Wall clock time and date at job start Tue Mar 31 2020 11:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47088 * 2 1 4 4 C 1.52998 * 109.46874 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99528 * 269.99899 * 5 4 3 7 7 H 1.07998 * 120.00361 * 320.88166 * 6 5 4 8 8 C 1.38815 * 119.99654 * 140.88465 * 6 5 4 9 9 N 1.31620 * 119.99670 * 336.85316 * 8 6 5 10 10 Si 1.86796 * 120.00011 * 156.85346 * 8 6 5 11 11 H 1.48508 * 109.47106 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47116 * 119.99834 * 10 8 6 13 13 H 1.48498 * 109.46992 * 240.00119 * 10 8 6 14 14 C 1.46491 * 120.00004 * 89.99548 * 5 4 3 15 15 C 1.50700 * 109.47286 * 84.14250 * 14 5 4 16 16 C 1.38359 * 119.85527 * 265.11521 * 15 14 5 17 17 C 1.37961 * 120.14555 * 180.02562 * 16 15 14 18 18 C 1.39570 * 119.85313 * 0.02562 * 17 16 15 19 19 C 1.47832 * 120.14481 * 179.97438 * 18 17 16 20 20 C 1.34794 * 125.26799 * 179.71875 * 19 18 17 21 21 C 1.37973 * 114.70126 * 179.79292 * 20 19 18 22 22 C 1.33616 * 115.06234 * 0.50023 * 21 20 19 23 23 S 1.75867 * 109.76087 * 359.73296 * 22 21 20 24 24 C 1.39576 * 119.71460 * 359.97438 * 18 17 16 25 25 C 1.37960 * 119.84817 * 0.02562 * 24 18 17 26 26 H 1.08997 * 109.47196 * 299.99875 * 1 2 3 27 27 H 1.09000 * 109.47604 * 59.99842 * 1 2 3 28 28 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47244 * 240.00045 * 2 1 3 30 30 H 1.09000 * 109.47604 * 120.00158 * 2 1 3 31 31 H 1.08997 * 109.47000 * 60.00005 * 3 2 1 32 32 H 1.09002 * 109.46771 * 300.00034 * 3 2 1 33 33 H 1.08997 * 109.47533 * 60.00050 * 4 3 2 34 34 H 1.09002 * 109.47220 * 299.99478 * 4 3 2 35 35 H 0.97001 * 119.99587 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47543 * 324.13918 * 14 5 4 37 37 H 1.09004 * 109.47411 * 204.14265 * 14 5 4 38 38 H 1.08000 * 119.92665 * 0.04721 * 16 15 14 39 39 H 1.07994 * 120.07333 * 180.27415 * 17 16 15 40 40 H 1.07999 * 122.64967 * 359.97438 * 20 19 18 41 41 H 1.08000 * 122.46798 * 180.23622 * 21 20 19 42 42 H 1.07997 * 125.12051 * 179.75506 * 22 21 20 43 43 H 1.07997 * 120.07492 * 179.97438 * 24 18 17 44 44 H 1.08006 * 119.92446 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2860 3.4699 -1.1857 7 1 4.7225 2.9358 -2.0167 8 6 3.9559 4.8116 -1.3195 9 7 3.0447 5.3465 -0.5346 10 14 4.8046 5.8578 -2.6135 11 1 5.7819 5.0253 -3.3602 12 1 3.7918 6.3979 -3.5558 13 1 5.5154 6.9819 -1.9530 14 6 4.3029 3.5136 1.2689 15 6 5.6775 3.1606 1.7758 16 6 5.8327 2.1280 2.6835 17 6 7.0883 1.8001 3.1519 18 6 8.2032 2.5130 2.7085 19 6 9.5516 2.1675 3.2066 20 6 10.6958 2.7815 2.8451 21 6 11.8325 2.2844 3.4489 22 6 11.6277 1.2663 4.2895 23 16 9.9119 0.8866 4.3569 24 6 8.0398 3.5536 1.7927 25 6 6.7787 3.8712 1.3323 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 2.8137 6.2839 -0.6284 36 1 3.5557 3.2052 2.0002 37 1 4.2379 4.5908 1.1154 38 1 4.9691 1.5772 3.0259 39 1 7.2086 0.9910 3.8570 40 1 10.7205 3.5998 2.1408 41 1 12.8158 2.6859 3.2530 42 1 12.3997 0.7539 4.8444 43 1 8.8985 4.1093 1.4460 44 1 6.6508 4.6759 0.6233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231431373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:29 Heat of formation + Delta-G solvation = 56.754763 kcal Electronic energy + Delta-G solvation = -23119.779692 eV Core-core repulsion = 19935.385392 eV Total energy + Delta-G solvation = -3184.394299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -39.05450 -37.50187 -36.14646 -34.06974 -32.21625 -31.12932 -30.50215 -28.82904 -27.57129 -25.60966 -24.13124 -23.40604 -22.27219 -21.39531 -20.61226 -19.81123 -18.86092 -17.68488 -16.80190 -15.78860 -15.00577 -14.83827 -14.66955 -14.49301 -14.34289 -13.83675 -13.52512 -13.37741 -13.29254 -13.05918 -12.73446 -12.39011 -12.18132 -12.14054 -11.97854 -11.79370 -11.45090 -11.22080 -11.03254 -10.85914 -10.63941 -10.56073 -10.45775 -10.36952 -10.26388 -9.98292 -9.90958 -9.63752 -9.26560 -8.54690 -8.52499 -8.43837 -7.55197 -6.63709 -5.89535 -3.41210 0.64286 1.59396 1.92480 1.99062 2.02187 2.90280 3.29959 3.40356 3.43514 4.31560 4.46193 4.80111 4.99908 5.23268 5.29328 5.32567 5.38305 5.44761 5.47693 5.55518 5.67516 5.75835 5.79849 5.88424 6.02248 6.07958 6.15255 6.21947 6.22636 6.37403 6.39955 6.42313 6.43823 6.48722 6.53746 6.65580 6.70343 6.74990 6.91476 6.99953 7.09818 7.26426 7.35554 7.47097 7.57264 7.78076 8.46428 9.10777 9.72691 10.33851 11.12340 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.003636 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.073864 B = 7699.053749 C = 9537.251772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.574 5.574 6 C -0.259 4.259 7 H 0.059 0.941 8 C 0.018 3.982 9 N -0.878 5.878 10 Si 0.888 3.112 11 H -0.274 1.274 12 H -0.289 1.289 13 H -0.286 1.286 14 C 0.181 3.819 15 C -0.061 4.061 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.056 4.056 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.125 4.125 22 C -0.233 4.233 23 S 0.103 5.897 24 C -0.099 4.099 25 C -0.097 4.097 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.255 0.745 36 H 0.034 0.966 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.161 0.839 43 H 0.116 0.884 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.507 -7.408 8.660 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.292 5.292 6 C -0.389 4.389 7 H 0.077 0.923 8 C -0.183 4.183 9 N -0.519 5.519 10 Si 0.716 3.284 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.212 1.212 14 C 0.055 3.945 15 C -0.065 4.065 16 C -0.139 4.139 17 C -0.130 4.130 18 C -0.058 4.058 19 C -0.225 4.225 20 C -0.183 4.183 21 C -0.156 4.156 22 C -0.368 4.368 23 S 0.368 5.632 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.178 0.822 43 H 0.134 0.866 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.587 -8.334 9.448 15.246 hybrid contribution 1.355 1.624 -1.425 2.550 sum 9.941 -6.710 8.023 14.430 Atomic orbital electron populations 1.21755 0.96808 1.00356 1.01679 1.21535 0.95088 0.98683 1.00833 1.22131 0.98996 0.93850 1.02203 1.20924 0.91422 0.87125 0.98194 1.43716 1.73611 1.10337 1.01570 1.19041 1.35013 0.93395 0.91433 0.92293 1.25177 0.96104 0.99289 0.97748 1.70089 1.28226 1.12889 1.40709 0.86476 0.79685 0.80601 0.81598 1.19916 1.21548 1.21241 1.19915 0.87150 1.00698 0.86769 1.21461 0.99584 0.93254 0.92216 1.20954 0.96250 0.98149 0.98521 1.21019 0.92447 0.99231 1.00310 1.17853 0.89052 0.98744 1.00177 1.23130 0.96735 1.00428 1.02165 1.20315 0.90903 1.03265 1.03828 1.20046 0.99676 0.97542 0.98289 1.25619 0.98946 1.04687 1.07593 1.84112 1.01567 1.34324 1.43205 1.21103 0.97518 0.96497 0.96769 1.21042 0.91407 1.00214 0.98943 0.93113 0.92943 0.93757 0.92752 0.93014 0.93048 0.91781 0.94089 0.94940 0.93495 0.94715 0.88665 0.86521 0.87134 0.84190 0.84490 0.82163 0.86602 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.15 0.37 -1.68 16 2 C -0.12 -1.89 5.93 -26.73 -0.16 -2.05 16 3 C -0.13 -2.53 5.54 -26.73 -0.15 -2.68 16 4 C 0.15 3.06 5.69 -4.04 -0.02 3.04 16 5 N -0.57 -13.51 2.40 -174.61 -0.42 -13.93 16 6 C -0.26 -6.74 9.42 -15.06 -0.14 -6.88 16 7 H 0.06 1.57 7.93 -52.49 -0.42 1.16 16 8 C 0.02 0.48 4.83 -17.43 -0.08 0.39 16 9 N -0.88 -23.97 11.80 55.49 0.65 -23.32 16 10 Si 0.89 20.63 29.61 -169.99 -5.03 15.60 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.18 4.01 5.35 -5.20 -0.03 3.98 16 15 C -0.06 -1.20 5.46 -104.53 -0.57 -1.78 16 16 C -0.12 -2.08 9.55 -39.64 -0.38 -2.45 16 17 C -0.11 -1.78 9.60 -39.19 -0.38 -2.16 16 18 C -0.06 -0.90 5.87 -104.98 -0.62 -1.52 16 19 C -0.11 -1.53 6.37 -36.88 -0.24 -1.77 16 20 C -0.15 -1.98 9.65 -40.90 -0.39 -2.37 16 21 C -0.13 -1.37 10.16 -41.30 -0.42 -1.79 16 22 C -0.23 -2.46 11.22 29.11 0.33 -2.13 16 23 S 0.10 1.24 22.26 -107.50 -2.39 -1.15 16 24 C -0.10 -1.66 9.54 -39.18 -0.37 -2.03 16 25 C -0.10 -1.86 9.70 -39.64 -0.38 -2.24 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 34 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.03 0.74 8.02 -51.93 -0.42 0.33 16 37 H 0.10 2.38 5.77 -51.93 -0.30 2.08 16 38 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.11 1.55 7.28 -52.49 -0.38 1.17 16 40 H 0.14 1.64 6.89 -52.49 -0.36 1.28 16 41 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 1.68 6.76 -52.49 -0.35 1.33 16 44 H 0.13 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -27.36 377.40 -11.99 -39.35 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.85 Total: 3.87 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -3.64 Total: -26.11 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.24 Total: -37.24 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.39 Total: -1.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.36 -11.99 -39.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231431373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.106 kcal (2) G-P(sol) polarization free energy of solvation -27.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds