Wall clock time and date at job start Tue Mar 31 2020 10:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.39753 * 125.84192 * 2 1 4 4 C 1.36125 * 107.83185 * 180.02562 * 3 2 1 5 5 N 1.39410 * 126.22091 * 179.97438 * 4 3 2 6 6 C 1.34772 * 119.99876 * 0.02562 * 5 4 3 7 7 O 1.21614 * 120.00112 * 0.02562 * 6 5 4 8 8 C 1.47409 * 119.99649 * 180.02562 * 6 5 4 9 9 C 1.41208 * 126.44300 * 359.68985 * 8 6 5 10 10 N 1.30290 * 108.03143 * 179.81645 * 9 8 6 11 11 N 1.40512 * 109.02002 * 0.33294 * 10 9 8 12 12 C 1.34036 * 108.17230 * 359.90470 * 11 10 9 13 13 C 1.51385 * 110.34110 * 179.71601 * 12 11 10 14 14 C 1.54571 * 104.14709 * 343.57015 * 13 12 11 15 15 C 1.47259 * 140.81410 * 180.02562 * 11 10 9 16 16 N 1.35265 * 107.56176 * 0.02562 * 4 3 2 17 17 C 1.46504 * 126.04932 * 180.02562 * 16 4 3 18 18 C 1.50693 * 109.47102 * 270.00012 * 17 16 4 19 19 H 1.08004 * 120.00247 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00172 * 179.97438 * 18 17 16 21 21 N 1.31503 * 120.00055 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99609 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47104 * 89.99650 * 22 20 18 24 24 H 1.48502 * 109.47228 * 209.99878 * 22 20 18 25 25 H 1.48501 * 109.47292 * 329.99809 * 22 20 18 26 26 N 1.30853 * 125.83870 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47099 * 270.02719 * 1 2 3 28 28 H 1.09003 * 109.47333 * 30.02060 * 1 2 3 29 29 H 1.08999 * 109.47416 * 150.02401 * 1 2 3 30 30 H 1.08007 * 126.08041 * 0.02562 * 3 2 1 31 31 H 0.97008 * 119.99700 * 180.02562 * 5 4 3 32 32 H 1.08000 * 125.98323 * 359.96377 * 9 8 6 33 33 H 1.09002 * 110.49005 * 102.23955 * 13 12 11 34 34 H 1.08996 * 110.49325 * 224.90985 * 13 12 11 35 35 H 1.08995 * 110.99326 * 266.92127 * 14 13 12 36 36 H 1.09009 * 111.01828 * 143.12206 * 14 13 12 37 37 H 1.09000 * 110.23048 * 316.04721 * 15 11 10 38 38 H 1.08999 * 110.22856 * 77.91874 * 15 11 10 39 39 H 1.08999 * 109.46543 * 30.00152 * 17 16 4 40 40 H 1.08997 * 109.47063 * 149.99676 * 17 16 4 41 41 H 0.97008 * 120.00104 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0006 5 7 4.7509 1.5269 -0.0013 6 6 4.6154 2.8678 -0.0009 7 8 3.5064 3.3669 0.0005 8 6 5.8115 3.7294 -0.0022 9 6 7.1561 3.2979 0.0022 10 7 7.9186 4.3544 -0.0047 11 7 7.1095 5.5032 -0.0062 12 6 5.8276 5.1116 -0.0020 13 6 4.9097 6.3154 0.0037 14 6 5.8255 7.4868 0.4263 15 6 7.2129 6.9721 -0.0127 16 7 3.6092 -0.6406 -0.0015 17 6 4.7869 -1.5120 -0.0018 18 6 5.1910 -1.8098 -1.4227 19 1 4.6273 -1.3915 -2.2435 20 6 6.2811 -2.6155 -1.6750 21 7 6.6341 -2.8749 -2.9149 22 14 7.2566 -3.3384 -0.2554 23 1 6.6827 -4.6557 0.1194 24 1 8.6727 -3.5143 -0.6666 25 1 7.1900 -2.4199 0.9095 26 7 2.2731 -1.0608 -0.0005 27 1 -0.3633 0.0005 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5134 30 1 1.9901 2.1596 0.0004 31 1 5.6355 1.1287 -0.0020 32 1 7.4933 2.2719 0.0078 33 1 4.5024 6.4894 -0.9923 34 1 4.1061 6.1791 0.7274 35 1 5.7896 7.6410 1.5047 36 1 5.5617 8.4009 -0.1058 37 1 7.9768 7.2993 0.6927 38 1 7.4489 7.3288 -1.0152 39 1 5.6081 -1.0129 0.5126 40 1 4.5495 -2.4438 0.5113 41 1 7.4013 -3.4415 -3.0925 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417616736.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:12 Heat of formation + Delta-G solvation = 136.268625 kcal Electronic energy + Delta-G solvation = -25687.389800 eV Core-core repulsion = 21992.443017 eV Total energy + Delta-G solvation = -3694.946783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.04770 -40.74795 -38.80433 -36.61567 -34.66003 -33.67866 -32.11978 -31.35068 -29.71557 -29.49828 -28.58091 -27.14363 -26.25380 -23.15412 -22.58109 -22.25995 -21.12176 -20.22738 -19.43871 -19.07928 -17.34332 -17.14283 -16.82098 -16.41073 -15.28005 -15.13527 -14.73606 -14.62125 -14.42385 -14.16150 -13.95045 -13.75697 -13.63002 -13.41258 -13.05502 -12.71877 -12.54752 -12.38506 -12.26347 -12.02017 -11.84961 -11.75410 -11.62757 -11.11643 -11.03607 -10.80290 -10.41837 -10.18674 -9.89916 -9.71687 -9.56848 -9.45201 -8.82407 -8.80651 -7.88870 -7.39194 -6.29659 -4.33830 1.34443 1.91845 1.99455 2.70763 2.90951 3.12263 3.17985 3.21766 3.41357 3.64831 3.78413 3.80352 4.08903 4.17509 4.25478 4.34116 4.66352 4.87187 4.97146 5.00077 5.07684 5.11357 5.30728 5.35690 5.44573 5.49388 5.57446 5.72814 6.03887 6.10037 6.19395 6.22872 6.31767 6.39705 6.42925 6.44209 6.72109 6.80692 7.24119 7.43053 7.52244 7.65332 7.86320 8.25117 8.43052 8.63562 8.77445 9.25088 10.82605 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011368 B = 0.004345 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.436034 B = 6443.361061 C = 8513.060439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 C -0.293 4.293 4 C 0.311 3.689 5 N -0.638 5.638 6 C 0.604 3.396 7 O -0.523 6.523 8 C -0.275 4.275 9 C 0.090 3.910 10 N -0.273 5.273 11 N -0.384 5.384 12 C 0.142 3.858 13 C -0.070 4.070 14 C -0.133 4.133 15 C 0.125 3.875 16 N -0.345 5.345 17 C 0.230 3.770 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.080 3.920 21 N -0.883 5.883 22 Si 0.872 3.128 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.265 1.265 26 N -0.285 5.285 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.164 0.836 31 H 0.413 0.587 32 H 0.199 0.801 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.050 0.950 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 20.719 8.091 22.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.325 4.325 4 C 0.088 3.912 5 N -0.283 5.283 6 C 0.392 3.608 7 O -0.399 6.399 8 C -0.290 4.290 9 C -0.098 4.098 10 N -0.091 5.091 11 N -0.164 5.164 12 C 0.008 3.992 13 C -0.109 4.109 14 C -0.172 4.172 15 C 0.005 3.995 16 N -0.130 5.130 17 C 0.110 3.890 18 C -0.583 4.583 19 H 0.100 0.900 20 C -0.124 4.124 21 N -0.520 5.520 22 Si 0.698 3.302 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.189 1.189 26 N -0.110 5.110 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.249 0.751 32 H 0.216 0.784 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.193 20.199 7.961 21.712 hybrid contribution 0.687 -0.430 0.414 0.910 sum 0.880 19.769 8.374 21.488 Atomic orbital electron populations 1.20024 0.87503 1.02557 1.02013 1.22039 0.96523 0.91030 1.01496 1.21278 0.88938 1.00497 1.21771 1.17855 0.88092 0.82963 1.02248 1.42494 1.07996 1.05435 1.72409 1.17027 0.87929 0.80231 0.75619 1.90678 1.25920 1.73867 1.49422 1.19211 0.93487 0.90936 1.25385 1.24227 0.90176 0.98798 0.96620 1.77258 1.17016 0.89354 1.25466 1.50140 1.05033 1.06418 1.54769 1.22431 0.88008 0.94149 0.94617 1.21025 0.96981 0.87869 1.05019 1.22875 0.91986 0.98863 1.03449 1.22475 1.00083 0.73012 1.03914 1.48874 1.06150 1.02025 1.55985 1.19930 0.79364 0.90008 0.99655 1.21204 1.14189 1.32539 0.90369 0.90024 1.24817 0.96601 0.95245 0.95755 1.69872 1.26838 1.36627 1.18639 0.86920 0.79999 0.80697 0.82558 1.19511 1.20497 1.18943 1.77350 0.85808 1.21780 1.26054 0.91375 0.91048 0.91454 0.81901 0.75085 0.78395 0.87747 0.87468 0.89182 0.87625 0.88592 0.88820 0.94316 0.93202 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.10 7.21 -82.45 -0.59 0.50 16 3 C -0.29 -6.05 9.58 -39.78 -0.38 -6.43 16 4 C 0.31 6.64 7.66 -153.21 -1.17 5.47 16 5 N -0.64 -11.62 5.40 -12.45 -0.07 -11.69 16 6 C 0.60 10.32 7.78 -12.53 -0.10 10.22 16 7 O -0.52 -9.75 14.02 5.26 0.07 -9.67 16 8 C -0.28 -4.00 6.13 -105.04 -0.64 -4.64 16 9 C 0.09 1.22 11.50 -17.08 -0.20 1.02 16 10 N -0.27 -3.81 12.64 30.82 0.39 -3.42 16 11 N -0.38 -4.43 4.81 -55.13 -0.27 -4.70 16 12 C 0.14 1.73 7.31 -81.30 -0.59 1.14 16 13 C -0.07 -0.56 6.86 -26.72 -0.18 -0.74 16 14 C -0.13 -0.58 7.18 -25.19 -0.18 -0.76 16 15 C 0.13 0.80 7.78 -2.92 -0.02 0.78 16 16 N -0.35 -8.07 3.60 -61.59 -0.22 -8.30 16 17 C 0.23 5.46 5.07 -5.19 -0.03 5.43 16 18 C -0.54 -15.05 9.94 -34.44 -0.34 -15.39 16 19 H 0.08 2.58 8.06 -52.48 -0.42 2.16 16 20 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 21 N -0.88 -25.91 13.96 55.43 0.77 -25.14 16 22 Si 0.87 19.75 27.47 -169.99 -4.67 15.08 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 26 N -0.28 -6.64 12.56 33.65 0.42 -6.22 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.16 3.25 5.82 -52.48 -0.31 2.94 16 31 H 0.41 6.84 6.92 -40.82 -0.28 6.56 16 32 H 0.20 2.23 7.50 -52.49 -0.39 1.84 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.11 0.18 8.14 -51.92 -0.42 -0.24 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 40 H 0.05 1.19 7.57 -51.93 -0.39 0.79 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 349.14 15.07 5.26 5.26 Total: -1.00 -36.01 349.14 -7.57 -43.58 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.11 Total: 7.06 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.16 Total: -1.85 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 1.03 Total: -59.46 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.67 Total: 15.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.01 -7.57 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417616736.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.851 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds