Wall clock time and date at job start Tue Mar 31 2020 10:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38681 * 120.78807 * 2 1 4 4 C 1.38185 * 119.15904 * 179.97438 * 3 2 1 5 5 N 1.31883 * 120.76769 * 359.97305 * 4 3 2 6 6 C 1.31850 * 121.72542 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.61875 * 179.97438 * 6 5 4 8 8 N 1.46509 * 109.46993 * 275.00465 * 7 6 5 9 9 C 1.34777 * 119.99703 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00357 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47338 * 89.99689 * 21 19 17 23 23 H 1.48500 * 109.47603 * 210.00114 * 21 19 17 24 24 H 1.48507 * 109.47124 * 330.00106 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 C 1.38230 * 120.76481 * 0.27864 * 6 5 4 27 27 H 1.09000 * 109.47431 * 90.00249 * 1 2 3 28 28 H 1.09007 * 109.47420 * 210.00468 * 1 2 3 29 29 H 1.09005 * 109.47483 * 330.00047 * 1 2 3 30 30 H 1.07991 * 120.41559 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.61238 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47065 * 155.00367 * 7 6 5 33 33 H 1.08996 * 109.47026 * 34.99653 * 7 6 5 34 34 H 0.96999 * 119.99737 * 359.97438 * 8 7 6 35 35 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 36 36 H 1.07998 * 126.06449 * 0.02562 * 13 12 11 37 37 H 1.07999 * 126.07092 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 39 39 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 40 40 H 0.96997 * 120.00114 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.42212 * 179.70724 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1914 0.0000 4 6 3.5981 1.1521 0.0005 5 7 4.2403 0.0002 0.0016 6 6 3.5983 -1.1515 0.0016 7 6 4.3800 -2.4400 0.0023 8 7 4.7369 -2.7953 -1.3735 9 6 5.4431 -3.9169 -1.6182 10 8 5.7845 -4.6335 -0.6972 11 7 5.7709 -4.2440 -2.8839 12 6 6.5060 -5.4104 -3.1384 13 6 6.9628 -6.3240 -2.1752 14 6 7.6273 -7.3096 -2.8203 15 7 7.5945 -7.0350 -4.1413 16 6 8.1953 -7.8451 -5.2038 17 6 7.1437 -8.1929 -6.2258 18 1 6.1294 -7.8450 -6.0969 19 6 7.4764 -8.9553 -7.3253 20 7 8.7116 -9.3786 -7.4825 21 14 6.1729 -9.3871 -8.5916 22 1 6.1355 -8.3373 -9.6413 23 1 6.4998 -10.6960 -9.2122 24 1 4.8469 -9.4712 -7.9283 25 7 6.8865 -5.8394 -4.3186 26 6 2.2166 -1.1908 -0.0052 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6966 2.1377 -0.0004 31 1 4.1582 2.0755 0.0001 32 1 3.7720 -3.2336 0.4365 33 1 5.2880 -2.3137 0.5920 34 1 4.4648 -2.2234 -2.1082 35 1 5.4989 -3.6721 -3.6186 36 1 6.8099 -6.2528 -1.1084 37 1 8.0996 -8.1649 -2.3601 38 1 8.9950 -7.2804 -5.6832 39 1 8.6030 -8.7609 -4.7760 40 1 8.9458 -9.9147 -8.2563 41 1 1.6964 -2.1373 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365126471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:40 Heat of formation + Delta-G solvation = 89.415316 kcal Electronic energy + Delta-G solvation = -24122.025354 eV Core-core repulsion = 20425.046859 eV Total energy + Delta-G solvation = -3696.978495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90650 -40.55385 -39.42747 -35.54055 -34.59802 -34.22956 -33.31888 -31.92640 -30.72552 -29.24370 -28.36017 -27.19563 -26.27517 -23.60355 -23.08225 -21.88748 -21.31378 -20.36803 -19.79117 -18.07033 -17.10141 -16.92922 -16.56402 -16.51030 -15.85383 -15.56356 -15.46856 -14.91160 -14.52039 -14.33542 -14.18056 -13.91209 -13.55276 -13.30136 -13.20975 -12.98000 -12.83608 -12.73625 -12.28175 -12.17153 -11.87380 -11.72707 -11.02160 -10.87550 -10.39549 -10.23620 -10.09636 -9.94827 -9.89150 -9.70942 -9.49181 -9.45497 -9.23606 -8.60792 -8.05472 -7.36819 -6.21641 -4.26487 0.55501 0.79068 2.42829 2.70912 3.15488 3.25288 3.30815 3.31013 3.36458 3.70434 3.81273 3.88961 4.11810 4.24336 4.30947 4.42047 4.58886 4.65859 4.84453 5.01867 5.05293 5.13363 5.16960 5.29481 5.38710 5.49872 5.59859 5.67722 5.82442 5.85332 6.18888 6.23739 6.31371 6.58557 6.61543 6.91154 7.04319 7.14175 7.53954 7.55830 7.72523 7.85569 8.00833 8.11097 8.61664 8.70617 8.84162 9.38879 10.87024 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.002127 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.743466 B =13162.468135 C =13926.267593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 C -0.170 4.170 4 C 0.103 3.897 5 N -0.472 5.472 6 C 0.112 3.888 7 C 0.194 3.806 8 N -0.738 5.738 9 C 0.716 3.284 10 O -0.566 6.566 11 N -0.643 5.643 12 C 0.276 3.724 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.321 5.321 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.308 5.308 26 C -0.153 4.153 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 20.110 15.875 29.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.190 4.190 4 C -0.054 4.054 5 N -0.182 5.182 6 C -0.026 4.026 7 C 0.070 3.930 8 N -0.395 5.395 9 C 0.415 3.585 10 O -0.442 6.442 11 N -0.293 5.293 12 C 0.022 3.978 13 C -0.317 4.317 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.141 3.859 17 C -0.565 4.565 18 H 0.087 0.913 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 N -0.139 5.139 26 C -0.174 4.174 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.231 0.769 35 H 0.241 0.759 36 H 0.178 0.822 37 H 0.185 0.815 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.120 19.467 15.282 28.012 hybrid contribution -1.785 0.254 -0.695 1.932 sum -14.905 19.721 14.588 28.703 Atomic orbital electron populations 1.20857 0.89989 1.03525 1.03144 1.20391 0.96993 0.92897 0.94883 1.22125 0.95740 0.98790 1.02345 1.22794 0.91753 0.96076 0.94802 1.67526 1.41301 0.98027 1.11308 1.21208 0.91064 0.93611 0.96700 1.19912 0.99323 0.90709 0.83098 1.44877 1.60138 1.25583 1.08922 1.15534 0.78959 0.81351 0.82628 1.90873 1.58431 1.51796 1.43060 1.41348 1.56450 1.24050 1.07409 1.18775 0.97528 0.88590 0.92895 1.21513 1.11700 0.97396 1.01125 1.22553 1.01781 1.00549 0.85034 1.49042 1.38978 1.16125 1.06127 1.19730 0.93947 0.88589 0.83649 1.21263 0.96143 1.32951 1.06165 0.91324 1.24948 0.95923 0.95397 0.97900 1.69919 1.17596 1.36138 1.29738 0.86325 0.81424 0.77724 0.80994 1.20377 1.21009 1.19748 1.77323 1.17511 1.00717 1.18375 1.21967 0.94617 0.99167 1.01633 0.90291 0.90785 0.90916 0.84674 0.82458 0.89654 0.89471 0.76910 0.75884 0.82153 0.81534 0.93768 0.92527 0.92363 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.06 36.00 0.36 -0.08 16 2 C -0.04 -0.27 5.92 -104.32 -0.62 -0.88 16 3 C -0.17 -0.99 9.82 -39.44 -0.39 -1.37 16 4 C 0.10 0.74 11.18 -17.55 -0.20 0.54 16 5 N -0.47 -4.55 10.27 -9.47 -0.10 -4.64 16 6 C 0.11 0.99 6.15 -82.59 -0.51 0.48 16 7 C 0.19 1.91 5.98 -5.19 -0.03 1.88 16 8 N -0.74 -8.06 5.55 -66.41 -0.37 -8.43 16 9 C 0.72 10.87 8.53 -86.92 -0.74 10.13 16 10 O -0.57 -10.38 13.47 5.29 0.07 -10.31 16 11 N -0.64 -10.34 5.46 -15.51 -0.08 -10.42 16 12 C 0.28 5.70 8.11 -154.36 -1.25 4.45 16 13 C -0.29 -5.84 9.61 -39.83 -0.38 -6.22 16 14 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 15 N -0.32 -7.60 3.67 -62.56 -0.23 -7.83 16 16 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 17 C -0.53 -14.79 9.24 -34.44 -0.32 -15.11 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 21 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 N -0.31 -7.23 12.42 31.44 0.39 -6.84 16 26 C -0.15 -1.10 9.43 -39.44 -0.37 -1.47 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.24 8.10 -51.93 -0.42 -0.18 16 29 H 0.07 0.20 8.10 -51.93 -0.42 -0.22 16 30 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.09 0.78 8.04 -51.93 -0.42 0.37 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.52 8.48 -40.82 -0.35 3.18 16 35 H 0.41 5.35 8.84 -40.82 -0.36 4.99 16 36 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 37 H 0.17 2.78 8.06 -52.49 -0.42 2.36 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 360.48 15.07 5.43 5.43 Total: -1.00 -34.43 360.48 -9.14 -43.57 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.20 Total: 6.37 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -4.77 Total: 1.39 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: 0.35 Total: -62.95 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.43 -9.14 -43.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365126471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.989 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds