Wall clock time and date at job start Tue Mar 31 2020 11:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 N 1.46493 * 109.47187 * 120.00409 * 2 1 3 5 5 N 1.28945 * 126.47682 * 299.96802 * 4 2 1 6 6 N 1.28577 * 109.62346 * 179.77063 * 5 4 2 7 7 C 1.33356 * 109.89610 * 0.41871 * 6 5 4 8 8 N 1.39896 * 126.25783 * 179.85270 * 7 6 5 9 9 C 1.34780 * 119.99534 * 359.68670 * 8 7 6 10 10 O 1.21287 * 120.00145 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00166 * 179.97438 * 9 8 7 12 12 H 1.08997 * 109.47059 * 59.99971 * 11 9 8 13 13 C 1.50707 * 109.47164 * 300.00516 * 11 9 8 14 14 H 1.07999 * 119.99967 * 333.16877 * 13 11 9 15 15 C 1.37878 * 120.00083 * 153.16518 * 13 11 9 16 16 N 1.31513 * 119.99720 * 6.15240 * 15 13 11 17 17 Si 1.86797 * 119.99841 * 186.43086 * 15 13 11 18 18 H 1.48507 * 109.46896 * 179.72382 * 17 15 13 19 19 H 1.48504 * 109.47080 * 299.72193 * 17 15 13 20 20 H 1.48491 * 109.47334 * 59.72326 * 17 15 13 21 21 C 1.50694 * 109.47604 * 180.02562 * 11 9 8 22 22 C 1.38240 * 119.99847 * 66.38847 * 21 11 9 23 23 C 1.38242 * 119.99595 * 179.79084 * 22 21 11 24 24 C 1.38228 * 120.00092 * 0.44374 * 23 22 21 25 25 C 1.38239 * 120.00401 * 359.81466 * 24 23 22 26 26 C 1.38227 * 120.00134 * 246.67038 * 21 11 9 27 27 N 1.31655 * 107.49410 * 359.59259 * 7 6 5 28 28 H 1.08997 * 109.46547 * 299.99293 * 1 2 3 29 29 H 1.08990 * 109.47173 * 59.99809 * 1 2 3 30 30 H 1.08995 * 109.47199 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46952 * 240.00763 * 2 1 3 32 32 H 1.09001 * 109.46689 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47413 * 300.00004 * 3 2 1 34 34 H 1.08997 * 109.46990 * 60.00979 * 3 2 1 35 35 H 0.96994 * 120.00312 * 179.69418 * 8 7 6 36 36 H 0.97003 * 119.99932 * 355.80255 * 16 15 13 37 37 H 1.07996 * 120.00067 * 0.02562 * 22 21 11 38 38 H 1.07998 * 119.99365 * 180.27890 * 23 22 21 39 39 H 1.07997 * 120.00149 * 179.83244 * 24 23 22 40 40 H 1.07991 * 120.00263 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00359 * 359.97407 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7856 -0.3606 2.4206 6 7 2.3674 -1.1921 3.2101 7 6 3.0229 -2.1103 2.4990 8 7 3.7741 -3.1731 3.0121 9 6 3.8893 -3.3350 4.3452 10 8 3.3413 -2.5595 5.0999 11 6 4.6980 -4.4801 4.8981 12 1 5.7285 -4.3972 4.5529 13 6 4.1123 -5.7846 4.4221 14 1 3.0631 -5.8468 4.1738 15 6 4.9160 -6.8987 4.3036 16 7 6.1630 -6.8570 4.7192 17 14 4.2358 -8.4646 3.5456 18 1 5.2943 -9.5061 3.5277 19 1 3.0833 -8.9439 4.3502 20 1 3.7893 -8.1888 2.1566 21 6 4.6671 -4.4360 6.4041 22 6 3.4805 -4.6570 7.0778 23 6 3.4531 -4.6207 8.4595 24 6 4.6104 -4.3544 9.1670 25 6 5.7960 -4.1281 8.4931 26 6 5.8242 -4.1687 7.1115 27 7 2.8292 -1.8373 1.2257 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6768 1.9563 0.8901 35 1 4.2120 -3.7934 2.4086 36 1 6.5356 -6.0258 5.0528 37 1 2.5756 -4.8617 6.5250 38 1 2.5269 -4.7979 8.9860 39 1 4.5884 -4.3235 10.2463 40 1 6.7000 -3.9197 9.0458 41 1 6.7504 -3.9919 6.5851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361929987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:15 Heat of formation + Delta-G solvation = 99.481937 kcal Electronic energy + Delta-G solvation = -25717.264405 eV Core-core repulsion = 22020.722432 eV Total energy + Delta-G solvation = -3696.541973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.26425 -41.25573 -39.58900 -37.56778 -36.06690 -35.87717 -33.46833 -32.78202 -32.04360 -31.64442 -29.10134 -28.32739 -25.99274 -25.89767 -24.41304 -23.28571 -22.97268 -22.05110 -20.96228 -19.34009 -18.93968 -18.18784 -17.94441 -17.53987 -17.41200 -16.39347 -15.92623 -15.63427 -15.50966 -15.49011 -15.05607 -14.89440 -14.57688 -14.23523 -14.06578 -13.90463 -13.60843 -13.31295 -13.28861 -13.24031 -12.96913 -12.77808 -12.59295 -12.41944 -12.14886 -11.98187 -11.91894 -11.88459 -11.78500 -11.53381 -10.99620 -10.83641 -10.58875 -10.21840 -9.65706 -9.38480 -8.65365 -6.42704 -0.16501 0.49411 0.66020 0.73190 0.90855 1.58687 1.63359 1.67424 1.83626 1.87852 2.56731 3.01019 3.07441 3.17605 3.40166 3.73261 3.81155 3.93476 4.08857 4.17801 4.22264 4.29546 4.31196 4.37583 4.48774 4.59195 4.60814 4.71936 4.78974 4.81490 4.88089 5.11530 5.14769 5.20403 5.23264 5.30569 5.31948 5.64457 5.69910 5.71451 6.00677 6.04014 6.12991 6.30296 6.51803 6.99280 7.24740 7.35239 8.74200 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.003943 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.520605 B = 7098.838664 C = 8538.052748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 C -0.159 4.159 4 N -0.179 5.179 5 N 0.001 4.999 6 N -0.334 5.334 7 C 0.414 3.586 8 N -0.612 5.612 9 C 0.535 3.465 10 O -0.524 6.524 11 C 0.056 3.944 12 H 0.063 0.937 13 C -0.598 4.598 14 H 0.049 0.951 15 C -0.002 4.002 16 N -0.913 5.913 17 Si 1.108 2.892 18 H -0.284 1.284 19 H -0.281 1.281 20 H -0.264 1.264 21 C -0.050 4.050 22 C -0.106 4.106 23 C -0.134 4.134 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.145 4.145 27 N -0.336 5.336 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.054 0.946 31 H 0.141 0.859 32 H 0.056 0.944 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.438 0.562 36 H 0.267 0.733 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 11.413 -8.931 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 C -0.218 4.218 4 N -0.096 5.096 5 N 0.006 4.994 6 N -0.213 5.213 7 C 0.043 3.957 8 N -0.267 5.267 9 C 0.323 3.677 10 O -0.395 6.395 11 C 0.035 3.965 12 H 0.081 0.919 13 C -0.635 4.635 14 H 0.067 0.933 15 C -0.205 4.205 16 N -0.548 5.548 17 Si 0.931 3.069 18 H -0.209 1.209 19 H -0.207 1.207 20 H -0.189 1.189 21 C -0.051 4.051 22 C -0.124 4.124 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.145 4.145 26 C -0.163 4.163 27 N -0.187 5.187 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.084 0.916 35 H 0.279 0.721 36 H 0.078 0.922 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.951 10.853 -8.728 15.565 hybrid contribution 0.279 0.668 0.053 0.726 sum -6.672 11.521 -8.676 15.891 Atomic orbital electron populations 1.22268 0.90238 1.03528 1.05816 1.22474 0.97117 0.94238 0.81736 1.22265 1.01803 0.91900 1.05812 1.54159 1.31325 1.16759 1.07398 1.78273 1.13892 1.17743 0.89497 1.75683 1.14838 1.04757 1.26042 1.21941 0.94464 0.91811 0.87507 1.42874 1.49489 1.25653 1.08726 1.21790 0.80271 0.85452 0.80142 1.90714 1.46327 1.45058 1.57438 1.18053 0.96331 0.91979 0.90174 0.91930 1.21614 0.97132 0.94779 1.50000 0.93251 1.26980 0.94532 1.04828 0.94111 1.70886 1.15795 1.29573 1.38553 0.83019 0.74998 0.72203 0.76723 1.20934 1.20720 1.18884 1.20054 0.93793 0.95579 0.95710 1.20834 0.97177 0.99531 0.94851 1.21348 0.99583 1.00847 0.93439 1.21331 0.92296 1.01110 1.00773 1.21333 0.99168 1.00436 0.93534 1.21172 0.97490 1.02155 0.95474 1.78776 1.18924 1.05556 1.15425 0.91630 0.85358 0.92660 0.84163 0.92522 0.85392 0.91619 0.72118 0.92243 0.88882 0.84584 0.83248 0.83814 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.41 71.98 0.68 -1.21 16 2 C 0.14 2.21 3.97 45.00 0.18 2.39 16 3 C -0.16 -1.81 9.41 71.98 0.68 -1.14 16 4 N -0.18 -5.06 4.06 -169.39 -0.69 -5.75 16 5 N 0.00 0.02 12.99 37.02 0.48 0.50 16 6 N -0.33 -14.28 10.56 -58.78 -0.62 -14.90 16 7 C 0.41 16.71 8.97 260.70 2.34 19.05 16 8 N -0.61 -25.29 5.34 -312.70 -1.67 -26.96 16 9 C 0.54 25.23 7.01 87.66 0.61 25.85 16 10 O -0.52 -27.26 14.16 -3.05 -0.04 -27.30 16 11 C 0.06 2.72 1.94 -13.03 -0.03 2.69 16 12 H 0.06 3.08 6.63 -2.39 -0.02 3.07 16 13 C -0.60 -30.42 7.45 25.60 0.19 -30.23 16 14 H 0.05 2.57 7.82 -2.91 -0.02 2.55 16 15 C 0.00 -0.09 5.45 84.66 0.46 0.37 16 16 N -0.91 -50.13 13.63 21.45 0.29 -49.84 16 17 Si 1.11 46.36 29.91 68.60 2.05 48.41 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 C -0.05 -2.40 4.17 -19.87 -0.08 -2.48 16 22 C -0.11 -4.91 8.32 22.27 0.19 -4.72 16 23 C -0.13 -5.20 10.05 22.27 0.22 -4.97 16 24 C -0.14 -4.74 10.05 22.27 0.22 -4.51 16 25 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 26 C -0.14 -6.24 9.51 22.27 0.21 -6.03 16 27 N -0.34 -11.45 12.79 -58.76 -0.75 -12.21 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.44 16.33 8.71 -92.71 -0.81 15.52 16 36 H 0.27 14.60 6.49 -92.71 -0.60 14.00 16 37 H 0.09 4.55 7.88 -2.91 -0.02 4.53 16 38 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 40 H 0.14 4.15 8.06 -2.92 -0.02 4.13 16 41 H 0.11 4.64 7.96 -2.91 -0.02 4.61 16 Total: -1.00 -71.89 357.14 5.57 -66.32 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.42 Total: 31.07 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 6.10 Total: -9.34 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -2.96 Total: -109.16 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.04 Total: -27.30 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.05 Total: 48.41 kcal Total: -71.89 5.57 -66.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361929987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.803 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds