Wall clock time and date at job start Tue Mar 31 2020 10:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 C 1.50700 * 109.47223 * 179.97438 * 3 2 1 5 5 C 1.35244 * 126.06554 * 85.00272 * 4 3 2 6 6 C 1.40402 * 107.86590 * 180.02562 * 5 4 3 7 7 N 1.40190 * 125.97336 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99991 * 359.97438 * 7 6 5 9 9 O 1.21585 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99976 * 179.97438 * 8 7 6 11 11 C 1.39450 * 119.99758 * 174.94315 * 10 8 7 12 12 C 1.38651 * 119.64764 * 174.64176 * 11 10 8 13 13 C 1.40812 * 118.67717 * 179.71862 * 12 11 10 14 14 C 1.41544 * 120.99928 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99831 * 206.19764 * 14 13 12 16 16 C 1.40029 * 120.00122 * 26.19983 * 14 13 12 17 17 N 1.30744 * 119.99831 * 9.89964 * 16 14 13 18 18 Si 1.86792 * 120.00355 * 189.89652 * 16 14 13 19 19 H 1.48503 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47222 * 119.99714 * 18 16 14 21 21 H 1.48497 * 109.47342 * 240.00330 * 18 16 14 22 22 C 1.41170 * 118.00480 * 0.02562 * 13 12 11 23 23 C 1.36593 * 119.12770 * 359.97438 * 22 13 12 24 24 N 1.32070 * 121.25704 * 0.02562 * 23 22 13 25 25 N 1.31217 * 108.05450 * 0.22831 * 6 5 4 26 26 N 1.34965 * 126.07316 * 265.02823 * 4 3 2 27 27 H 0.96995 * 125.97381 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47335 * 299.99222 * 1 2 3 30 30 H 1.09001 * 109.47662 * 59.99812 * 1 2 3 31 31 H 1.08999 * 109.46752 * 240.00520 * 2 1 3 32 32 H 1.08997 * 109.47261 * 120.00449 * 2 1 3 33 33 H 1.08999 * 109.46906 * 60.00614 * 3 2 1 34 34 H 1.08997 * 109.47443 * 300.00338 * 3 2 1 35 35 H 1.08003 * 126.06927 * 0.03878 * 5 4 3 36 36 H 0.97001 * 119.99796 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00098 * 354.94549 * 10 8 7 38 38 H 1.08001 * 120.65860 * 359.74591 * 12 11 10 39 39 H 0.96996 * 120.00246 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.43639 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.36922 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3436 1.3472 -1.0881 6 6 5.6772 1.3849 -0.6506 7 7 6.8142 1.3126 -1.4676 8 6 6.6779 1.1950 -2.8032 9 8 5.5689 1.1520 -3.2997 10 7 7.7710 1.1260 -3.5886 11 6 7.6327 0.8986 -4.9575 12 6 8.7511 0.9397 -5.7760 13 6 8.5889 0.7011 -7.1542 14 6 9.6967 0.7316 -8.0347 15 1 9.5510 0.9701 -9.0779 16 6 10.9817 0.4527 -7.5532 17 7 11.1382 -0.0225 -6.3452 18 14 12.4722 0.7592 -8.6365 19 1 12.0286 1.2958 -9.9483 20 1 13.3691 1.7424 -7.9779 21 1 13.2036 -0.5163 -8.8447 22 6 7.2880 0.4317 -7.6317 23 6 6.2463 0.4121 -6.7484 24 7 6.4349 0.6405 -5.4613 25 7 5.6733 1.4941 0.6570 26 7 4.3412 1.5373 1.0877 27 1 4.0418 1.6177 2.0068 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 4.0127 1.2581 -2.1123 36 1 7.6990 1.3466 -1.0714 37 1 8.6538 1.2346 -3.2018 38 1 9.7272 1.1502 -5.3646 39 1 12.0282 -0.2161 -6.0117 40 1 7.1186 0.2434 -8.6816 41 1 5.2494 0.2068 -7.1095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467112221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:10 Heat of formation + Delta-G solvation = 81.429412 kcal Electronic energy + Delta-G solvation = -24854.808945 eV Core-core repulsion = 21157.484155 eV Total energy + Delta-G solvation = -3697.324790 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33446 -39.80141 -38.09073 -35.54069 -34.55930 -34.14378 -33.79516 -30.70785 -30.46942 -30.11473 -28.39317 -26.63261 -26.02176 -23.00237 -22.14485 -21.93710 -20.70483 -20.63931 -19.84404 -18.14472 -17.70937 -17.03903 -16.36722 -15.53953 -15.35455 -15.21688 -15.01287 -14.49573 -14.34984 -14.20849 -13.86346 -13.65445 -13.30201 -13.12446 -12.87387 -12.63489 -12.49107 -12.35763 -11.67506 -11.55051 -11.46113 -11.20502 -10.98553 -10.95455 -10.78546 -10.58067 -10.28022 -10.12170 -9.80664 -9.55573 -9.42529 -8.61606 -8.21964 -7.99034 -7.77201 -7.07350 -6.77026 -4.64366 1.86571 2.33888 2.59225 2.77253 2.95565 3.01643 3.06829 3.23418 3.25108 3.84239 3.87151 4.30368 4.59677 4.68878 4.69456 4.81192 5.05787 5.25081 5.29437 5.47773 5.55535 5.66395 5.74647 5.80044 5.85774 5.91441 6.02533 6.08380 6.39294 6.50262 6.61454 6.76653 6.90890 7.01336 7.08663 7.13461 7.35162 7.38763 7.45451 7.73056 7.86881 8.08513 8.28877 8.43337 8.70216 8.74441 9.00476 9.67070 10.07915 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.002569 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.735801 B =10897.843377 C =11812.005255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.055 4.055 4 C 0.091 3.909 5 C -0.257 4.257 6 C 0.333 3.667 7 N -0.654 5.654 8 C 0.700 3.300 9 O -0.508 6.508 10 N -0.659 5.659 11 C 0.353 3.647 12 C -0.240 4.240 13 C 0.143 3.857 14 C -0.452 4.452 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.794 5.794 18 Si 0.915 3.085 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.281 4.281 23 C 0.120 3.880 24 N -0.553 5.553 25 N -0.335 5.335 26 N -0.475 5.475 27 H 0.436 0.564 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.176 0.824 36 H 0.407 0.593 37 H 0.408 0.592 38 H 0.134 0.866 39 H 0.281 0.719 40 H 0.102 0.898 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 2.041 13.037 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.094 4.094 4 C -0.037 4.037 5 C -0.287 4.287 6 C 0.076 3.924 7 N -0.307 5.307 8 C 0.399 3.601 9 O -0.376 6.376 10 N -0.308 5.308 11 C 0.127 3.873 12 C -0.266 4.266 13 C 0.134 3.866 14 C -0.484 4.484 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.421 5.421 18 Si 0.739 3.261 19 H -0.183 1.183 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.304 4.304 23 C -0.034 4.034 24 N -0.272 5.272 25 N -0.167 5.167 26 N -0.186 5.186 27 H 0.280 0.720 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.193 0.807 36 H 0.242 0.758 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.909 1.969 14.256 18.059 hybrid contribution 1.971 0.077 -0.706 2.095 sum -8.939 2.046 13.550 16.361 Atomic orbital electron populations 1.21777 0.95338 1.01934 1.01900 1.21521 0.95858 0.95481 1.03008 1.20298 0.86935 0.98347 1.03859 1.21085 0.94295 1.00952 0.87417 1.21709 0.89709 1.16186 1.01118 1.18807 0.87613 0.97272 0.88728 1.41873 1.06994 1.76836 1.04994 1.15836 0.85726 0.78998 0.79578 1.90933 1.22842 1.51985 1.71824 1.42453 1.07921 1.73919 1.06465 1.17908 0.91195 0.96839 0.81362 1.21627 0.97156 1.13308 0.94475 1.17587 0.91881 0.85602 0.91527 1.19621 0.90624 1.41501 0.96621 0.89964 1.25956 1.00847 0.92144 0.95397 1.69744 1.24895 1.30836 1.16593 0.86153 0.80241 0.78865 0.80852 1.18341 1.19703 1.19889 1.21702 0.94731 1.14431 0.99574 1.21458 0.97483 0.96256 0.88154 1.67130 1.22519 1.22686 1.14859 1.77281 0.96891 1.32787 1.09714 1.45731 1.02852 1.61799 1.08184 0.72043 0.92502 0.92852 0.92308 0.90827 0.92111 0.90856 0.88902 0.80694 0.75780 0.75748 0.84874 0.90844 0.87946 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 3 C -0.06 -0.47 5.76 -27.88 -0.16 -0.63 16 4 C 0.09 1.10 6.45 -82.28 -0.53 0.57 16 5 C -0.26 -4.10 9.52 -39.83 -0.38 -4.48 16 6 C 0.33 5.43 8.11 -154.36 -1.25 4.18 16 7 N -0.65 -10.29 5.45 -15.51 -0.08 -10.38 16 8 C 0.70 13.58 8.48 -86.92 -0.74 12.84 16 9 O -0.51 -11.50 11.76 5.29 0.06 -11.44 16 10 N -0.66 -12.81 5.40 -15.86 -0.09 -12.89 16 11 C 0.35 8.40 7.41 -154.69 -1.15 7.26 16 12 C -0.24 -5.97 8.62 -38.46 -0.33 -6.30 16 13 C 0.14 3.68 5.60 -106.55 -0.60 3.09 16 14 C -0.45 -11.44 9.14 -37.65 -0.34 -11.78 16 15 H 0.08 2.00 7.87 -52.49 -0.41 1.58 16 16 C 0.07 1.77 5.31 -17.34 -0.09 1.68 16 17 N -0.79 -19.23 10.70 55.55 0.59 -18.64 16 18 Si 0.91 17.76 29.57 -169.99 -5.03 12.73 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.28 -6.76 9.85 -39.06 -0.38 -7.14 16 23 C 0.12 2.83 11.10 -18.04 -0.20 2.63 16 24 N -0.55 -13.85 7.89 -12.76 -0.10 -13.95 16 25 N -0.33 -4.96 12.72 31.44 0.40 -4.56 16 26 N -0.47 -5.50 7.35 33.47 0.25 -5.25 16 27 H 0.44 3.42 8.96 -182.62 -1.64 1.78 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.18 3.19 5.91 -52.48 -0.31 2.88 16 36 H 0.41 5.09 8.84 -40.82 -0.36 4.73 16 37 H 0.41 6.42 8.71 -40.82 -0.36 6.06 16 38 H 0.13 3.29 6.11 -52.49 -0.32 2.97 16 39 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 40 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 41 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 351.15 15.07 5.29 5.29 Total: -1.00 -31.96 351.15 -10.98 -42.95 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -6.34 Total: 16.02 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -5.94 Total: 0.11 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: 0.97 Total: -65.67 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.06 Total: -11.44 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.96 -10.98 -42.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467112221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.378 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds