Wall clock time and date at job start Tue Mar 31 2020 10:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36597 * 126.57588 * 2 1 4 4 C 1.47526 * 125.77103 * 359.97438 * 3 2 1 5 5 O 1.21592 * 120.00264 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99808 * 179.97438 * 4 3 2 7 7 C 1.46506 * 120.00072 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47289 * 180.02562 * 7 6 4 9 9 C 1.50696 * 109.47242 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99967 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00542 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99408 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00405 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46879 * 59.99995 * 13 11 9 15 15 H 1.48503 * 109.47086 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47288 * 300.00002 * 13 11 9 17 17 N 1.34407 * 108.45824 * 180.24467 * 3 2 1 18 18 N 1.28756 * 109.51856 * 359.59011 * 17 3 2 19 19 N 1.34807 * 126.58584 * 180.02562 * 2 1 3 20 20 C 1.46504 * 126.59139 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.47475 * 90.00262 * 20 19 2 22 22 C 1.38651 * 120.78600 * 269.71914 * 21 20 19 23 23 C 1.38204 * 119.15833 * 179.79696 * 22 21 20 24 24 N 1.31869 * 120.76636 * 0.48060 * 23 22 21 25 25 C 1.31874 * 121.72313 * 359.75076 * 24 23 22 26 26 C 1.38202 * 120.76519 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47098 * 89.97335 * 1 2 3 28 28 H 1.09006 * 109.46587 * 209.97171 * 1 2 3 29 29 H 1.08995 * 109.46964 * 329.96858 * 1 2 3 30 30 H 0.97001 * 120.00676 * 359.97438 * 6 4 3 31 31 H 1.09001 * 109.47060 * 300.00359 * 7 6 4 32 32 H 1.09004 * 109.47073 * 59.99848 * 7 6 4 33 33 H 1.09001 * 109.46832 * 299.99854 * 8 7 6 34 34 H 1.08996 * 109.46952 * 59.99873 * 8 7 6 35 35 H 0.96999 * 119.99910 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.46932 * 210.00457 * 20 19 2 37 37 H 1.09000 * 109.47179 * 329.99479 * 20 19 2 38 38 H 1.08000 * 120.41952 * 0.02562 * 22 21 20 39 39 H 1.07999 * 119.61362 * 180.21075 * 23 22 21 40 40 H 1.08001 * 119.61755 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.41573 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8736 2.5028 -0.0005 5 8 0.6858 2.7628 -0.0015 6 7 2.7815 3.4988 0.0000 7 6 2.3373 4.8949 0.0001 8 6 3.5572 5.8183 0.0002 9 6 3.1003 7.2543 0.0008 10 1 2.0452 7.4853 0.0007 11 6 4.0290 8.2734 0.0015 12 7 5.3137 7.9921 0.0011 13 14 3.4625 10.0534 0.0016 14 1 2.6447 10.3125 1.2138 15 1 4.6466 10.9497 0.0018 16 1 2.6460 10.3131 -1.2112 17 7 3.5984 0.6790 -0.0054 18 7 3.6299 -0.6082 -0.0001 19 7 2.3105 -1.0824 -0.0005 20 6 1.8865 -2.4848 -0.0006 21 6 1.7407 -2.9655 -1.4214 22 6 0.5302 -2.8524 -2.0881 23 6 0.4353 -3.3003 -3.3921 24 7 1.4757 -3.8383 -3.9980 25 6 2.6407 -3.9661 -3.3933 26 6 2.8120 -3.5367 -2.0909 27 1 -0.3633 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 3.7291 3.2915 0.0012 31 1 1.7378 5.0855 -0.8901 32 1 1.7370 5.0852 0.8898 33 1 4.1570 5.6278 0.8902 34 1 4.1570 5.6279 -0.8898 35 1 5.9671 8.7090 0.0012 36 1 2.6335 -3.0902 0.5130 37 1 0.9297 -2.5751 0.5137 38 1 -0.3265 -2.4163 -1.5959 39 1 -0.5031 -3.2127 -3.9195 40 1 3.4702 -4.4123 -3.9217 41 1 3.7687 -3.6437 -1.6012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261085768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:16 Heat of formation + Delta-G solvation = 84.007359 kcal Electronic energy + Delta-G solvation = -24694.929992 eV Core-core repulsion = 20997.716990 eV Total energy + Delta-G solvation = -3697.213001 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.41769 -40.65019 -38.91538 -36.00630 -34.91240 -33.28104 -32.77050 -32.07038 -31.72961 -29.81917 -28.08288 -27.65287 -24.94666 -24.07809 -23.38892 -22.99003 -21.21231 -20.70334 -20.19350 -18.07092 -17.41895 -16.95766 -16.41074 -16.33461 -16.07475 -15.78961 -15.19140 -14.71346 -14.48548 -14.43686 -14.26244 -14.21555 -13.76328 -13.64626 -13.25478 -13.21119 -12.91779 -12.88201 -12.26102 -12.08403 -12.00569 -11.27934 -11.17031 -10.99619 -10.64313 -10.62475 -10.36693 -10.28731 -9.97542 -9.90907 -9.69216 -9.50004 -9.23300 -9.21335 -8.50087 -8.30924 -6.04690 -4.07907 0.42668 0.59533 0.99618 1.77199 1.90800 3.29157 3.33863 3.37706 3.40072 3.54163 3.57138 3.76542 3.86228 3.96222 4.07494 4.38854 4.41275 4.45061 4.47069 4.59229 4.64176 4.76841 5.04029 5.05778 5.20754 5.24486 5.31922 5.33462 5.42429 5.60761 5.67270 5.84158 6.11646 6.20630 6.36556 6.37164 6.76052 6.91519 7.43576 7.56313 7.67284 7.79392 7.93425 8.08665 8.31062 8.59623 8.97830 9.56463 11.06872 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.024896 B = 0.002258 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.393569 B =12398.335617 C =12502.341315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.122 3.878 3 C -0.096 4.096 4 C 0.594 3.406 5 O -0.548 6.548 6 N -0.703 5.703 7 C 0.122 3.878 8 C 0.011 3.989 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.197 5.197 18 N -0.067 5.067 19 N -0.365 5.365 20 C 0.164 3.836 21 C -0.077 4.077 22 C -0.153 4.153 23 C 0.100 3.900 24 N -0.477 5.477 25 C 0.100 3.900 26 C -0.143 4.143 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.406 0.594 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -28.202 -1.484 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.015 4.015 3 C -0.235 4.235 4 C 0.378 3.622 5 O -0.426 6.426 6 N -0.352 5.352 7 C 0.000 4.000 8 C -0.026 4.026 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.201 1.201 17 N -0.070 5.070 18 N -0.046 5.046 19 N -0.151 5.151 20 C 0.043 3.957 21 C -0.086 4.086 22 C -0.173 4.173 23 C -0.057 4.057 24 N -0.185 5.185 25 C -0.057 4.057 26 C -0.164 4.164 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.241 0.759 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.178 0.822 40 H 0.178 0.822 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.547 -28.589 -2.329 29.930 hybrid contribution -0.496 1.246 0.847 1.587 sum -9.043 -27.342 -1.482 28.837 Atomic orbital electron populations 1.20752 0.84810 1.05341 1.04548 1.21893 0.96183 0.86270 0.97123 1.21456 0.88768 0.95920 1.17373 1.16762 0.85892 0.82368 0.77220 1.90725 1.15950 1.83609 1.52354 1.46173 1.09982 1.07164 1.71868 1.21800 0.99937 0.77270 1.00957 1.19332 0.91826 0.93358 0.98084 1.20999 0.93131 0.90395 1.51538 0.92273 1.25003 0.94858 0.99412 0.95043 1.69954 1.00295 1.32742 1.50188 0.86571 0.78028 0.84180 0.78729 1.20126 1.21275 1.20134 1.74640 1.19186 1.03872 1.09304 1.81978 0.95730 1.03610 1.23300 1.50330 1.06658 1.06509 1.51621 1.20754 1.03575 0.77301 0.94044 1.20291 0.94446 0.98044 0.95818 1.22151 0.98026 1.00561 0.96580 1.22843 0.97568 0.93462 0.91819 1.67712 0.99966 1.12951 1.37919 1.22866 0.95116 0.95820 0.91882 1.22162 0.99428 0.98413 0.96349 0.89108 0.90948 0.86639 0.75944 0.92272 0.92245 0.95792 0.95801 0.92787 0.86291 0.86777 0.84318 0.82220 0.82226 0.84086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 9.57 36.01 0.34 -0.46 16 2 C 0.12 1.44 7.02 -81.88 -0.57 0.86 16 3 C -0.10 -1.49 6.99 -83.55 -0.58 -2.07 16 4 C 0.59 10.73 7.82 -12.48 -0.10 10.63 16 5 O -0.55 -10.60 14.72 5.28 0.08 -10.53 16 6 N -0.70 -13.44 5.55 -61.35 -0.34 -13.78 16 7 C 0.12 2.65 5.61 -4.04 -0.02 2.63 16 8 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 9 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 10 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 13 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 N -0.20 -3.14 12.04 32.85 0.40 -2.75 16 18 N -0.07 -0.92 13.78 60.35 0.83 -0.09 16 19 N -0.36 -3.76 3.62 -58.02 -0.21 -3.97 16 20 C 0.16 0.93 6.48 -5.19 -0.03 0.89 16 21 C -0.08 -0.50 5.50 -104.32 -0.57 -1.07 16 22 C -0.15 -0.92 9.82 -39.44 -0.39 -1.30 16 23 C 0.10 0.71 11.18 -17.55 -0.20 0.51 16 24 N -0.48 -4.29 10.36 -13.25 -0.14 -4.43 16 25 C 0.10 0.75 11.18 -17.55 -0.20 0.55 16 26 C -0.14 -0.97 9.82 -39.44 -0.39 -1.36 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.34 7.18 -51.93 -0.37 -0.04 16 29 H 0.12 1.22 6.43 -51.93 -0.33 0.88 16 30 H 0.41 7.43 8.16 -40.82 -0.33 7.10 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 0.48 8.10 -51.93 -0.42 0.06 16 37 H 0.11 0.32 7.12 -51.93 -0.37 -0.05 16 38 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 39 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -34.99 360.84 -6.67 -41.66 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.18 Total: 1.13 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -3.26 Total: -3.40 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 1.28 Total: -50.85 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.99 -6.67 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261085768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.669 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds