Wall clock time and date at job start Tue Mar 31 2020 11:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39658 * 120.08543 * 0.02562 * 16 14 13 18 18 C 1.38009 * 120.09091 * 179.97438 * 17 16 14 19 19 C 1.38170 * 120.27019 * 0.02562 * 18 17 16 20 20 C 1.39389 * 120.17434 * 359.97438 * 19 18 17 21 21 C 1.48473 * 120.04479 * 179.97438 * 20 19 18 22 22 N 1.34046 * 126.67025 * 179.68963 * 21 20 19 23 23 N 1.28994 * 107.26756 * 179.83757 * 22 21 20 24 24 N 1.28730 * 108.94111 * 0.43013 * 23 22 21 25 25 H 0.96997 * 125.34489 * 179.75376 * 24 23 22 26 26 N 1.28871 * 109.31534 * 359.72469 * 24 23 22 27 27 C 1.39067 * 119.90514 * 359.70341 * 20 19 18 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 36 36 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 38 38 H 1.08001 * 119.95290 * 0.02562 * 17 16 14 39 39 H 1.08002 * 119.86646 * 179.97438 * 18 17 16 40 40 H 1.08006 * 119.91442 * 179.97438 * 19 18 17 41 41 H 1.07999 * 120.13318 * 180.29581 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5817 1.3422 4.7507 18 6 0.1216 1.9929 5.8775 19 6 0.4520 1.5258 7.1352 20 6 1.2523 0.3931 7.2740 21 6 1.6060 -0.1060 8.6269 22 7 2.3570 -1.1787 8.9134 23 7 2.4264 -1.2654 10.1985 24 7 1.7474 -0.3037 10.7194 25 1 1.6368 -0.1455 11.6700 26 7 1.2380 0.4162 9.7798 27 6 1.7144 -0.2722 6.1436 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.7095 1.1615 -3.4844 35 1 1.6766 -1.7488 1.2494 36 1 3.1299 -0.7208 1.2495 37 1 0.9942 0.7583 2.3564 38 1 0.3201 1.7114 3.7701 39 1 -0.4985 2.8712 5.7758 40 1 0.0891 2.0397 8.0131 41 1 2.3308 -1.1529 6.2469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:20 Heat of formation + Delta-G solvation = 108.186252 kcal Electronic energy + Delta-G solvation = -24988.806637 eV Core-core repulsion = 21292.642111 eV Total energy + Delta-G solvation = -3696.164526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.73091 -40.08395 -38.38877 -36.34245 -34.71241 -33.96457 -33.29788 -31.47591 -31.04260 -30.38953 -25.90401 -25.74227 -25.28280 -24.99423 -24.62652 -22.96915 -22.06873 -20.14822 -19.47755 -18.88654 -17.86243 -17.41739 -16.35768 -15.86386 -15.68846 -15.27584 -14.80919 -14.70345 -14.54946 -14.18228 -13.81926 -13.31738 -13.28999 -12.93056 -12.64606 -12.61659 -12.20855 -12.04653 -11.64992 -11.51580 -11.41564 -11.32037 -11.19876 -11.19679 -10.88450 -10.66505 -10.40440 -10.21019 -9.67824 -9.65195 -9.29091 -9.18048 -8.97785 -8.79328 -8.46666 -8.32401 -6.02917 -4.12639 0.38553 0.82541 0.97894 1.93546 2.02764 3.06774 3.27436 3.33135 3.36242 3.41051 3.64553 3.86219 3.95178 4.40117 4.67754 4.70737 4.80231 5.02975 5.09819 5.18262 5.24177 5.29649 5.50206 5.74875 6.02537 6.09654 6.13260 6.15670 6.25269 6.31980 6.48300 6.56556 6.76135 6.79848 6.92067 6.98665 7.00711 7.33967 7.54226 7.69072 7.86443 7.99845 8.00066 8.13634 8.37380 8.63102 8.88288 9.53329 10.98607 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034538 B = 0.002413 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.511287 B =11598.680810 C =12218.128206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.546 3.454 15 O -0.543 6.543 16 C -0.126 4.126 17 C -0.065 4.065 18 C -0.128 4.128 19 C -0.061 4.061 20 C -0.032 4.032 21 C 0.225 3.775 22 N -0.263 5.263 23 N -0.048 5.048 24 N -0.229 5.229 25 H 0.475 0.525 26 N -0.296 5.296 27 C -0.019 4.019 28 H 0.005 0.995 29 H 0.086 0.914 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.005 0.995 34 H 0.259 0.741 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.397 0.603 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 4.975 23.137 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.332 3.668 15 O -0.422 6.422 16 C -0.129 4.129 17 C -0.085 4.085 18 C -0.146 4.146 19 C -0.082 4.082 20 C -0.036 4.036 21 C -0.055 4.055 22 N -0.136 5.136 23 N -0.044 5.044 24 N -0.075 5.075 25 H 0.329 0.671 26 N -0.148 5.148 27 C -0.041 4.041 28 H 0.024 0.976 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.024 0.976 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.790 3.943 23.459 23.951 hybrid contribution -0.266 0.379 -0.528 0.702 sum -3.056 4.322 22.931 23.534 Atomic orbital electron populations 1.21841 0.97732 0.99281 1.00064 1.18375 0.92825 0.92792 0.90579 1.21842 0.98704 0.98316 1.00066 1.21018 1.31361 1.12079 0.89814 0.92321 1.24881 0.94870 0.94939 0.98877 1.69810 1.36774 1.22776 1.23121 0.86515 0.78634 0.79769 0.82965 1.19738 1.21082 1.21079 1.21786 0.98347 0.95897 0.83103 1.46248 1.52253 1.31627 1.05850 1.18158 0.80978 0.84325 0.83361 1.90765 1.38361 1.26231 1.86812 1.20075 1.01343 0.97491 0.93994 1.21617 0.93858 0.93263 0.99725 1.21038 1.01208 1.00859 0.91447 1.21305 0.94615 0.93811 0.98433 1.17112 1.02699 0.97747 0.86026 1.23633 0.96673 0.91789 0.93397 1.76179 1.17254 1.16925 1.03222 1.78955 1.12227 1.09822 1.03365 1.47728 1.31315 1.16602 1.11847 0.67082 1.74892 1.21792 1.21267 0.96833 1.21293 0.95051 0.98215 0.89493 0.97567 0.89529 0.95337 0.95335 0.89529 0.97561 0.93067 0.92415 0.92419 0.76639 0.84742 0.84465 0.84661 0.83270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.05 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.50 -13.02 8.01 -34.44 -0.28 -13.30 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 6 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 7 N -0.89 -23.26 9.35 55.43 0.52 -22.74 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.72 16 13 N -0.71 -12.43 4.91 -61.24 -0.30 -12.73 16 14 C 0.55 9.61 7.77 -12.32 -0.10 9.52 16 15 O -0.54 -11.48 16.34 5.32 0.09 -11.39 16 16 C -0.13 -1.75 5.87 -105.01 -0.62 -2.36 16 17 C -0.07 -0.71 9.54 -39.14 -0.37 -1.08 16 18 C -0.13 -1.12 10.02 -39.69 -0.40 -1.51 16 19 C -0.06 -0.57 9.69 -39.18 -0.38 -0.95 16 20 C -0.03 -0.38 5.87 -104.94 -0.62 -0.99 16 21 C 0.22 2.62 7.93 -156.30 -1.24 1.38 16 22 N -0.26 -3.37 12.23 32.16 0.39 -2.98 16 23 N -0.05 -0.50 13.47 60.35 0.81 0.32 16 24 N -0.23 -1.60 7.90 60.35 0.48 -1.13 16 25 H 0.48 0.87 8.96 -340.37 -3.05 -2.18 16 26 N -0.30 -2.76 12.07 32.17 0.39 -2.37 16 27 C -0.02 -0.26 9.25 -38.85 -0.36 -0.62 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 29 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.40 6.12 4.19 -40.82 -0.17 5.95 16 38 H 0.13 1.28 6.39 -52.49 -0.34 0.95 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.14 0.98 7.87 -52.48 -0.41 0.57 16 41 H 0.15 2.20 7.47 -52.49 -0.39 1.81 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -31.33 344.82 -8.75 -40.08 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.36 Total: 1.79 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -3.94 Total: -9.60 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 2.29 Total: -41.63 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.33 -8.75 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.267 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds