Wall clock time and date at job start Tue Mar 31 2020 10:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47314 * 2 1 4 4 C 1.50695 * 109.47209 * 120.00581 * 2 1 3 5 5 C 1.35242 * 126.07263 * 144.99650 * 4 2 1 6 6 C 1.40411 * 107.86801 * 179.97438 * 5 4 2 7 7 N 1.40181 * 125.97253 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00205 * 0.02562 * 7 6 5 9 9 O 1.21584 * 120.00080 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00119 * 180.02562 * 8 7 6 11 11 C 1.39453 * 119.99998 * 175.46017 * 10 8 7 12 12 C 1.38648 * 119.64925 * 186.28884 * 11 10 8 13 13 C 1.40817 * 118.67554 * 179.97438 * 12 11 10 14 14 C 1.41541 * 120.99869 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99728 * 201.14269 * 14 13 12 16 16 C 1.40024 * 119.99985 * 21.14040 * 14 13 12 17 17 N 1.30747 * 120.00163 * 12.11560 * 16 14 13 18 18 Si 1.86800 * 120.00192 * 192.11055 * 16 14 13 19 19 H 1.48505 * 109.47010 * 60.00524 * 18 16 14 20 20 H 1.48497 * 109.47242 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47364 * 300.00716 * 18 16 14 22 22 C 1.41163 * 118.00527 * 359.97438 * 13 12 11 23 23 C 1.36594 * 119.12891 * 0.02562 * 22 13 12 24 24 N 1.32064 * 121.25754 * 359.73812 * 23 22 13 25 25 N 1.31212 * 108.05043 * 0.02562 * 6 5 4 26 26 N 1.34971 * 126.06714 * 324.99643 * 4 2 1 27 27 H 0.96996 * 125.97798 * 0.02562 * 26 4 2 28 28 H 1.08996 * 109.47114 * 299.99596 * 1 2 3 29 29 H 1.09001 * 109.46724 * 59.99889 * 1 2 3 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46774 * 240.00252 * 2 1 3 32 32 H 1.08996 * 109.46700 * 60.00151 * 3 2 1 33 33 H 1.09000 * 109.47230 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47417 * 300.00123 * 3 2 1 35 35 H 1.07997 * 126.06852 * 359.73993 * 5 4 2 36 36 H 0.96997 * 119.99964 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00158 * 355.45554 * 10 8 7 38 38 H 1.08001 * 120.65992 * 359.97438 * 12 11 10 39 39 H 0.97000 * 120.00286 * 179.97438 * 17 16 14 40 40 H 1.07997 * 120.43938 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.37281 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 3.1420 -1.4797 1.3084 6 6 3.2482 -1.9501 2.6271 7 7 4.2605 -2.7818 3.1257 8 6 5.2502 -3.2006 2.3123 9 8 5.2652 -2.8568 1.1462 10 7 6.2232 -4.0007 2.7916 11 6 7.1938 -4.5109 1.9300 12 6 8.1126 -5.4355 2.4025 13 6 9.0835 -5.9377 1.5147 14 6 10.0453 -6.8827 1.9449 15 1 10.9661 -7.0051 1.3939 16 6 9.8031 -7.6589 3.0849 17 7 8.6078 -7.6883 3.6139 18 14 11.1876 -8.6526 3.8499 19 1 12.2824 -7.7387 4.2642 20 1 10.6755 -9.3825 5.0373 21 1 11.7056 -9.6268 2.8559 22 6 9.0687 -5.4702 0.1828 23 6 8.1237 -4.5576 -0.1911 24 7 7.2247 -4.1112 0.6672 25 7 2.2336 -1.4760 3.3109 26 7 1.4547 -0.6922 2.4500 27 1 0.6423 -0.2191 2.6887 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6768 1.9562 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8899 35 1 3.8233 -1.6970 0.4991 36 1 4.2488 -3.0558 4.0561 37 1 6.2484 -4.2215 3.7357 38 1 8.0843 -5.7640 3.4310 39 1 8.4398 -8.2263 4.4034 40 1 9.7955 -5.8288 -0.5310 41 1 8.1091 -4.1970 -1.2090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365517934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:06 Heat of formation + Delta-G solvation = 65.432492 kcal Electronic energy + Delta-G solvation = -25030.548314 eV Core-core repulsion = 21332.529845 eV Total energy + Delta-G solvation = -3698.018468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55732 -41.37111 -39.82996 -36.84090 -36.15853 -35.60129 -35.36686 -32.40489 -31.53500 -30.45715 -30.03100 -28.00453 -27.91504 -24.54297 -23.87603 -23.76408 -22.30484 -21.26646 -21.25622 -19.68062 -19.36942 -18.07374 -17.79227 -17.11894 -16.83274 -16.54210 -16.13801 -15.97808 -15.85590 -15.48222 -15.28278 -14.80992 -14.67483 -14.43260 -14.29326 -14.25103 -13.84039 -13.15430 -13.05454 -12.84781 -12.66449 -12.32461 -12.29191 -12.09523 -12.01143 -11.95916 -11.91031 -11.63171 -11.52979 -11.18939 -11.16288 -9.92099 -9.75610 -9.62647 -9.44034 -8.83107 -8.57526 -6.56094 0.69177 0.91171 1.03649 1.04642 1.43062 1.53951 1.57118 1.66875 2.10831 2.21295 2.35644 2.85385 2.99356 3.57026 3.79960 3.88931 4.08070 4.15587 4.19880 4.42210 4.64977 4.67393 4.73188 4.77757 4.84177 4.94775 4.95433 4.99753 5.09302 5.15120 5.20303 5.28692 5.34294 5.36981 5.50954 5.62680 5.66188 5.82484 5.98700 6.22074 6.38034 6.56693 6.59451 6.81497 6.85549 6.93109 7.45328 7.87216 8.27700 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029324 B = 0.002576 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.608459 B =10866.795336 C =11610.706033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.141 4.141 4 C 0.125 3.875 5 C -0.300 4.300 6 C 0.312 3.688 7 N -0.638 5.638 8 C 0.700 3.300 9 O -0.541 6.541 10 N -0.650 5.650 11 C 0.350 3.650 12 C -0.264 4.264 13 C 0.110 3.890 14 C -0.476 4.476 15 H 0.085 0.915 16 C 0.036 3.964 17 N -0.811 5.811 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.296 4.296 23 C 0.115 3.885 24 N -0.578 5.578 25 N -0.341 5.341 26 N -0.453 5.453 27 H 0.453 0.547 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.423 0.577 37 H 0.423 0.577 38 H 0.138 0.862 39 H 0.292 0.708 40 H 0.116 0.884 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 11.645 0.702 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C -0.199 4.199 4 C -0.005 4.005 5 C -0.330 4.330 6 C 0.056 3.944 7 N -0.292 5.292 8 C 0.399 3.601 9 O -0.412 6.412 10 N -0.300 5.300 11 C 0.124 3.876 12 C -0.290 4.290 13 C 0.102 3.898 14 C -0.507 4.507 15 H 0.103 0.897 16 C -0.181 4.181 17 N -0.437 5.437 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.320 4.320 23 C -0.038 4.038 24 N -0.298 5.298 25 N -0.173 5.173 26 N -0.165 5.165 27 H 0.301 0.699 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.260 0.740 37 H 0.261 0.739 38 H 0.155 0.845 39 H 0.103 0.897 40 H 0.134 0.866 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.762 12.473 0.681 19.338 hybrid contribution 1.358 -1.394 0.940 2.161 sum -13.404 11.079 1.621 17.465 Atomic orbital electron populations 1.21879 0.92019 1.02581 1.04000 1.20031 0.97531 0.96152 0.91724 1.21825 1.00995 0.93572 1.03478 1.21363 0.92923 0.97110 0.89137 1.21588 1.03755 1.09886 0.97796 1.18946 0.89455 0.93389 0.92623 1.41486 1.22939 1.50395 1.14354 1.15884 0.79742 0.79750 0.84773 1.90930 1.75978 1.58191 1.16063 1.42268 1.26041 1.49785 1.11893 1.18109 0.88717 0.92052 0.88747 1.21768 1.01717 1.03137 1.02384 1.18016 0.91239 0.89925 0.90663 1.19887 1.03846 1.17150 1.09815 0.89714 1.26849 0.98640 0.96881 0.95710 1.69756 1.22241 1.32831 1.18871 0.85127 0.77801 0.78038 0.78024 1.18379 1.19059 1.18501 1.21839 1.05501 1.07747 0.96946 1.21898 0.90272 0.93650 0.97968 1.67283 1.28167 1.31784 1.02567 1.77222 1.07000 1.17194 1.15924 1.45701 1.23792 1.41196 1.05837 0.69903 0.91366 0.89519 0.92706 0.88644 0.91945 0.93601 0.89490 0.83480 0.73958 0.73939 0.84478 0.89688 0.86594 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.95 71.98 0.64 -0.87 16 2 C -0.03 -0.55 3.31 -11.54 -0.04 -0.58 16 3 C -0.14 -1.93 9.18 71.98 0.66 -1.27 16 4 C 0.13 2.98 5.90 41.38 0.24 3.22 16 5 C -0.30 -9.92 9.52 22.11 0.21 -9.71 16 6 C 0.31 10.29 8.11 133.32 1.08 11.37 16 7 N -0.64 -20.45 5.45 -321.24 -1.75 -22.20 16 8 C 0.70 28.07 8.49 179.05 1.52 29.59 16 9 O -0.54 -25.68 11.73 -3.98 -0.05 -25.73 16 10 N -0.65 -25.96 5.39 -322.36 -1.74 -27.70 16 11 C 0.35 17.23 7.42 132.76 0.98 18.22 16 12 C -0.26 -13.55 8.67 23.00 0.20 -13.35 16 13 C 0.11 5.83 5.65 -21.12 -0.12 5.72 16 14 C -0.48 -24.36 9.15 23.52 0.22 -24.15 16 15 H 0.08 4.12 7.88 -2.91 -0.02 4.10 16 16 C 0.04 1.69 5.31 85.29 0.45 2.14 16 17 N -0.81 -39.11 10.50 21.84 0.23 -38.88 16 18 Si 0.99 35.48 29.58 68.60 2.03 37.51 16 19 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 20 H -0.27 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 22 C -0.30 -14.62 9.85 22.60 0.22 -14.40 16 23 C 0.12 5.55 11.10 84.27 0.94 6.48 16 24 N -0.58 -29.84 7.86 -194.27 -1.53 -31.37 16 25 N -0.34 -9.83 12.72 -54.44 -0.69 -10.52 16 26 N -0.45 -9.82 7.13 -48.04 -0.34 -10.17 16 27 H 0.45 6.25 8.17 -213.34 -1.74 4.50 16 28 H 0.07 0.49 7.44 -2.39 -0.02 0.47 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.15 5.78 5.91 -2.91 -0.02 5.76 16 36 H 0.42 10.52 8.84 -92.71 -0.82 9.70 16 37 H 0.42 13.53 8.72 -92.71 -0.81 12.72 16 38 H 0.14 6.96 5.81 -2.91 -0.02 6.95 16 39 H 0.29 12.60 8.29 -92.71 -0.77 11.83 16 40 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 41 H 0.15 6.14 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -70.39 348.31 1.11 -69.28 By element: Atomic # 1 Polarization: 49.62 SS G_CDS: -2.26 Total: 47.36 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 7.21 Total: 12.41 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -5.82 Total: -140.83 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.73 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -70.39 1.11 -69.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365517934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.712 kcal (2) G-P(sol) polarization free energy of solvation -70.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds