta-G solvation = -3697.731193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.50674 -41.88256 -40.16006 -37.12073 -36.07240 -35.47456 -34.80206 -33.26897 -31.50065 -30.91507 -29.74577 -26.81603 -26.27242 -25.76929 -24.69021 -22.86149 -22.36275 -21.83779 -20.96369 -20.09842 -18.72299 -18.17199 -17.87450 -17.26759 -17.08650 -16.57226 -16.22081 -16.00462 -15.78133 -15.74611 -15.16808 -15.06975 -14.85080 -14.52878 -14.32438 -13.93729 -13.69602 -13.59108 -13.04395 -12.86939 -12.80917 -12.71553 -12.65269 -12.09657 -12.01222 -11.89771 -11.82254 -11.66675 -11.36650 -11.15001 -10.95368 -10.43327 -10.36830 -10.04329 -9.64059 -9.22428 -8.08339 -5.97960 -0.66189 -0.11369 0.80236 1.23299 1.48874 1.50254 1.62931 1.64251 2.40493 2.61716 2.72373 2.85931 3.06743 3.12769 3.19329 3.22787 3.62442 3.81985 3.96667 4.11139 4.18886 4.27083 4.33102 4.37104 4.42893 4.52635 4.64061 4.81347 4.86220 4.92278 5.02567 5.10700 5.16498 5.22869 5.36779 5.42108 5.48808 5.59331 5.79961 5.89713 6.18394 6.24534 6.57046 6.65351 6.86829 7.26712 7.61849 8.04805 8.89238 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.003744 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.815851 B = 7476.297459 C = 8900.071052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.100 3.900 5 N -0.434 5.434 6 C -0.306 4.306 7 H 0.106 0.894 8 C -0.005 4.005 9 N -0.913 5.913 10 Si 0.990 3.010 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.258 1.258 14 C 0.526 3.474 15 O -0.638 6.638 16 C -0.040 4.040 17 C 0.032 3.968 18 N -0.409 5.409 19 C 0.275 3.725 20 C 0.055 3.945 21 N -0.427 5.427 22 C 0.048 3.952 23 C 0.089 3.911 24 N -0.489 5.489 25 C 0.194 3.806 26 N -0.445 5.445 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.031 0.969 36 H 0.266 0.734 37 H 0.186 0.814 38 H 0.202 0.798 39 H 0.221 0.779 40 H 0.216 0.784 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 16.353 7.648 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.148 4.148 4 C -0.023 4.023 5 N -0.149 5.149 6 C -0.434 4.434 7 H 0.123 0.877 8 C -0.204 4.204 9 N -0.553 5.553 10 Si 0.814 3.186 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.182 1.182 14 C 0.316 3.684 15 O -0.527 6.527 16 C -0.166 4.166 17 C -0.102 4.102 18 N -0.092 5.092 19 C 0.046 3.954 20 C -0.107 4.107 21 N -0.141 5.141 22 C -0.112 4.112 23 C -0.072 4.072 24 N -0.207 5.207 25 C -0.089 4.089 26 N -0.161 5.161 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.203 0.797 38 H 0.218 0.782 39 H 0.237 0.763 40 H 0.232 0.768 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -0.227 15.605 7.159 17.171 hybrid contribution 0.453 -0.037 0.234 0.511 sum 0.226 15.569 7.393 17.236 Atomic orbital electron populations 1.21708 0.94086 1.02369 1.01725 1.21399 0.97109 0.94999 1.01750 1.21724 0.95339 0.97806 0.99969 1.21754 0.93446 0.84586 1.02496 1.43578 1.53831 1.12289 1.05222 1.19939 1.35109 1.00026 0.88371 0.87656 1.26348 0.94622 0.96352 1.03096 1.69763 1.39247 1.13086 1.33225 0.84976 0.79029 0.77997 0.76582 1.20259 1.21243 1.18166 1.17805 0.80339 0.85916 0.84320 1.90570 1.61600 1.66926 1.33588 1.20549 1.10957 0.95203 0.89846 1.22605 1.03288 0.84286 1.00064 1.43079 1.50442 1.07903 1.07744 1.19532 0.98850 0.87336 0.89671 1.23650 0.97882 0.85813 1.03321 1.68634 1.08433 1.29643 1.07399 1.24560 0.95422 0.99830 0.91408 1.24424 0.92443 0.87551 1.02814 1.67822 1.13028 1.35553 1.04266 1.26676 1.03275 0.99058 0.79859 1.71167 1.15023 1.01229 1.28725 0.92960 0.92679 0.90951 0.92009 0.92384 0.94726 0.92900 0.87405 0.95026 0.92378 0.79721 0.78167 0.76265 0.76774 0.72051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.30 16 2 C -0.11 -4.07 5.93 30.59 0.18 -3.89 16 3 C -0.11 -4.88 5.52 30.60 0.17 -4.71 16 4 C 0.10 5.29 5.13 86.38 0.44 5.74 16 5 N -0.43 -24.33 2.51 -639.46 -1.60 -25.94 16 6 C -0.31 -16.73 7.66 84.07 0.64 -16.09 16 7 H 0.11 5.68 6.19 -2.91 -0.02 5.66 16 8 C 0.00 -0.25 5.39 84.94 0.46 0.20 16 9 N -0.91 -51.52 10.87 21.67 0.24 -51.28 16 10 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 13 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 14 C 0.53 29.40 7.62 86.61 0.66 30.06 16 15 O -0.64 -37.71 16.38 -4.20 -0.07 -37.78 16 16 C -0.04 -1.90 6.70 40.49 0.27 -1.62 16 17 C 0.03 1.26 10.90 83.60 0.91 2.17 16 18 N -0.41 -12.56 2.96 -354.74 -1.05 -13.61 16 19 C 0.28 6.66 7.49 132.73 0.99 7.65 16 20 C 0.05 0.97 10.65 84.88 0.90 1.87 16 21 N -0.43 -6.80 10.49 -194.74 -2.04 -8.84 16 22 C 0.05 0.51 11.21 84.64 0.95 1.45 16 23 C 0.09 1.17 11.22 84.65 0.95 2.12 16 24 N -0.49 -11.40 10.05 -192.18 -1.93 -13.34 16 25 C 0.19 5.85 11.87 179.99 2.14 7.98 16 26 N -0.44 -18.98 8.15 -188.59 -1.54 -20.51 16 27 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.11 6.04 5.30 -2.39 -0.01 6.03 16 35 H 0.03 1.74 7.25 -2.39 -0.02 1.72 16 36 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.19 7.16 8.06 -2.91 -0.02 7.14 16 38 H 0.20 2.31 6.77 -2.91 -0.02 2.29 16 39 H 0.22 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.26 4.52 7.05 -2.91 -0.02 4.50 16 Total: -1.00 -79.96 351.53 5.47 -74.49 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 1.06 Total: 22.50 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 10.38 Total: 29.64 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -7.93 Total: -133.52 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.07 Total: -37.78 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -79.96 5.47 -74.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194719225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.544 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds