Wall clock time and date at job start Tue Mar 31 2020 11:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39658 * 120.08543 * 0.02562 * 16 14 13 18 18 C 1.38009 * 120.09091 * 179.97438 * 17 16 14 19 19 C 1.38170 * 120.27019 * 0.02562 * 18 17 16 20 20 C 1.39389 * 120.17434 * 359.97438 * 19 18 17 21 21 C 1.48473 * 120.04479 * 179.97438 * 20 19 18 22 22 N 1.34046 * 126.67025 * 179.68963 * 21 20 19 23 23 N 1.28994 * 107.26756 * 179.83757 * 22 21 20 24 24 N 1.28730 * 108.94111 * 0.43013 * 23 22 21 25 25 H 0.96997 * 125.34489 * 179.75376 * 24 23 22 26 26 N 1.28871 * 109.31534 * 359.72469 * 24 23 22 27 27 C 1.39067 * 119.90514 * 359.70341 * 20 19 18 28 28 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 29 29 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 30 30 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 33 33 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 34 34 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 36 36 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 38 38 H 1.08001 * 119.95290 * 0.02562 * 17 16 14 39 39 H 1.08002 * 119.86646 * 179.97438 * 18 17 16 40 40 H 1.08006 * 119.91442 * 179.97438 * 19 18 17 41 41 H 1.07999 * 120.13318 * 180.29581 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5817 1.3422 4.7507 18 6 0.1216 1.9929 5.8775 19 6 0.4520 1.5258 7.1352 20 6 1.2523 0.3931 7.2740 21 6 1.6060 -0.1060 8.6269 22 7 2.3570 -1.1787 8.9134 23 7 2.4264 -1.2654 10.1985 24 7 1.7474 -0.3037 10.7194 25 1 1.6368 -0.1455 11.6700 26 7 1.2380 0.4162 9.7798 27 6 1.7144 -0.2722 6.1436 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 0.7095 1.1615 -3.4844 35 1 1.6766 -1.7488 1.2494 36 1 3.1299 -0.7208 1.2495 37 1 0.9942 0.7583 2.3564 38 1 0.3201 1.7114 3.7701 39 1 -0.4985 2.8712 5.7758 40 1 0.0891 2.0397 8.0131 41 1 2.3308 -1.1529 6.2469 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589267389.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:19 Heat of formation + Delta-G solvation = 87.522968 kcal Electronic energy + Delta-G solvation = -24989.702665 eV Core-core repulsion = 21292.642111 eV Total energy + Delta-G solvation = -3697.060553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.49879 -41.27803 -39.55613 -38.05619 -35.53228 -35.12143 -34.61744 -32.92305 -32.08563 -31.51136 -27.54385 -27.52931 -26.98621 -25.91931 -25.49165 -24.15436 -22.89755 -21.39360 -20.62193 -20.26383 -19.03768 -18.17639 -17.85139 -17.19978 -16.86742 -16.65353 -16.29339 -16.18376 -15.71030 -15.08734 -14.81807 -14.69781 -14.65767 -14.60891 -13.96127 -13.87982 -13.39810 -13.17873 -13.08813 -12.87293 -12.68080 -12.56160 -12.44666 -12.33825 -12.22962 -12.15987 -12.11490 -11.99405 -11.46265 -11.29875 -10.95528 -10.66874 -10.38371 -10.16556 -9.89975 -9.76702 -8.00787 -6.15681 -0.43430 -0.07117 0.15792 1.18329 1.39577 1.42327 1.46881 1.56032 1.91881 2.20944 2.49067 2.62646 2.84448 3.12996 3.22962 3.69415 3.88944 3.96412 4.12025 4.26195 4.36142 4.42454 4.47730 4.52960 4.66979 4.76229 4.93566 5.01115 5.08477 5.13361 5.22592 5.25610 5.30478 5.32062 5.36975 5.57885 5.60536 5.70128 5.70489 5.76234 6.18751 6.23830 6.45996 6.62937 6.88109 7.08203 7.24986 7.51759 8.98279 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.034538 B = 0.002413 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.511287 B =11598.680810 C =12218.128206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.146 3.854 13 N -0.701 5.701 14 C 0.546 3.454 15 O -0.589 6.589 16 C -0.145 4.145 17 C -0.061 4.061 18 C -0.111 4.111 19 C -0.045 4.045 20 C -0.038 4.038 21 C 0.210 3.790 22 N -0.303 5.303 23 N -0.058 5.058 24 N -0.197 5.197 25 H 0.496 0.504 26 N -0.284 5.284 27 C -0.034 4.034 28 H 0.040 0.960 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.260 0.740 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.410 0.590 38 H 0.151 0.849 39 H 0.180 0.820 40 H 0.164 0.836 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 7.339 25.055 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.471 6.471 16 C -0.148 4.148 17 C -0.080 4.080 18 C -0.128 4.128 19 C -0.065 4.065 20 C -0.042 4.042 21 C -0.070 4.070 22 N -0.175 5.175 23 N -0.053 5.053 24 N -0.048 5.048 25 H 0.355 0.645 26 N -0.136 5.136 27 C -0.056 4.056 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.249 0.751 38 H 0.169 0.831 39 H 0.197 0.803 40 H 0.181 0.819 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.471 6.328 25.403 26.558 hybrid contribution 0.223 -0.315 -0.952 1.028 sum -4.248 6.013 24.451 25.535 Atomic orbital electron populations 1.21689 0.96907 0.98780 1.00624 1.18371 0.93421 0.93126 0.90049 1.21690 0.97985 0.97706 1.00626 1.21288 1.31582 1.12090 0.91589 0.93899 1.25419 0.95199 0.95632 1.00845 1.69900 1.36998 1.23194 1.23522 0.85734 0.78114 0.78721 0.80378 1.20216 1.20733 1.20722 1.21343 0.97173 0.95203 0.84026 1.46002 1.52439 1.31827 1.04948 1.18754 0.79888 0.83717 0.84228 1.90735 1.40444 1.28410 1.87477 1.19731 1.03876 0.99233 0.91989 1.21827 0.92729 0.91921 1.01539 1.21470 1.00105 1.01173 0.90087 1.21676 0.92649 0.92288 0.99902 1.17198 1.03162 0.98462 0.85346 1.23713 0.97212 0.91969 0.94076 1.76173 1.18720 1.18263 1.04343 1.78896 1.12926 1.10646 1.02787 1.47808 1.29207 1.15041 1.12737 0.64464 1.74840 1.21408 1.21004 0.96398 1.21104 0.95853 0.98167 0.90441 0.94113 0.91709 0.96347 0.96348 0.91709 0.94106 0.93016 0.94189 0.94192 0.75121 0.83108 0.80313 0.81883 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.76 8.01 25.60 0.21 -27.56 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 6 C 0.03 1.51 5.15 84.65 0.44 1.95 16 7 N -0.90 -47.12 9.35 21.45 0.20 -46.92 16 8 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.25 4.50 86.38 0.39 6.64 16 13 N -0.70 -24.26 4.91 -465.95 -2.29 -26.55 16 14 C 0.55 19.55 7.77 86.79 0.67 20.23 16 15 O -0.59 -26.24 16.34 -3.88 -0.06 -26.30 16 16 C -0.15 -3.95 5.87 -20.11 -0.12 -4.06 16 17 C -0.06 -1.13 9.54 22.56 0.22 -0.91 16 18 C -0.11 -1.41 10.02 22.20 0.22 -1.19 16 19 C -0.05 -0.66 9.69 22.53 0.22 -0.44 16 20 C -0.04 -0.83 5.87 -20.07 -0.12 -0.95 16 21 C 0.21 4.66 7.93 137.39 1.09 5.75 16 22 N -0.30 -7.81 12.23 -52.18 -0.64 -8.45 16 23 N -0.06 -1.14 13.47 37.02 0.50 -0.64 16 24 N -0.20 -2.34 7.90 37.02 0.29 -2.04 16 25 H 0.50 0.49 8.96 -347.54 -3.12 -2.63 16 26 N -0.28 -4.60 12.07 -52.12 -0.63 -5.23 16 27 C -0.03 -0.94 9.25 22.74 0.21 -0.73 16 28 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 29 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 33 H 0.04 1.43 6.86 -2.39 -0.02 1.41 16 34 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.41 11.76 4.19 -92.71 -0.39 11.37 16 38 H 0.15 2.26 6.39 -2.91 -0.02 2.24 16 39 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 40 H 0.16 1.52 7.87 -2.91 -0.02 1.50 16 41 H 0.12 3.95 7.47 -2.91 -0.02 3.93 16 Total: -1.00 -70.79 344.82 1.56 -69.24 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -2.40 Total: 10.68 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 4.56 Total: -8.39 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -2.56 Total: -89.83 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.06 Total: -26.30 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -70.79 1.56 -69.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267389.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.759 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds