Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47343 * 2 1 4 4 C 1.52999 * 109.47343 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46980 * 180.02562 * 4 3 2 6 6 C 1.36973 * 120.00148 * 264.88073 * 5 4 3 7 7 H 1.07992 * 119.99872 * 125.03917 * 6 5 4 8 8 C 1.38985 * 119.99714 * 305.03851 * 6 5 4 9 9 N 1.31413 * 120.00106 * 4.62877 * 8 6 5 10 10 Si 1.86797 * 119.99617 * 184.63198 * 8 6 5 11 11 H 1.48498 * 109.47284 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47156 * 120.00037 * 10 8 6 13 13 H 1.48507 * 109.47049 * 239.99840 * 10 8 6 14 14 C 1.34773 * 119.99629 * 84.88708 * 5 4 3 15 15 O 1.21636 * 120.00370 * 3.33417 * 14 5 4 16 16 C 1.47358 * 119.99805 * 183.34392 * 14 5 4 17 17 C 1.41435 * 126.41158 * 352.38244 * 16 14 5 18 18 N 1.30402 * 108.09571 * 179.97438 * 17 16 14 19 19 N 1.39936 * 108.93894 * 359.77342 * 18 17 16 20 20 C 1.39484 * 125.78192 * 180.26033 * 19 18 17 21 21 N 1.32329 * 119.18809 * 179.86051 * 20 19 18 22 22 C 1.32278 * 120.75857 * 179.71700 * 21 20 19 23 23 C 1.38621 * 119.17074 * 0.54810 * 22 21 20 24 24 C 1.38628 * 118.51788 * 359.72777 * 23 22 21 25 25 N 1.32273 * 119.16969 * 0.02562 * 24 23 22 26 26 C 1.34731 * 108.43438 * 0.37507 * 19 18 17 27 27 H 1.09001 * 109.46827 * 299.99555 * 1 2 3 28 28 H 1.08994 * 109.47231 * 59.99356 * 1 2 3 29 29 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46827 * 240.00445 * 2 1 3 31 31 H 1.09000 * 109.47667 * 120.00730 * 2 1 3 32 32 H 1.09001 * 109.46796 * 60.00426 * 3 2 1 33 33 H 1.08998 * 109.46831 * 300.00806 * 3 2 1 34 34 H 1.09001 * 109.46827 * 60.00445 * 4 3 2 35 35 H 1.08994 * 109.47231 * 300.00644 * 4 3 2 36 36 H 0.97001 * 119.99741 * 180.02562 * 9 8 6 37 37 H 1.07998 * 125.95362 * 359.97406 * 17 16 14 38 38 H 1.07997 * 120.41083 * 180.27138 * 22 21 20 39 39 H 1.08003 * 120.74082 * 179.75171 * 23 22 21 40 40 H 1.07997 * 120.41936 * 179.97438 * 24 23 22 41 41 H 1.08000 * 126.32003 * 179.90333 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3859 3.4349 -1.1813 7 1 3.9285 4.3763 -1.4472 8 6 5.3071 2.8434 -2.0376 9 7 5.7952 1.6557 -1.7585 10 14 5.8512 3.7369 -3.5852 11 1 5.1589 5.0479 -3.6692 12 1 7.3196 3.9538 -3.5412 13 1 5.5071 2.9188 -4.7759 14 6 4.1854 3.4930 1.1629 15 8 3.9527 2.9313 2.2164 16 6 4.6059 4.9053 1.1580 17 6 5.0530 5.6443 0.0380 18 7 5.3310 6.8545 0.4361 19 7 5.0750 6.9514 1.8084 20 6 5.2471 8.0926 2.5917 21 7 4.9609 8.0387 3.8825 22 6 5.1178 9.1008 4.6552 23 6 5.5773 10.2823 4.0945 24 6 5.8619 10.3044 2.7379 25 7 5.6870 9.2043 2.0245 26 6 4.6366 5.7547 2.2455 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8909 35 1 3.9338 0.9285 0.8890 36 1 6.4384 1.2430 -2.3560 37 1 5.1476 5.2713 -0.9710 38 1 4.8866 9.0492 5.7089 39 1 5.7108 11.1659 4.7010 40 1 6.2212 11.2085 2.2692 41 1 4.3564 5.5072 3.2587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197827108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = 110.897629 kcal Electronic energy + Delta-G solvation = -25589.995853 eV Core-core repulsion = 21893.948901 eV Total energy + Delta-G solvation = -3696.046952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59538 -40.45338 -38.23684 -35.24611 -34.17081 -34.03145 -33.56133 -31.52481 -30.42017 -29.85175 -28.20841 -25.21864 -24.95840 -24.63618 -23.07455 -21.17338 -20.99342 -20.25904 -19.22617 -18.46289 -17.52236 -16.95968 -16.09018 -15.85336 -15.48777 -14.94184 -14.79209 -14.53976 -14.25242 -14.08013 -13.76452 -13.64820 -13.57702 -12.81039 -12.77356 -12.30265 -12.11707 -11.94034 -11.42503 -11.30607 -11.27650 -11.15406 -10.97216 -10.61462 -10.52735 -10.44370 -10.41643 -10.26910 -10.18771 -9.68558 -9.42078 -9.00259 -8.93504 -8.57824 -8.12214 -7.29561 -6.40009 -4.31852 0.44010 0.85379 2.11862 2.16642 2.95149 3.10768 3.20790 3.20962 3.68864 3.75526 4.02132 4.23765 4.35038 4.51893 4.76151 4.82223 4.85044 4.90165 5.32748 5.37335 5.51928 5.55907 5.69652 5.71231 5.89034 5.99462 6.10623 6.16545 6.27549 6.34846 6.43711 6.52181 6.62488 6.68962 6.76606 6.87744 7.07996 7.18997 7.28694 7.29702 7.49613 7.66947 8.08380 8.18254 8.31310 8.98331 9.48794 9.93617 10.60626 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013627 B = 0.003882 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.255413 B = 7211.313597 C = 8808.370038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.124 3.876 5 N -0.434 5.434 6 C -0.353 4.353 7 H 0.092 0.908 8 C 0.055 3.945 9 N -0.855 5.855 10 Si 0.902 3.098 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.555 3.445 15 O -0.602 6.602 16 C -0.221 4.221 17 C 0.106 3.894 18 N -0.289 5.289 19 N -0.323 5.323 20 C 0.571 3.429 21 N -0.539 5.539 22 C 0.182 3.818 23 C -0.261 4.261 24 C 0.178 3.822 25 N -0.512 5.512 26 C 0.114 3.886 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.271 0.729 37 H 0.231 0.769 38 H 0.177 0.823 39 H 0.153 0.847 40 H 0.176 0.824 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 11.223 6.796 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.001 3.999 5 N -0.151 5.151 6 C -0.481 4.481 7 H 0.109 0.891 8 C -0.153 4.153 9 N -0.489 5.489 10 Si 0.727 3.273 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.202 1.202 14 C 0.344 3.656 15 O -0.488 6.488 16 C -0.234 4.234 17 C -0.084 4.084 18 N -0.105 5.105 19 N -0.102 5.102 20 C 0.218 3.782 21 N -0.258 5.258 22 C 0.015 3.985 23 C -0.284 4.284 24 C 0.010 3.990 25 N -0.229 5.229 26 C -0.029 4.029 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.247 0.753 38 H 0.194 0.806 39 H 0.170 0.830 40 H 0.193 0.807 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.895 11.117 6.320 12.927 hybrid contribution 0.223 0.373 -0.061 0.439 sum -1.672 11.489 6.258 13.190 Atomic orbital electron populations 1.21760 0.96742 1.00624 1.01447 1.21428 0.94878 0.97795 1.01620 1.21952 0.98125 0.95474 1.01306 1.21375 0.90668 0.84905 1.02993 1.43022 1.56157 1.11619 1.04309 1.19430 1.23909 1.07629 0.97168 0.89122 1.25654 0.94994 0.95613 0.99038 1.69800 1.28062 1.13738 1.37345 0.86267 0.79322 0.80187 0.81548 1.18487 1.20046 1.20238 1.17400 0.79450 0.84567 0.84193 1.90621 1.56763 1.69871 1.31574 1.20676 1.13163 0.97175 0.92406 1.26209 0.91596 0.88348 1.02289 1.77610 1.24761 1.21547 0.86556 1.45005 1.51491 1.06077 1.07593 1.18538 0.90136 0.85027 0.84530 1.67767 1.20910 1.32965 1.04163 1.23084 0.89203 0.86535 0.99716 1.22837 1.06324 1.01313 0.97923 1.23213 0.89892 0.95252 0.90612 1.67914 1.15895 0.98901 1.40158 1.23015 0.96254 0.83131 1.00499 0.93123 0.93069 0.93474 0.92217 0.92405 0.92929 0.92351 0.88234 0.92980 0.91797 0.75336 0.80563 0.82975 0.80729 0.79372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.60 5.50 -26.73 -0.15 -2.74 16 4 C 0.12 2.89 4.86 -4.04 -0.02 2.87 16 5 N -0.43 -10.76 2.45 -116.05 -0.28 -11.05 16 6 C -0.35 -8.51 6.32 -14.98 -0.09 -8.61 16 7 H 0.09 2.10 5.91 -52.49 -0.31 1.79 16 8 C 0.06 1.33 5.33 -17.45 -0.09 1.24 16 9 N -0.86 -21.82 11.47 55.50 0.64 -21.18 16 10 Si 0.90 18.49 29.00 -169.99 -4.93 13.56 16 11 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.56 13.95 7.59 -12.55 -0.10 13.85 16 15 O -0.60 -16.14 16.55 5.25 0.09 -16.05 16 16 C -0.22 -5.00 6.02 -105.05 -0.63 -5.63 16 17 C 0.11 2.30 10.23 -16.94 -0.17 2.12 16 18 N -0.29 -6.15 12.27 30.88 0.38 -5.77 16 19 N -0.32 -6.44 3.75 -13.32 -0.05 -6.49 16 20 C 0.57 9.84 8.44 -321.65 -2.71 7.12 16 21 N -0.54 -7.84 9.85 -13.73 -0.14 -7.98 16 22 C 0.18 1.74 11.30 -17.22 -0.19 1.54 16 23 C -0.26 -2.02 10.17 -39.30 -0.40 -2.42 16 24 C 0.18 1.80 11.30 -17.22 -0.19 1.61 16 25 N -0.51 -8.01 10.22 -13.72 -0.14 -8.15 16 26 C 0.11 2.31 10.85 -16.36 -0.18 2.13 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.10 2.44 6.08 -51.93 -0.32 2.13 16 35 H 0.05 1.28 7.53 -51.93 -0.39 0.89 16 36 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 37 H 0.23 4.93 4.21 -52.49 -0.22 4.71 16 38 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.19 3.50 8.02 -52.49 -0.42 3.08 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -31.70 351.87 -8.88 -40.58 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.02 Total: 7.98 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -4.73 Total: 9.25 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.41 Total: -60.62 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.93 Total: 13.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.70 -8.88 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197827108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.480 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds