Wall clock time and date at job start Tue Mar 31 2020 10:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.47365 * 2 1 4 4 C 1.33393 * 125.20225 * 89.99515 * 3 2 1 5 5 C 1.38423 * 114.91908 * 179.79550 * 4 3 2 6 6 C 1.33389 * 114.92116 * 0.43298 * 5 4 3 7 7 C 1.50694 * 125.20412 * 179.86011 * 6 5 4 8 8 N 1.46898 * 109.47221 * 94.25182 * 7 6 5 9 9 C 1.46899 * 111.00028 * 287.58011 * 8 7 6 10 10 C 1.50701 * 109.47167 * 300.07607 * 9 8 7 11 11 H 1.08007 * 119.99532 * 4.00517 * 10 9 8 12 12 C 1.37871 * 120.00376 * 184.00589 * 10 9 8 13 13 N 1.31516 * 119.99835 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00133 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46969 * 90.00481 * 14 12 10 16 16 H 1.48504 * 109.46916 * 209.99676 * 14 12 10 17 17 H 1.48490 * 109.47196 * 329.99762 * 14 12 10 18 18 C 1.46900 * 110.99951 * 163.62472 * 8 7 6 19 19 C 1.50706 * 109.47222 * 190.00164 * 18 8 7 20 20 C 1.38241 * 119.99724 * 269.72865 * 19 18 8 21 21 C 1.38239 * 119.99644 * 179.76275 * 20 19 18 22 22 C 1.38234 * 119.99981 * 0.48703 * 21 20 19 23 23 C 1.38234 * 120.00181 * 359.78681 * 22 21 20 24 24 C 1.38235 * 120.00188 * 89.99866 * 19 18 8 25 25 S 1.75883 * 125.20230 * 270.02602 * 3 2 1 26 26 H 1.09006 * 109.47052 * 60.00019 * 1 2 3 27 27 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47546 * 300.00195 * 1 2 3 29 29 H 1.08996 * 109.47684 * 239.99682 * 2 1 3 30 30 H 1.09006 * 109.47052 * 119.99981 * 2 1 3 31 31 H 1.08003 * 122.53699 * 0.02592 * 4 3 2 32 32 H 1.07993 * 122.54242 * 180.26994 * 5 4 3 33 33 H 1.09000 * 109.46998 * 334.24936 * 7 6 5 34 34 H 1.09001 * 109.46979 * 214.25246 * 7 6 5 35 35 H 1.08993 * 109.47132 * 60.07626 * 9 8 7 36 36 H 1.08999 * 109.47127 * 180.02562 * 9 8 7 37 37 H 0.97000 * 119.99873 * 179.97438 * 13 12 10 38 38 H 1.08998 * 109.47357 * 70.00513 * 18 8 7 39 39 H 1.08998 * 109.47489 * 309.99448 * 18 8 7 40 40 H 1.07993 * 120.00124 * 359.97438 * 20 19 18 41 41 H 1.07996 * 119.99460 * 180.25088 * 21 20 19 42 42 H 1.08001 * 119.99578 * 179.77158 * 22 21 20 43 43 H 1.07997 * 120.00409 * 179.97438 * 23 22 21 44 44 H 1.07996 * 119.99772 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1459 1.0900 5 6 2.7469 3.4284 0.8429 6 6 2.8542 3.7481 -0.4477 7 6 3.3248 5.0782 -0.9770 8 7 4.7664 5.0137 -1.2516 9 6 5.5398 4.9934 -0.0029 10 6 5.2522 6.2445 0.7865 11 1 4.5158 6.9500 0.4308 12 6 5.9292 6.4886 1.9625 13 7 6.8263 5.6298 2.3952 14 14 5.5722 8.0392 2.9412 15 1 4.4830 7.7705 3.9142 16 1 6.7962 8.4565 3.6713 17 1 5.1537 9.1229 2.0164 18 6 5.1883 6.1254 -2.1142 19 6 6.6050 5.8952 -2.5736 20 6 7.6615 6.3842 -1.8281 21 6 8.9611 6.1688 -2.2470 22 6 9.2040 5.4731 -3.4166 23 6 8.1474 4.9890 -4.1650 24 6 6.8479 5.1999 -3.7434 25 16 2.3697 2.3770 -1.4372 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 2.1525 1.7600 2.0895 32 1 2.9961 4.1189 1.6349 33 1 3.1304 5.8535 -0.2360 34 1 2.7897 5.3129 -1.8973 35 1 5.2577 4.1201 0.5850 36 1 6.6037 4.9460 -0.2351 37 1 7.3029 5.8017 3.2224 38 1 5.1350 7.0596 -1.5551 39 1 4.5301 6.1827 -2.9811 40 1 7.4715 6.9316 -0.9167 41 1 9.7865 6.5473 -1.6624 42 1 10.2193 5.3080 -3.7457 43 1 8.3372 4.4458 -5.0789 44 1 6.0224 4.8220 -4.3283 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231500491.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:38 Heat of formation + Delta-G solvation = 37.839748 kcal Electronic energy + Delta-G solvation = -23598.710390 eV Core-core repulsion = 20413.495874 eV Total energy + Delta-G solvation = -3185.214516 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33434 -39.18723 -37.87037 -34.80322 -34.47767 -32.55894 -31.65936 -30.30369 -28.91792 -26.99522 -26.00356 -24.56476 -23.29470 -22.94991 -22.59868 -21.33207 -19.73339 -18.49519 -17.71607 -17.37694 -16.73329 -16.46091 -16.21692 -16.02843 -15.86202 -15.24275 -15.02480 -14.73424 -14.53702 -14.17692 -13.94243 -13.79241 -13.54460 -13.35972 -13.15387 -13.02615 -12.80376 -12.72737 -12.68886 -12.42242 -12.33853 -12.05631 -12.02909 -11.78761 -11.72681 -11.62303 -11.55646 -11.46447 -10.56557 -9.65606 -9.58633 -9.26465 -9.21490 -8.94921 -8.10583 -6.27645 0.16100 0.59672 0.65092 0.83347 1.19739 1.33500 1.35727 1.43836 1.92706 2.37028 2.96867 3.15102 3.61631 3.89839 4.04831 4.10386 4.17669 4.25843 4.28230 4.34481 4.41234 4.48555 4.55629 4.63520 4.74513 4.79475 4.81616 4.88172 4.96438 4.97368 5.05056 5.13061 5.24891 5.31197 5.33934 5.38724 5.39647 5.43184 5.56443 5.68949 5.73170 5.74963 5.82511 5.91448 6.10425 6.26368 6.28407 6.50903 6.92215 7.41776 8.91513 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.004927 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.386138 B = 5682.183599 C = 7776.049883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.180 4.180 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.162 4.162 7 C 0.126 3.874 8 N -0.528 5.528 9 C 0.207 3.793 10 C -0.540 4.540 11 H 0.054 0.946 12 C 0.022 3.978 13 N -0.921 5.921 14 Si 0.941 3.059 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.099 3.901 19 C -0.079 4.079 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.127 4.127 23 C -0.127 4.127 24 C -0.111 4.111 25 S 0.113 5.887 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.087 0.913 35 H -0.002 1.002 36 H 0.014 0.986 37 H 0.261 0.739 38 H 0.031 0.969 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.145 0.855 43 H 0.150 0.850 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -6.869 -10.777 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.298 4.298 4 C -0.180 4.180 5 C -0.175 4.175 6 C -0.279 4.279 7 C -0.004 4.004 8 N -0.251 5.251 9 C 0.081 3.919 10 C -0.579 4.579 11 H 0.072 0.928 12 C -0.178 4.178 13 N -0.561 5.561 14 Si 0.767 3.233 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.028 4.028 19 C -0.079 4.079 20 C -0.135 4.135 21 C -0.157 4.157 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.129 4.129 25 S 0.377 5.623 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.162 0.838 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.017 0.983 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.694 -7.582 -12.455 16.044 hybrid contribution 0.249 2.184 3.465 4.104 sum -6.446 -5.398 -8.989 12.308 Atomic orbital electron populations 1.21758 0.93339 1.02844 1.02039 1.20184 0.96898 0.87978 1.03868 1.24819 1.08101 1.01744 0.95145 1.20103 1.04048 0.93766 1.00083 1.20171 1.03162 0.97798 0.96322 1.24348 1.07017 1.00248 0.96303 1.20437 0.89196 0.91047 0.99692 1.62501 1.02803 1.42418 1.17422 1.19352 0.92907 0.94290 0.85378 1.21824 1.21713 1.07146 1.07262 0.92755 1.25593 0.94852 0.98879 0.98453 1.70076 1.26165 1.37298 1.22557 0.85814 0.77579 0.80757 0.79120 1.20333 1.21088 1.19271 1.20941 0.92912 0.92837 0.96129 1.19829 0.94721 0.98089 0.95273 1.21182 0.93705 1.00151 0.98464 1.21297 0.96177 1.00478 0.97795 1.21389 1.00332 0.98106 0.94637 1.21423 0.92082 1.00193 1.00797 1.21213 0.97972 0.97857 0.95876 1.83655 1.64431 1.04667 1.09500 0.92851 0.90199 0.92845 0.90062 0.89330 0.83839 0.86921 0.93544 0.89453 0.98346 0.96754 0.92983 0.95105 0.89260 0.88685 0.86013 0.83707 0.83240 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.89 71.98 0.71 -1.70 16 2 C -0.05 -1.02 6.43 29.85 0.19 -0.83 16 3 C -0.18 -5.16 5.76 24.59 0.14 -5.01 16 4 C -0.15 -4.92 10.05 21.22 0.21 -4.71 16 5 C -0.14 -5.63 9.07 21.22 0.19 -5.44 16 6 C -0.16 -6.06 5.51 24.59 0.14 -5.92 16 7 C 0.13 4.84 5.30 85.56 0.45 5.30 16 8 N -0.53 -22.38 4.64 -909.97 -4.23 -26.61 16 9 C 0.21 10.75 4.63 85.56 0.40 11.15 16 10 C -0.54 -29.00 7.25 25.60 0.19 -28.82 16 11 H 0.05 2.88 5.95 -2.91 -0.02 2.86 16 12 C 0.02 1.21 5.46 84.65 0.46 1.67 16 13 N -0.92 -54.50 13.29 21.45 0.28 -54.22 16 14 Si 0.94 43.79 29.54 68.60 2.03 45.81 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.10 3.79 4.94 85.56 0.42 4.21 16 19 C -0.08 -2.96 4.88 -19.86 -0.10 -3.06 16 20 C -0.12 -4.74 7.92 22.27 0.18 -4.57 16 21 C -0.14 -4.84 10.05 22.27 0.22 -4.61 16 22 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 24 C -0.11 -3.45 9.70 22.27 0.22 -3.24 16 25 S 0.11 3.45 23.31 -56.49 -1.32 2.13 16 26 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 32 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 33 H 0.05 1.99 6.08 -2.39 -0.01 1.97 16 34 H 0.09 2.84 7.80 -2.39 -0.02 2.82 16 35 H 0.00 -0.09 6.76 -2.39 -0.02 -0.11 16 36 H 0.01 0.82 5.91 -2.39 -0.01 0.81 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.03 1.30 6.59 -2.39 -0.02 1.29 16 39 H 0.09 2.83 7.80 -2.39 -0.02 2.81 16 40 H 0.09 4.50 7.92 -2.91 -0.02 4.48 16 41 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 42 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 43 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -63.67 371.20 2.22 -61.46 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.97 Total: 23.60 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 4.47 Total: -52.18 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -3.94 Total: -80.82 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.32 Total: 2.13 kcal Total: -63.67 2.22 -61.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231500491.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.295 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds