Wall clock time and date at job start Tue Mar 31 2020 11:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47088 * 2 1 4 4 C 1.52998 * 109.46874 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46995 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99528 * 269.99899 * 5 4 3 7 7 H 1.07998 * 120.00361 * 320.88166 * 6 5 4 8 8 C 1.38815 * 119.99654 * 140.88465 * 6 5 4 9 9 N 1.31620 * 119.99670 * 336.85316 * 8 6 5 10 10 Si 1.86796 * 120.00011 * 156.85346 * 8 6 5 11 11 H 1.48508 * 109.47106 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47116 * 119.99834 * 10 8 6 13 13 H 1.48498 * 109.46992 * 240.00119 * 10 8 6 14 14 C 1.46491 * 120.00004 * 89.99548 * 5 4 3 15 15 C 1.50700 * 109.47286 * 84.14250 * 14 5 4 16 16 C 1.38359 * 119.85527 * 265.11521 * 15 14 5 17 17 C 1.37961 * 120.14555 * 180.02562 * 16 15 14 18 18 C 1.39570 * 119.85313 * 0.02562 * 17 16 15 19 19 C 1.47832 * 120.14481 * 179.97438 * 18 17 16 20 20 C 1.34794 * 125.26799 * 179.71875 * 19 18 17 21 21 C 1.37973 * 114.70126 * 179.79292 * 20 19 18 22 22 C 1.33616 * 115.06234 * 0.50023 * 21 20 19 23 23 S 1.75867 * 109.76087 * 359.73296 * 22 21 20 24 24 C 1.39576 * 119.71460 * 359.97438 * 18 17 16 25 25 C 1.37960 * 119.84817 * 0.02562 * 24 18 17 26 26 H 1.08997 * 109.47196 * 299.99875 * 1 2 3 27 27 H 1.09000 * 109.47604 * 59.99842 * 1 2 3 28 28 H 1.08999 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47244 * 240.00045 * 2 1 3 30 30 H 1.09000 * 109.47604 * 120.00158 * 2 1 3 31 31 H 1.08997 * 109.47000 * 60.00005 * 3 2 1 32 32 H 1.09002 * 109.46771 * 300.00034 * 3 2 1 33 33 H 1.08997 * 109.47533 * 60.00050 * 4 3 2 34 34 H 1.09002 * 109.47220 * 299.99478 * 4 3 2 35 35 H 0.97001 * 119.99587 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47543 * 324.13918 * 14 5 4 37 37 H 1.09004 * 109.47411 * 204.14265 * 14 5 4 38 38 H 1.08000 * 119.92665 * 0.04721 * 16 15 14 39 39 H 1.07994 * 120.07333 * 180.27415 * 17 16 15 40 40 H 1.07999 * 122.64967 * 359.97438 * 20 19 18 41 41 H 1.08000 * 122.46798 * 180.23622 * 21 20 19 42 42 H 1.07997 * 125.12051 * 179.75506 * 22 21 20 43 43 H 1.07997 * 120.07492 * 179.97438 * 24 18 17 44 44 H 1.08006 * 119.92446 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2860 3.4699 -1.1857 7 1 4.7225 2.9358 -2.0167 8 6 3.9559 4.8116 -1.3195 9 7 3.0447 5.3465 -0.5346 10 14 4.8046 5.8578 -2.6135 11 1 5.7819 5.0253 -3.3602 12 1 3.7918 6.3979 -3.5558 13 1 5.5154 6.9819 -1.9530 14 6 4.3029 3.5136 1.2689 15 6 5.6775 3.1606 1.7758 16 6 5.8327 2.1280 2.6835 17 6 7.0883 1.8001 3.1519 18 6 8.2032 2.5130 2.7085 19 6 9.5516 2.1675 3.2066 20 6 10.6958 2.7815 2.8451 21 6 11.8325 2.2844 3.4489 22 6 11.6277 1.2663 4.2895 23 16 9.9119 0.8866 4.3569 24 6 8.0398 3.5536 1.7927 25 6 6.7787 3.8712 1.3323 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 2.8137 6.2839 -0.6284 36 1 3.5557 3.2052 2.0002 37 1 4.2379 4.5908 1.1154 38 1 4.9691 1.5772 3.0259 39 1 7.2086 0.9910 3.8570 40 1 10.7205 3.5998 2.1408 41 1 12.8158 2.6859 3.2530 42 1 12.3997 0.7539 4.8444 43 1 8.8985 4.1093 1.4460 44 1 6.6508 4.6759 0.6233 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231431373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:28 Heat of formation + Delta-G solvation = 47.186136 kcal Electronic energy + Delta-G solvation = -23120.194618 eV Core-core repulsion = 19935.385392 eV Total energy + Delta-G solvation = -3184.809226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38427 -38.60053 -37.71179 -35.55458 -33.77244 -32.75466 -31.86289 -30.10493 -29.06189 -27.12904 -25.64884 -24.62564 -23.61088 -22.80780 -22.00494 -21.43231 -19.84883 -18.87592 -18.55451 -16.98364 -16.63967 -16.32778 -16.07497 -15.93943 -15.61814 -15.39824 -15.22346 -14.68263 -14.41092 -14.33904 -13.94841 -13.68386 -13.44117 -13.34555 -13.28916 -13.06110 -13.04674 -12.88647 -12.67268 -12.36918 -12.15641 -11.96582 -11.88307 -11.85177 -11.78251 -11.57481 -11.47426 -11.24866 -10.53387 -10.42491 -9.81891 -9.42544 -8.77113 -8.55759 -7.87122 -5.43498 -0.41694 0.55328 0.66083 0.84198 1.08767 1.41407 1.46486 1.55557 1.90866 2.49520 2.96048 3.23987 3.69140 3.80440 3.97860 4.07690 4.18260 4.24588 4.28616 4.33049 4.45804 4.46228 4.56700 4.59534 4.68331 4.71184 4.86986 4.89403 4.99697 5.06133 5.07837 5.10298 5.15580 5.19221 5.23287 5.37008 5.40042 5.46875 5.51212 5.54860 5.61887 5.65104 5.66951 5.76258 5.95015 6.12452 6.48069 7.16012 7.83706 8.39764 9.11499 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012245 B = 0.003636 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.073864 B = 7699.053749 C = 9537.251772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.119 4.119 4 C 0.148 3.852 5 N -0.589 5.589 6 C -0.265 4.265 7 H 0.047 0.953 8 C -0.021 4.021 9 N -0.908 5.908 10 Si 0.942 3.058 11 H -0.271 1.271 12 H -0.291 1.291 13 H -0.285 1.285 14 C 0.192 3.808 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.044 4.044 19 C -0.153 4.153 20 C -0.143 4.143 21 C -0.139 4.139 22 C -0.214 4.214 23 S 0.109 5.891 24 C -0.104 4.104 25 C -0.112 4.112 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.252 0.748 36 H 0.033 0.967 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.135 0.865 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 -9.421 10.096 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.159 4.159 4 C 0.023 3.977 5 N -0.308 5.308 6 C -0.396 4.396 7 H 0.065 0.935 8 C -0.220 4.220 9 N -0.551 5.551 10 Si 0.770 3.230 11 H -0.195 1.195 12 H -0.218 1.218 13 H -0.211 1.211 14 C 0.066 3.934 15 C -0.088 4.088 16 C -0.135 4.135 17 C -0.131 4.131 18 C -0.046 4.046 19 C -0.270 4.270 20 C -0.174 4.174 21 C -0.169 4.169 22 C -0.349 4.349 23 S 0.375 5.625 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.210 0.790 43 H 0.153 0.847 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.142 -10.367 10.895 18.717 hybrid contribution 0.781 2.159 -1.736 2.878 sum 11.922 -8.208 9.159 17.129 Atomic orbital electron populations 1.21734 0.95487 1.01931 1.01243 1.21469 0.96233 0.95667 1.01999 1.21950 0.98070 0.96254 0.99663 1.21009 0.92146 0.85821 0.98739 1.43891 1.74493 1.11158 1.01294 1.19114 1.34442 0.93826 0.92171 0.93511 1.25708 0.96620 1.00098 0.99550 1.70186 1.29701 1.12756 1.42470 0.85622 0.78647 0.79152 0.79552 1.19511 1.21780 1.21137 1.19637 0.88939 0.98549 0.86285 1.21141 0.97996 0.95191 0.94483 1.21045 0.97545 0.97246 0.97659 1.21254 0.91746 0.99710 1.00406 1.18094 0.90419 0.97432 0.98646 1.23089 0.96076 1.02976 1.04842 1.20641 0.91205 1.02596 1.02924 1.20322 1.00293 0.97880 0.98371 1.26102 0.98595 1.03777 1.06440 1.84068 1.02985 1.33269 1.42216 1.21237 0.97014 0.97156 0.97016 1.20945 0.92637 1.00170 0.99330 0.93197 0.93836 0.91118 0.92107 0.91225 0.94517 0.95300 0.94569 0.93095 0.93883 0.94841 0.92033 0.85136 0.84783 0.83633 0.81745 0.79022 0.84685 0.87874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.12 -3.42 5.93 30.59 0.18 -3.24 16 3 C -0.12 -4.71 5.54 30.60 0.17 -4.54 16 4 C 0.15 6.20 5.69 86.38 0.49 6.69 16 5 N -0.59 -28.89 2.40 -706.33 -1.69 -30.59 16 6 C -0.27 -14.40 9.42 84.03 0.79 -13.61 16 7 H 0.05 2.61 7.93 -2.91 -0.02 2.59 16 8 C -0.02 -1.15 4.83 84.86 0.41 -0.74 16 9 N -0.91 -52.06 11.80 21.65 0.26 -51.80 16 10 Si 0.94 44.01 29.61 68.60 2.03 46.04 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 14 C 0.19 8.95 5.35 85.63 0.46 9.40 16 15 C -0.08 -3.44 5.46 -19.81 -0.11 -3.54 16 16 C -0.12 -3.97 9.55 22.23 0.21 -3.76 16 17 C -0.11 -3.44 9.60 22.53 0.22 -3.22 16 18 C -0.04 -1.36 5.87 -20.09 -0.12 -1.48 16 19 C -0.15 -4.02 6.37 24.02 0.15 -3.87 16 20 C -0.14 -3.28 9.65 21.42 0.21 -3.07 16 21 C -0.14 -2.50 10.16 21.16 0.21 -2.29 16 22 C -0.21 -3.58 11.22 66.77 0.75 -2.83 16 23 S 0.11 2.30 22.26 -56.49 -1.26 1.04 16 24 C -0.10 -3.48 9.54 22.53 0.21 -3.27 16 25 C -0.11 -4.43 9.70 22.23 0.22 -4.22 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 34 H 0.05 1.92 7.96 -2.39 -0.02 1.90 16 35 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.03 1.51 8.02 -2.38 -0.02 1.49 16 37 H 0.06 3.29 5.77 -2.38 -0.01 3.27 16 38 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.13 3.43 7.28 -2.91 -0.02 3.40 16 40 H 0.15 3.06 6.89 -2.91 -0.02 3.04 16 41 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.14 3.84 6.76 -2.91 -0.02 3.82 16 44 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -61.61 377.40 5.47 -56.13 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.97 Total: 19.89 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 5.17 Total: -40.72 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.44 Total: -82.39 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.26 Total: 1.04 kcal Total: -61.61 5.47 -56.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231431373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.321 kcal (2) G-P(sol) polarization free energy of solvation -61.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds