Wall clock time and date at job start Tue Mar 31 2020 10:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47074 * 2 1 4 4 C 1.50700 * 109.47223 * 179.97438 * 3 2 1 5 5 C 1.35244 * 126.06554 * 85.00272 * 4 3 2 6 6 C 1.40402 * 107.86590 * 180.02562 * 5 4 3 7 7 N 1.40190 * 125.97336 * 179.97438 * 6 5 4 8 8 C 1.34775 * 119.99991 * 359.97438 * 7 6 5 9 9 O 1.21585 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99976 * 179.97438 * 8 7 6 11 11 C 1.39450 * 119.99758 * 174.94315 * 10 8 7 12 12 C 1.38651 * 119.64764 * 174.64176 * 11 10 8 13 13 C 1.40812 * 118.67717 * 179.71862 * 12 11 10 14 14 C 1.41544 * 120.99928 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99831 * 206.19764 * 14 13 12 16 16 C 1.40029 * 120.00122 * 26.19983 * 14 13 12 17 17 N 1.30744 * 119.99831 * 9.89964 * 16 14 13 18 18 Si 1.86792 * 120.00355 * 189.89652 * 16 14 13 19 19 H 1.48503 * 109.46835 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47222 * 119.99714 * 18 16 14 21 21 H 1.48497 * 109.47342 * 240.00330 * 18 16 14 22 22 C 1.41170 * 118.00480 * 0.02562 * 13 12 11 23 23 C 1.36593 * 119.12770 * 359.97438 * 22 13 12 24 24 N 1.32070 * 121.25704 * 0.02562 * 23 22 13 25 25 N 1.31217 * 108.05450 * 0.22831 * 6 5 4 26 26 N 1.34965 * 126.07316 * 265.02823 * 4 3 2 27 27 H 0.96995 * 125.97381 * 359.97438 * 26 4 3 28 28 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47335 * 299.99222 * 1 2 3 30 30 H 1.09001 * 109.47662 * 59.99812 * 1 2 3 31 31 H 1.08999 * 109.46752 * 240.00520 * 2 1 3 32 32 H 1.08997 * 109.47261 * 120.00449 * 2 1 3 33 33 H 1.08999 * 109.46906 * 60.00614 * 3 2 1 34 34 H 1.08997 * 109.47443 * 300.00338 * 3 2 1 35 35 H 1.08003 * 126.06927 * 0.03878 * 5 4 3 36 36 H 0.97001 * 119.99796 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00098 * 354.94549 * 10 8 7 38 38 H 1.08001 * 120.65860 * 359.74591 * 12 11 10 39 39 H 0.96996 * 120.00246 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.43639 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.36922 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3436 1.3472 -1.0881 6 6 5.6772 1.3849 -0.6506 7 7 6.8142 1.3126 -1.4676 8 6 6.6779 1.1950 -2.8032 9 8 5.5689 1.1520 -3.2997 10 7 7.7710 1.1260 -3.5886 11 6 7.6327 0.8986 -4.9575 12 6 8.7511 0.9397 -5.7760 13 6 8.5889 0.7011 -7.1542 14 6 9.6967 0.7316 -8.0347 15 1 9.5510 0.9701 -9.0779 16 6 10.9817 0.4527 -7.5532 17 7 11.1382 -0.0225 -6.3452 18 14 12.4722 0.7592 -8.6365 19 1 12.0286 1.2958 -9.9483 20 1 13.3691 1.7424 -7.9779 21 1 13.2036 -0.5163 -8.8447 22 6 7.2880 0.4317 -7.6317 23 6 6.2463 0.4121 -6.7484 24 7 6.4349 0.6405 -5.4613 25 7 5.6733 1.4941 0.6570 26 7 4.3412 1.5373 1.0877 27 1 4.0418 1.6177 2.0068 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 4.0127 1.2581 -2.1123 36 1 7.6990 1.3466 -1.0714 37 1 8.6538 1.2346 -3.2018 38 1 9.7272 1.1502 -5.3646 39 1 12.0282 -0.2161 -6.0117 40 1 7.1186 0.2434 -8.6816 41 1 5.2494 0.2068 -7.1095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467112221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:09 Heat of formation + Delta-G solvation = 61.832279 kcal Electronic energy + Delta-G solvation = -24855.658740 eV Core-core repulsion = 21157.484155 eV Total energy + Delta-G solvation = -3698.174585 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.50758 -41.35765 -39.83080 -36.56671 -36.09641 -35.59046 -35.41321 -32.42455 -31.73605 -31.22541 -30.08694 -27.90409 -27.44725 -24.54744 -23.78552 -22.89837 -22.30681 -21.71934 -21.22493 -19.67163 -19.38809 -18.09313 -17.92871 -17.13156 -16.80174 -16.59529 -16.10438 -15.99590 -15.85425 -15.65311 -15.35740 -14.72201 -14.62771 -14.40610 -14.38204 -14.27449 -13.88266 -13.16931 -13.01419 -12.85917 -12.69097 -12.47277 -12.27564 -12.07514 -11.93607 -11.85164 -11.80810 -11.51928 -11.51361 -11.20018 -11.16097 -9.90813 -9.74268 -9.63339 -9.43574 -8.85846 -8.56969 -6.55820 0.68395 0.90493 1.01654 1.04628 1.43337 1.54262 1.57661 1.65444 2.12236 2.22106 2.35575 2.85668 3.00066 3.66235 3.77496 3.94765 4.10973 4.15190 4.19641 4.43193 4.56840 4.69505 4.74601 4.81893 4.85262 4.91112 4.94863 4.98604 5.09126 5.20907 5.25969 5.26380 5.33165 5.47104 5.49539 5.61964 5.66493 5.82787 5.97717 6.21983 6.39281 6.56739 6.60221 6.81201 6.85336 6.92822 7.44437 7.84927 8.30707 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025712 B = 0.002569 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.735801 B =10897.843377 C =11812.005255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.053 4.053 4 C 0.119 3.881 5 C -0.298 4.298 6 C 0.311 3.689 7 N -0.638 5.638 8 C 0.701 3.299 9 O -0.541 6.541 10 N -0.651 5.651 11 C 0.352 3.648 12 C -0.256 4.256 13 C 0.113 3.887 14 C -0.480 4.480 15 H 0.084 0.916 16 C 0.036 3.964 17 N -0.817 5.817 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.263 1.263 21 H -0.267 1.267 22 C -0.293 4.293 23 C 0.115 3.885 24 N -0.576 5.576 25 N -0.342 5.342 26 N -0.454 5.454 27 H 0.455 0.545 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.423 0.577 37 H 0.423 0.577 38 H 0.130 0.870 39 H 0.291 0.709 40 H 0.117 0.883 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 2.394 14.465 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.092 4.092 4 C -0.011 4.011 5 C -0.329 4.329 6 C 0.055 3.945 7 N -0.292 5.292 8 C 0.400 3.600 9 O -0.412 6.412 10 N -0.301 5.301 11 C 0.125 3.875 12 C -0.282 4.282 13 C 0.105 3.895 14 C -0.511 4.511 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.443 5.443 18 Si 0.810 3.190 19 H -0.182 1.182 20 H -0.188 1.188 21 H -0.192 1.192 22 C -0.317 4.317 23 C -0.038 4.038 24 N -0.296 5.296 25 N -0.175 5.175 26 N -0.167 5.167 27 H 0.303 0.697 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.260 0.740 37 H 0.261 0.739 38 H 0.148 0.852 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.056 2.327 15.773 19.402 hybrid contribution 1.927 -0.052 -1.029 2.185 sum -9.129 2.275 14.744 17.490 Atomic orbital electron populations 1.21752 0.93810 1.02335 1.02714 1.21479 0.97127 0.94932 1.02087 1.20466 0.84071 0.98979 1.05643 1.21424 0.95749 0.97667 0.86267 1.21588 0.90572 1.19584 1.01142 1.18967 0.87648 0.98630 0.89293 1.41491 1.08004 1.76007 1.03692 1.15867 0.85022 0.78627 0.80520 1.90925 1.24041 1.53369 1.72878 1.42282 1.08990 1.73603 1.05184 1.18074 0.90690 0.95866 0.82879 1.21600 0.97282 1.14676 0.94625 1.18019 0.92970 0.86170 0.92351 1.19892 0.91681 1.42726 0.96829 0.89812 1.26808 1.03200 0.91229 0.96784 1.69778 1.26289 1.30344 1.17867 0.85040 0.76227 0.78933 0.78824 1.18193 1.18776 1.19201 1.21888 0.94446 1.14865 1.00475 1.21913 0.98666 0.95335 0.87849 1.67260 1.23076 1.23654 1.15597 1.77219 0.98656 1.32855 1.08737 1.45767 1.01802 1.59992 1.09154 0.69676 0.92376 0.91105 0.92419 0.93303 0.91563 0.87369 0.88800 0.83463 0.73968 0.73911 0.85212 0.89808 0.86505 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 3 C -0.05 -0.78 5.76 29.85 0.17 -0.60 16 4 C 0.12 2.73 6.45 41.39 0.27 3.00 16 5 C -0.30 -9.68 9.52 22.11 0.21 -9.47 16 6 C 0.31 10.12 8.11 133.31 1.08 11.20 16 7 N -0.64 -20.25 5.45 -321.24 -1.75 -22.01 16 8 C 0.70 27.84 8.48 179.06 1.52 29.36 16 9 O -0.54 -25.43 11.76 -3.98 -0.05 -25.48 16 10 N -0.65 -25.80 5.40 -322.37 -1.74 -27.54 16 11 C 0.35 17.19 7.41 132.77 0.98 18.17 16 12 C -0.26 -13.08 8.62 23.00 0.20 -12.88 16 13 C 0.11 6.00 5.60 -21.11 -0.12 5.88 16 14 C -0.48 -24.62 9.14 23.52 0.21 -24.41 16 15 H 0.08 4.11 7.87 -2.91 -0.02 4.09 16 16 C 0.04 1.70 5.31 85.29 0.45 2.16 16 17 N -0.82 -39.59 10.70 21.84 0.23 -39.36 16 18 Si 0.99 35.81 29.57 68.60 2.03 37.84 16 19 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 21 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 22 C -0.29 -14.38 9.85 22.60 0.22 -14.15 16 23 C 0.12 5.52 11.10 84.27 0.94 6.46 16 24 N -0.58 -29.51 7.89 -194.27 -1.53 -31.04 16 25 N -0.34 -9.73 12.72 -54.43 -0.69 -10.42 16 26 N -0.45 -9.53 7.35 -48.03 -0.35 -9.88 16 27 H 0.46 5.68 8.96 -213.34 -1.91 3.77 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.15 5.69 5.91 -2.91 -0.02 5.67 16 36 H 0.42 10.42 8.84 -92.71 -0.82 9.60 16 37 H 0.42 13.49 8.71 -92.71 -0.81 12.69 16 38 H 0.13 6.58 6.11 -2.91 -0.02 6.57 16 39 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16 40 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 41 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -70.57 351.15 0.75 -69.82 By element: Atomic # 1 Polarization: 48.31 SS G_CDS: -2.43 Total: 45.88 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.03 Total: 12.18 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -5.84 Total: -140.25 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal Total: -70.57 0.75 -69.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467112221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.652 kcal (2) G-P(sol) polarization free energy of solvation -70.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds