Wall clock time and date at job start Tue Mar 31 2020 10:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47365 * 2 1 4 4 C 1.33393 * 125.20225 * 89.99515 * 3 2 1 5 5 C 1.38423 * 114.91908 * 179.79550 * 4 3 2 6 6 C 1.33389 * 114.92116 * 0.43298 * 5 4 3 7 7 C 1.50694 * 125.20412 * 179.86011 * 6 5 4 8 8 N 1.46898 * 109.47221 * 94.25182 * 7 6 5 9 9 C 1.46899 * 111.00028 * 287.58011 * 8 7 6 10 10 C 1.50701 * 109.47167 * 300.07607 * 9 8 7 11 11 H 1.08007 * 119.99532 * 4.00517 * 10 9 8 12 12 C 1.37871 * 120.00376 * 184.00589 * 10 9 8 13 13 N 1.31516 * 119.99835 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00133 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46969 * 90.00481 * 14 12 10 16 16 H 1.48504 * 109.46916 * 209.99676 * 14 12 10 17 17 H 1.48490 * 109.47196 * 329.99762 * 14 12 10 18 18 C 1.46900 * 110.99951 * 163.62472 * 8 7 6 19 19 C 1.50706 * 109.47222 * 190.00164 * 18 8 7 20 20 C 1.38241 * 119.99724 * 269.72865 * 19 18 8 21 21 C 1.38239 * 119.99644 * 179.76275 * 20 19 18 22 22 C 1.38234 * 119.99981 * 0.48703 * 21 20 19 23 23 C 1.38234 * 120.00181 * 359.78681 * 22 21 20 24 24 C 1.38235 * 120.00188 * 89.99866 * 19 18 8 25 25 S 1.75883 * 125.20230 * 270.02602 * 3 2 1 26 26 H 1.09006 * 109.47052 * 60.00019 * 1 2 3 27 27 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47546 * 300.00195 * 1 2 3 29 29 H 1.08996 * 109.47684 * 239.99682 * 2 1 3 30 30 H 1.09006 * 109.47052 * 119.99981 * 2 1 3 31 31 H 1.08003 * 122.53699 * 0.02592 * 4 3 2 32 32 H 1.07993 * 122.54242 * 180.26994 * 5 4 3 33 33 H 1.09000 * 109.46998 * 334.24936 * 7 6 5 34 34 H 1.09001 * 109.46979 * 214.25246 * 7 6 5 35 35 H 1.08993 * 109.47132 * 60.07626 * 9 8 7 36 36 H 1.08999 * 109.47127 * 180.02562 * 9 8 7 37 37 H 0.97000 * 119.99873 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.47357 * 70.00513 * 18 8 7 39 39 H 1.08998 * 109.47489 * 309.99448 * 18 8 7 40 40 H 1.07993 * 120.00124 * 359.97438 * 20 19 18 41 41 H 1.07996 * 119.99460 * 180.25088 * 21 20 19 42 42 H 1.08001 * 119.99578 * 179.77158 * 22 21 20 43 43 H 1.07997 * 120.00409 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.99772 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1459 1.0900 5 6 2.7469 3.4284 0.8429 6 6 2.8542 3.7481 -0.4477 7 6 3.3248 5.0782 -0.9770 8 7 4.7664 5.0137 -1.2516 9 6 5.5398 4.9934 -0.0029 10 6 5.2522 6.2445 0.7865 11 1 4.5158 6.9500 0.4308 12 6 5.9292 6.4886 1.9625 13 7 6.8263 5.6298 2.3952 14 14 5.5722 8.0392 2.9412 15 1 4.4830 7.7705 3.9142 16 1 6.7962 8.4565 3.6713 17 1 5.1537 9.1229 2.0164 18 6 5.1883 6.1254 -2.1142 19 6 6.6050 5.8952 -2.5736 20 6 7.6615 6.3842 -1.8281 21 6 8.9611 6.1688 -2.2470 22 6 9.2040 5.4731 -3.4166 23 6 8.1474 4.9890 -4.1650 24 6 6.8479 5.1999 -3.7434 25 16 2.3697 2.3770 -1.4372 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.1525 1.7600 2.0895 32 1 2.9961 4.1189 1.6349 33 1 3.1304 5.8535 -0.2360 34 1 2.7897 5.3129 -1.8973 35 1 5.2577 4.1201 0.5850 36 1 6.6037 4.9460 -0.2351 37 1 7.3029 5.8017 3.2224 38 1 5.1350 7.0596 -1.5551 39 1 4.5301 6.1827 -2.9811 40 1 7.4715 6.9316 -0.9167 41 1 9.7865 6.5473 -1.6624 42 1 10.2193 5.3080 -3.7457 43 1 8.3372 4.4458 -5.0789 44 1 6.0224 4.8220 -4.3283 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231500491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:39 Heat of formation + Delta-G solvation = 50.481794 kcal Electronic energy + Delta-G solvation = -23598.162190 eV Core-core repulsion = 20413.495874 eV Total energy + Delta-G solvation = -3184.666316 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.91754 -37.82632 -36.36983 -33.60864 -32.54843 -31.20963 -30.33254 -28.85860 -27.11824 -25.72066 -24.24455 -23.18519 -21.97732 -21.77123 -21.13587 -19.72379 -18.34423 -16.70162 -16.27336 -16.01769 -15.02215 -14.86094 -14.84194 -14.53697 -14.40693 -14.05181 -13.70316 -13.52652 -12.96644 -12.84596 -12.61854 -12.29632 -12.12850 -11.98292 -11.78876 -11.53842 -11.48126 -11.21144 -11.07148 -10.98037 -10.78805 -10.59187 -10.57189 -10.34951 -10.26985 -10.04492 -9.98576 -9.65044 -8.48048 -8.30907 -8.20626 -7.94914 -7.88870 -7.19638 -6.04681 -4.14043 1.49606 1.92032 1.98537 2.12761 2.54572 3.23223 3.31226 3.31589 3.33050 4.32609 4.36580 4.93232 5.11281 5.18639 5.25263 5.33875 5.37835 5.40724 5.52970 5.60582 5.63252 5.73057 5.80203 5.82684 5.89678 5.95234 6.08833 6.13340 6.17168 6.23622 6.30447 6.36687 6.49054 6.60307 6.69920 6.73562 6.93415 6.97029 7.08668 7.10480 7.26104 7.32553 7.54660 7.59710 7.91490 8.00768 8.22660 8.26995 8.96484 9.51887 10.99657 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.004927 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.386138 B = 5682.183599 C = 7776.049883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C -0.196 4.196 4 C -0.128 4.128 5 C -0.131 4.131 6 C -0.132 4.132 7 C 0.123 3.877 8 N -0.531 5.531 9 C 0.182 3.818 10 C -0.548 4.548 11 H 0.055 0.945 12 C 0.070 3.930 13 N -0.884 5.884 14 Si 0.881 3.119 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.097 3.903 19 C -0.059 4.059 20 C -0.089 4.089 21 C -0.127 4.127 22 C -0.131 4.131 23 C -0.134 4.134 24 C -0.108 4.108 25 S 0.079 5.921 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.096 -5.419 -8.467 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.313 4.313 4 C -0.159 4.159 5 C -0.161 4.161 6 C -0.249 4.249 7 C -0.007 4.007 8 N -0.254 5.254 9 C 0.057 3.943 10 C -0.587 4.587 11 H 0.073 0.927 12 C -0.133 4.133 13 N -0.522 5.522 14 Si 0.709 3.291 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.031 4.031 19 C -0.060 4.060 20 C -0.107 4.107 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.126 4.126 25 S 0.343 5.657 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.966 -6.146 -10.130 13.266 hybrid contribution 0.029 1.810 2.833 3.362 sum -5.937 -4.337 -7.297 10.359 Atomic orbital electron populations 1.21781 0.94899 1.01336 1.02339 1.19994 0.95662 0.90403 1.02642 1.24304 1.10471 1.00463 0.96090 1.20027 1.02732 0.94461 0.98670 1.20197 1.02282 0.96941 0.96684 1.24331 1.05806 0.99156 0.95647 1.20454 0.90187 0.90963 0.99107 1.62580 1.02118 1.41420 1.19329 1.19866 0.94083 0.96183 0.84187 1.21657 1.22541 1.07075 1.07408 0.92666 1.24888 0.94921 0.96164 0.97326 1.69954 1.24855 1.35407 1.22025 0.86779 0.77863 0.84001 0.80506 1.20691 1.21206 1.19977 1.20902 0.91622 0.94673 0.95917 1.19782 0.95411 0.96726 0.94052 1.21356 0.91893 0.98529 0.98948 1.21107 0.96979 0.99858 0.96549 1.20999 0.98341 0.99702 0.95912 1.20968 0.92994 1.01311 0.99948 1.20950 0.96324 0.98605 0.96749 1.83904 1.65327 1.06374 1.10103 0.92606 0.92573 0.92440 0.91291 0.90562 0.85261 0.83916 0.91227 0.92132 0.94991 0.94019 0.92854 0.92816 0.92268 0.84897 0.86759 0.87093 0.87014 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.15 0.37 -1.08 16 2 C -0.05 -0.55 6.43 -27.88 -0.18 -0.73 16 3 C -0.20 -2.94 5.76 -36.00 -0.21 -3.15 16 4 C -0.13 -2.09 10.05 -41.21 -0.41 -2.51 16 5 C -0.13 -2.45 9.07 -41.21 -0.37 -2.83 16 6 C -0.13 -2.43 5.51 -36.01 -0.20 -2.62 16 7 C 0.12 2.31 5.30 -4.98 -0.03 2.28 16 8 N -0.53 -10.93 4.64 -238.97 -1.11 -12.04 16 9 C 0.18 4.46 4.63 -4.98 -0.02 4.44 16 10 C -0.55 -13.92 7.25 -34.44 -0.25 -14.17 16 11 H 0.06 1.39 5.95 -52.48 -0.31 1.08 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.88 -24.93 13.29 55.43 0.74 -24.19 16 14 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 18 C 0.10 1.81 4.94 -4.97 -0.02 1.79 16 19 C -0.06 -1.10 4.88 -104.62 -0.51 -1.61 16 20 C -0.09 -1.73 7.92 -39.58 -0.31 -2.04 16 21 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 23 C -0.13 -2.04 10.05 -39.58 -0.40 -2.44 16 24 C -0.11 -1.79 9.70 -39.58 -0.38 -2.17 16 25 S 0.08 1.26 23.31 -107.50 -2.51 -1.25 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.14 2.89 8.06 -52.49 -0.42 2.47 16 33 H 0.07 1.42 6.08 -51.93 -0.32 1.10 16 34 H 0.06 1.01 7.80 -51.93 -0.41 0.60 16 35 H 0.03 0.87 6.76 -51.93 -0.35 0.52 16 36 H 0.04 1.12 5.91 -51.93 -0.31 0.82 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 38 H 0.05 1.08 6.59 -51.93 -0.34 0.74 16 39 H 0.06 0.97 7.80 -51.93 -0.41 0.57 16 40 H 0.13 2.87 7.92 -52.49 -0.42 2.46 16 41 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -27.88 371.20 -12.77 -40.65 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.64 Total: 5.80 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: -3.83 Total: -30.09 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.37 Total: -36.23 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.88 -12.77 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231500491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.135 kcal (2) G-P(sol) polarization free energy of solvation -27.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds