Wall clock time and date at job start Tue Mar 31 2020 10:54:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47074 * 2 1
4 4 C 1.50700 * 109.47223 * 179.97438 * 3 2 1
5 5 C 1.35244 * 126.06554 * 85.00272 * 4 3 2
6 6 C 1.40402 * 107.86590 * 180.02562 * 5 4 3
7 7 N 1.40190 * 125.97336 * 179.97438 * 6 5 4
8 8 C 1.34775 * 119.99991 * 359.97438 * 7 6 5
9 9 O 1.21585 * 119.99916 * 0.02562 * 8 7 6
10 10 N 1.34773 * 119.99976 * 179.97438 * 8 7 6
11 11 C 1.39450 * 119.99758 * 174.94315 * 10 8 7
12 12 C 1.38651 * 119.64764 * 174.64176 * 11 10 8
13 13 C 1.40812 * 118.67717 * 179.71862 * 12 11 10
14 14 C 1.41544 * 120.99928 * 179.97438 * 13 12 11
15 15 H 1.07998 * 119.99831 * 206.19764 * 14 13 12
16 16 C 1.40029 * 120.00122 * 26.19983 * 14 13 12
17 17 N 1.30744 * 119.99831 * 9.89964 * 16 14 13
18 18 Si 1.86792 * 120.00355 * 189.89652 * 16 14 13
19 19 H 1.48503 * 109.46835 * 0.02562 * 18 16 14
20 20 H 1.48496 * 109.47222 * 119.99714 * 18 16 14
21 21 H 1.48497 * 109.47342 * 240.00330 * 18 16 14
22 22 C 1.41170 * 118.00480 * 0.02562 * 13 12 11
23 23 C 1.36593 * 119.12770 * 359.97438 * 22 13 12
24 24 N 1.32070 * 121.25704 * 0.02562 * 23 22 13
25 25 N 1.31217 * 108.05450 * 0.22831 * 6 5 4
26 26 N 1.34965 * 126.07316 * 265.02823 * 4 3 2
27 27 H 0.96995 * 125.97381 * 359.97438 * 26 4 3
28 28 H 1.09003 * 109.47244 * 179.97438 * 1 2 3
29 29 H 1.09006 * 109.47335 * 299.99222 * 1 2 3
30 30 H 1.09001 * 109.47662 * 59.99812 * 1 2 3
31 31 H 1.08999 * 109.46752 * 240.00520 * 2 1 3
32 32 H 1.08997 * 109.47261 * 120.00449 * 2 1 3
33 33 H 1.08999 * 109.46906 * 60.00614 * 3 2 1
34 34 H 1.08997 * 109.47443 * 300.00338 * 3 2 1
35 35 H 1.08003 * 126.06927 * 0.03878 * 5 4 3
36 36 H 0.97001 * 119.99796 * 180.02562 * 7 6 5
37 37 H 0.96995 * 120.00098 * 354.94549 * 10 8 7
38 38 H 1.08001 * 120.65860 * 359.74591 * 12 11 10
39 39 H 0.96996 * 120.00246 * 179.97438 * 17 16 14
40 40 H 1.08001 * 120.43639 * 179.97438 * 22 13 12
41 41 H 1.08000 * 119.36922 * 179.97438 * 23 22 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5470 1.4426 0.0006
5 6 4.3436 1.3472 -1.0881
6 6 5.6772 1.3849 -0.6506
7 7 6.8142 1.3126 -1.4676
8 6 6.6779 1.1950 -2.8032
9 8 5.5689 1.1520 -3.2997
10 7 7.7710 1.1260 -3.5886
11 6 7.6327 0.8986 -4.9575
12 6 8.7511 0.9397 -5.7760
13 6 8.5889 0.7011 -7.1542
14 6 9.6967 0.7316 -8.0347
15 1 9.5510 0.9701 -9.0779
16 6 10.9817 0.4527 -7.5532
17 7 11.1382 -0.0225 -6.3452
18 14 12.4722 0.7592 -8.6365
19 1 12.0286 1.2958 -9.9483
20 1 13.3691 1.7424 -7.9779
21 1 13.2036 -0.5163 -8.8447
22 6 7.2880 0.4317 -7.6317
23 6 6.2463 0.4121 -6.7484
24 7 6.4349 0.6405 -5.4613
25 7 5.6733 1.4941 0.6570
26 7 4.3412 1.5373 1.0877
27 1 4.0418 1.6177 2.0068
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 1.8932 -0.5138 -0.8900
32 1 1.8933 -0.5139 0.8899
33 1 1.6767 1.9563 0.8900
34 1 1.6766 1.9564 -0.8899
35 1 4.0127 1.2581 -2.1123
36 1 7.6990 1.3466 -1.0714
37 1 8.6538 1.2346 -3.2018
38 1 9.7272 1.1502 -5.3646
39 1 12.0282 -0.2161 -6.0117
40 1 7.1186 0.2434 -8.6816
41 1 5.2494 0.2068 -7.1095
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001467112221.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:09
Heat of formation + Delta-G solvation = 61.832279 kcal
Electronic energy + Delta-G solvation = -24855.658740 eV
Core-core repulsion = 21157.484155 eV
Total energy + Delta-G solvation = -3698.174585 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.50758 -41.35765 -39.83080 -36.56671 -36.09641 -35.59046 -35.41321 -32.42455
-31.73605 -31.22541 -30.08694 -27.90409 -27.44725 -24.54744 -23.78552 -22.89837
-22.30681 -21.71934 -21.22493 -19.67163 -19.38809 -18.09313 -17.92871 -17.13156
-16.80174 -16.59529 -16.10438 -15.99590 -15.85425 -15.65311 -15.35740 -14.72201
-14.62771 -14.40610 -14.38204 -14.27449 -13.88266 -13.16931 -13.01419 -12.85917
-12.69097 -12.47277 -12.27564 -12.07514 -11.93607 -11.85164 -11.80810 -11.51928
-11.51361 -11.20018 -11.16097 -9.90813 -9.74268 -9.63339 -9.43574 -8.85846
-8.56969 -6.55820 0.68395 0.90493 1.01654 1.04628 1.43337 1.54262
1.57661 1.65444 2.12236 2.22106 2.35575 2.85668 3.00066 3.66235
3.77496 3.94765 4.10973 4.15190 4.19641 4.43193 4.56840 4.69505
4.74601 4.81893 4.85262 4.91112 4.94863 4.98604 5.09126 5.20907
5.25969 5.26380 5.33165 5.47104 5.49539 5.61964 5.66493 5.82787
5.97717 6.21983 6.39281 6.56739 6.60221 6.81201 6.85336 6.92822
7.44437 7.84927 8.30707
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.025712 B = 0.002569 C = 0.002370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1088.735801 B =10897.843377 C =11812.005255
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.118 4.118
3 C -0.053 4.053
4 C 0.119 3.881
5 C -0.298 4.298
6 C 0.311 3.689
7 N -0.638 5.638
8 C 0.701 3.299
9 O -0.541 6.541
10 N -0.651 5.651
11 C 0.352 3.648
12 C -0.256 4.256
13 C 0.113 3.887
14 C -0.480 4.480
15 H 0.084 0.916
16 C 0.036 3.964
17 N -0.817 5.817
18 Si 0.989 3.011
19 H -0.258 1.258
20 H -0.263 1.263
21 H -0.267 1.267
22 C -0.293 4.293
23 C 0.115 3.885
24 N -0.576 5.576
25 N -0.342 5.342
26 N -0.454 5.454
27 H 0.455 0.545
28 H 0.057 0.943
29 H 0.070 0.930
30 H 0.057 0.943
31 H 0.048 0.952
32 H 0.066 0.934
33 H 0.108 0.892
34 H 0.094 0.906
35 H 0.148 0.852
36 H 0.423 0.577
37 H 0.423 0.577
38 H 0.130 0.870
39 H 0.291 0.709
40 H 0.117 0.883
41 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.229 2.394 14.465 17.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.156 4.156
3 C -0.092 4.092
4 C -0.011 4.011
5 C -0.329 4.329
6 C 0.055 3.945
7 N -0.292 5.292
8 C 0.400 3.600
9 O -0.412 6.412
10 N -0.301 5.301
11 C 0.125 3.875
12 C -0.282 4.282
13 C 0.105 3.895
14 C -0.511 4.511
15 H 0.102 0.898
16 C -0.180 4.180
17 N -0.443 5.443
18 Si 0.810 3.190
19 H -0.182 1.182
20 H -0.188 1.188
21 H -0.192 1.192
22 C -0.317 4.317
23 C -0.038 4.038
24 N -0.296 5.296
25 N -0.175 5.175
26 N -0.167 5.167
27 H 0.303 0.697
28 H 0.076 0.924
29 H 0.089 0.911
30 H 0.076 0.924
31 H 0.067 0.933
32 H 0.084 0.916
33 H 0.126 0.874
34 H 0.112 0.888
35 H 0.165 0.835
36 H 0.260 0.740
37 H 0.261 0.739
38 H 0.148 0.852
39 H 0.102 0.898
40 H 0.135 0.865
41 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -11.056 2.327 15.773 19.402
hybrid contribution 1.927 -0.052 -1.029 2.185
sum -9.129 2.275 14.744 17.490
Atomic orbital electron populations
1.21752 0.93810 1.02335 1.02714 1.21479 0.97127 0.94932 1.02087
1.20466 0.84071 0.98979 1.05643 1.21424 0.95749 0.97667 0.86267
1.21588 0.90572 1.19584 1.01142 1.18967 0.87648 0.98630 0.89293
1.41491 1.08004 1.76007 1.03692 1.15867 0.85022 0.78627 0.80520
1.90925 1.24041 1.53369 1.72878 1.42282 1.08990 1.73603 1.05184
1.18074 0.90690 0.95866 0.82879 1.21600 0.97282 1.14676 0.94625
1.18019 0.92970 0.86170 0.92351 1.19892 0.91681 1.42726 0.96829
0.89812 1.26808 1.03200 0.91229 0.96784 1.69778 1.26289 1.30344
1.17867 0.85040 0.76227 0.78933 0.78824 1.18193 1.18776 1.19201
1.21888 0.94446 1.14865 1.00475 1.21913 0.98666 0.95335 0.87849
1.67260 1.23076 1.23654 1.15597 1.77219 0.98656 1.32855 1.08737
1.45767 1.01802 1.59992 1.09154 0.69676 0.92376 0.91105 0.92419
0.93303 0.91563 0.87369 0.88800 0.83463 0.73968 0.73911 0.85212
0.89808 0.86505 0.83252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16
2 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16
3 C -0.05 -0.78 5.76 29.85 0.17 -0.60 16
4 C 0.12 2.73 6.45 41.39 0.27 3.00 16
5 C -0.30 -9.68 9.52 22.11 0.21 -9.47 16
6 C 0.31 10.12 8.11 133.31 1.08 11.20 16
7 N -0.64 -20.25 5.45 -321.24 -1.75 -22.01 16
8 C 0.70 27.84 8.48 179.06 1.52 29.36 16
9 O -0.54 -25.43 11.76 -3.98 -0.05 -25.48 16
10 N -0.65 -25.80 5.40 -322.37 -1.74 -27.54 16
11 C 0.35 17.19 7.41 132.77 0.98 18.17 16
12 C -0.26 -13.08 8.62 23.00 0.20 -12.88 16
13 C 0.11 6.00 5.60 -21.11 -0.12 5.88 16
14 C -0.48 -24.62 9.14 23.52 0.21 -24.41 16
15 H 0.08 4.11 7.87 -2.91 -0.02 4.09 16
16 C 0.04 1.70 5.31 85.29 0.45 2.16 16
17 N -0.82 -39.59 10.70 21.84 0.23 -39.36 16
18 Si 0.99 35.81 29.57 68.60 2.03 37.84 16
19 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16
20 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16
21 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16
22 C -0.29 -14.38 9.85 22.60 0.22 -14.15 16
23 C 0.12 5.52 11.10 84.27 0.94 6.46 16
24 N -0.58 -29.51 7.89 -194.27 -1.53 -31.04 16
25 N -0.34 -9.73 12.72 -54.43 -0.69 -10.42 16
26 N -0.45 -9.53 7.35 -48.03 -0.35 -9.88 16
27 H 0.46 5.68 8.96 -213.34 -1.91 3.77 16
28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16
29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16
30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
33 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16
34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
35 H 0.15 5.69 5.91 -2.91 -0.02 5.67 16
36 H 0.42 10.42 8.84 -92.71 -0.82 9.60 16
37 H 0.42 13.49 8.71 -92.71 -0.81 12.69 16
38 H 0.13 6.58 6.11 -2.91 -0.02 6.57 16
39 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16
40 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16
41 H 0.15 6.12 8.06 -2.91 -0.02 6.10 16
Total: -1.00 -70.57 351.15 0.75 -69.82
By element:
Atomic # 1 Polarization: 48.31 SS G_CDS: -2.43 Total: 45.88 kcal
Atomic # 6 Polarization: 5.15 SS G_CDS: 7.03 Total: 12.18 kcal
Atomic # 7 Polarization: -134.41 SS G_CDS: -5.84 Total: -140.25 kcal
Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.48 kcal
Atomic # 14 Polarization: 35.81 SS G_CDS: 2.03 Total: 37.84 kcal
Total: -70.57 0.75 -69.82 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001467112221.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.652 kcal
(2) G-P(sol) polarization free energy of solvation -70.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.084 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.820 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.832 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds