Wall clock time and date at job start Tue Mar 31 2020 11:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 N 1.46493 * 109.47187 * 120.00409 * 2 1 3 5 5 N 1.28945 * 126.47682 * 299.96802 * 4 2 1 6 6 N 1.28577 * 109.62346 * 179.77063 * 5 4 2 7 7 C 1.33356 * 109.89610 * 0.41871 * 6 5 4 8 8 N 1.39896 * 126.25783 * 179.85270 * 7 6 5 9 9 C 1.34780 * 119.99534 * 359.68670 * 8 7 6 10 10 O 1.21287 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00166 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47059 * 59.99971 * 11 9 8 13 13 C 1.50707 * 109.47164 * 300.00516 * 11 9 8 14 14 H 1.07999 * 119.99967 * 333.16877 * 13 11 9 15 15 C 1.37878 * 120.00083 * 153.16518 * 13 11 9 16 16 N 1.31513 * 119.99720 * 6.15240 * 15 13 11 17 17 Si 1.86797 * 119.99841 * 186.43086 * 15 13 11 18 18 H 1.48507 * 109.46896 * 179.72382 * 17 15 13 19 19 H 1.48504 * 109.47080 * 299.72193 * 17 15 13 20 20 H 1.48491 * 109.47334 * 59.72326 * 17 15 13 21 21 C 1.50694 * 109.47604 * 180.02562 * 11 9 8 22 22 C 1.38240 * 119.99847 * 66.38847 * 21 11 9 23 23 C 1.38242 * 119.99595 * 179.79084 * 22 21 11 24 24 C 1.38228 * 120.00092 * 0.44374 * 23 22 21 25 25 C 1.38239 * 120.00401 * 359.81466 * 24 23 22 26 26 C 1.38227 * 120.00134 * 246.67038 * 21 11 9 27 27 N 1.31655 * 107.49410 * 359.59259 * 7 6 5 28 28 H 1.08997 * 109.46547 * 299.99293 * 1 2 3 29 29 H 1.08990 * 109.47173 * 59.99809 * 1 2 3 30 30 H 1.08995 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46952 * 240.00763 * 2 1 3 32 32 H 1.09001 * 109.46689 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47413 * 300.00004 * 3 2 1 34 34 H 1.08997 * 109.46990 * 60.00979 * 3 2 1 35 35 H 0.96994 * 120.00312 * 179.69418 * 8 7 6 36 36 H 0.97003 * 119.99932 * 355.80255 * 16 15 13 37 37 H 1.07996 * 120.00067 * 0.02562 * 22 21 11 38 38 H 1.07998 * 119.99365 * 180.27890 * 23 22 21 39 39 H 1.07997 * 120.00149 * 179.83244 * 24 23 22 40 40 H 1.07991 * 120.00263 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00359 * 359.97407 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7856 -0.3606 2.4206 6 7 2.3674 -1.1921 3.2101 7 6 3.0229 -2.1103 2.4990 8 7 3.7741 -3.1731 3.0121 9 6 3.8893 -3.3350 4.3452 10 8 3.3413 -2.5595 5.0999 11 6 4.6980 -4.4801 4.8981 12 1 5.7285 -4.3972 4.5529 13 6 4.1123 -5.7846 4.4221 14 1 3.0631 -5.8468 4.1738 15 6 4.9160 -6.8987 4.3036 16 7 6.1630 -6.8570 4.7192 17 14 4.2358 -8.4646 3.5456 18 1 5.2943 -9.5061 3.5277 19 1 3.0833 -8.9439 4.3502 20 1 3.7893 -8.1888 2.1566 21 6 4.6671 -4.4360 6.4041 22 6 3.4805 -4.6570 7.0778 23 6 3.4531 -4.6207 8.4595 24 6 4.6104 -4.3544 9.1670 25 6 5.7960 -4.1281 8.4931 26 6 5.8242 -4.1687 7.1115 27 7 2.8292 -1.8373 1.2257 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 4.2120 -3.7934 2.4086 36 1 6.5356 -6.0258 5.0528 37 1 2.5756 -4.8617 6.5250 38 1 2.5269 -4.7979 8.9860 39 1 4.5884 -4.3235 10.2463 40 1 6.7000 -3.9197 9.0458 41 1 6.7504 -3.9919 6.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361929987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:16 Heat of formation + Delta-G solvation = 117.348389 kcal Electronic energy + Delta-G solvation = -25716.489658 eV Core-core repulsion = 22020.722432 eV Total energy + Delta-G solvation = -3695.767226 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.87807 -39.54231 -37.99895 -36.55781 -34.48785 -34.08397 -32.10389 -31.07830 -30.68817 -30.06013 -27.74827 -27.39057 -24.80552 -24.01852 -22.86185 -21.72350 -21.63971 -20.59781 -19.41894 -17.56716 -17.50079 -16.96969 -16.57658 -15.94317 -15.80562 -14.81242 -14.65822 -14.29600 -13.99931 -13.88472 -13.60846 -13.49073 -13.19127 -12.95350 -12.73389 -12.62013 -12.38062 -12.26467 -12.13254 -11.92603 -11.64674 -11.31513 -11.21524 -11.03144 -10.89995 -10.45682 -10.36194 -10.24885 -10.23470 -10.19518 -9.15092 -9.02025 -8.71315 -8.66562 -8.05751 -7.72974 -6.65209 -4.42791 1.19098 1.72666 2.24279 2.28941 2.48274 3.10531 3.32328 3.33939 3.52544 3.57667 4.07077 4.34300 4.40420 4.58409 4.62423 4.75790 5.04183 5.08961 5.09755 5.10772 5.28740 5.40715 5.62435 5.63603 5.66963 5.71582 5.78176 5.86384 5.94064 6.01258 6.33377 6.39162 6.39630 6.51402 6.75601 6.81411 6.92222 7.25353 7.30878 7.47516 7.64193 7.73529 7.90735 8.10927 8.50534 8.59397 8.80389 9.29636 10.73651 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.003943 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.520605 B = 7098.838664 C = 8538.052748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.163 3.837 3 C -0.165 4.165 4 N -0.206 5.206 5 N 0.002 4.998 6 N -0.287 5.287 7 C 0.432 3.568 8 N -0.617 5.617 9 C 0.531 3.469 10 O -0.497 6.497 11 C 0.054 3.946 12 H 0.072 0.928 13 C -0.602 4.602 14 H 0.060 0.940 15 C 0.036 3.964 16 N -0.888 5.888 17 Si 1.069 2.931 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.024 4.024 22 C -0.077 4.077 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.124 4.124 27 N -0.341 5.341 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.432 0.568 36 H 0.274 0.726 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.906 10.661 -8.215 14.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 C -0.224 4.224 4 N -0.121 5.121 5 N 0.007 4.993 6 N -0.167 5.167 7 C 0.061 3.939 8 N -0.273 5.273 9 C 0.320 3.680 10 O -0.366 6.366 11 C 0.032 3.968 12 H 0.089 0.911 13 C -0.639 4.639 14 H 0.079 0.921 15 C -0.173 4.173 16 N -0.521 5.521 17 Si 0.896 3.104 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.210 1.210 21 C -0.026 4.026 22 C -0.095 4.095 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.142 4.142 27 N -0.191 5.191 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.271 0.729 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.199 10.067 -7.978 14.262 hybrid contribution 0.133 0.726 -0.052 0.740 sum -6.066 10.793 -8.030 14.757 Atomic orbital electron populations 1.22231 0.92056 1.03838 1.04267 1.21642 0.95665 0.93241 0.83253 1.22230 1.02457 0.93392 1.04280 1.53478 1.33840 1.18250 1.06559 1.78364 1.13939 1.18243 0.88772 1.75733 1.13197 1.03544 1.24262 1.21945 0.93587 0.91569 0.86822 1.43182 1.49493 1.25261 1.09405 1.21963 0.80688 0.85918 0.79475 1.90746 1.45179 1.44157 1.56513 1.18132 0.96967 0.92312 0.89361 0.91050 1.21561 0.97804 0.93990 1.50573 0.92129 1.25884 0.94796 1.02305 0.94268 1.70805 1.14871 1.29767 1.36655 0.83521 0.75582 0.75079 0.76229 1.20521 1.21167 1.21041 1.19993 0.92741 0.93895 0.95920 1.20808 0.97974 0.97397 0.93292 1.20988 0.97609 1.01856 0.94489 1.20848 0.93352 1.03171 0.98688 1.20888 0.97361 1.02046 0.94375 1.20951 0.97895 1.01371 0.93990 1.78839 1.18885 1.04719 1.16687 0.90649 0.89471 0.91443 0.86380 0.91499 0.89474 0.90644 0.72905 0.91432 0.86888 0.87284 0.87420 0.87287 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 9.41 37.16 0.35 -0.84 16 2 C 0.16 1.46 3.97 -67.93 -0.27 1.19 16 3 C -0.16 -1.16 9.41 37.16 0.35 -0.81 16 4 N -0.21 -3.01 4.06 -4.89 -0.02 -3.03 16 5 N 0.00 0.04 12.99 60.35 0.78 0.82 16 6 N -0.29 -5.96 10.56 30.07 0.32 -5.64 16 7 C 0.43 8.50 8.97 -320.56 -2.88 5.62 16 8 N -0.62 -12.27 5.34 -12.77 -0.07 -12.33 16 9 C 0.53 11.95 7.01 -10.98 -0.08 11.87 16 10 O -0.50 -12.34 14.16 5.55 0.08 -12.26 16 11 C 0.05 1.24 1.94 -94.07 -0.18 1.06 16 12 H 0.07 1.66 6.63 -51.93 -0.34 1.32 16 13 C -0.60 -14.82 7.45 -34.44 -0.26 -15.07 16 14 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.04 0.90 5.45 -17.82 -0.10 0.80 16 16 N -0.89 -23.86 13.63 55.43 0.76 -23.10 16 17 Si 1.07 22.90 29.91 -169.99 -5.08 17.81 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 C -0.02 -0.56 4.17 -104.63 -0.44 -1.00 16 22 C -0.08 -1.73 8.32 -39.58 -0.33 -2.06 16 23 C -0.13 -2.60 10.05 -39.58 -0.40 -3.00 16 24 C -0.14 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.13 -2.45 10.05 -39.58 -0.40 -2.85 16 26 C -0.12 -2.64 9.51 -39.58 -0.38 -3.02 16 27 N -0.34 -5.85 12.79 30.07 0.38 -5.46 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.43 7.72 8.71 -40.82 -0.36 7.37 16 36 H 0.27 7.25 6.49 -40.82 -0.26 6.99 16 37 H 0.11 2.62 7.88 -52.49 -0.41 2.20 16 38 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.11 2.19 7.96 -52.49 -0.42 1.77 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -31.89 357.14 -8.09 -39.98 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.23 Total: 8.98 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -5.39 Total: -11.14 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 2.15 Total: -48.75 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.08 Total: 17.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.89 -8.09 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361929987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.327 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds