Wall clock time and date at job start Tue Mar 31 2020 11:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47123 * 305.00093 * 3 2 1 5 5 C 1.50703 * 109.47100 * 185.00003 * 3 2 1 6 6 H 1.07996 * 119.99994 * 239.99496 * 5 3 2 7 7 C 1.37878 * 119.99643 * 59.72595 * 5 3 2 8 8 N 1.31506 * 120.00396 * 0.27338 * 7 5 3 9 9 Si 1.86804 * 119.99449 * 180.27426 * 7 5 3 10 10 H 1.48497 * 109.46990 * 89.99950 * 9 7 5 11 11 H 1.48499 * 109.47109 * 209.99738 * 9 7 5 12 12 H 1.48495 * 109.47400 * 329.99752 * 9 7 5 13 13 N 1.46499 * 109.47016 * 65.00132 * 3 2 1 14 14 C 1.34782 * 119.99947 * 274.99897 * 13 3 2 15 15 O 1.21554 * 119.99684 * 0.02562 * 14 13 3 16 16 C 1.47858 * 120.00077 * 180.02562 * 14 13 3 17 17 C 1.39403 * 120.08832 * 353.73665 * 16 14 13 18 18 C 1.39023 * 119.73667 * 179.97438 * 17 16 14 19 19 C 1.48479 * 120.04873 * 179.97438 * 18 17 16 20 20 N 1.34034 * 126.67264 * 359.68657 * 19 18 17 21 21 N 1.28987 * 107.26743 * 179.87211 * 20 19 18 22 22 N 1.28729 * 108.94204 * 0.39895 * 21 20 19 23 23 H 0.97005 * 125.34023 * 179.77049 * 22 21 20 24 24 N 1.28868 * 109.31670 * 359.74525 * 22 21 20 25 25 C 1.39423 * 119.90342 * 359.97438 * 18 17 16 26 26 C 1.38126 * 120.17511 * 0.02803 * 25 18 17 27 27 C 1.38052 * 120.27162 * 359.68954 * 26 25 18 28 28 C 1.50703 * 119.96031 * 180.30419 * 27 26 25 29 29 H 1.08998 * 109.46683 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46924 * 300.00142 * 1 2 3 31 31 H 1.09001 * 109.47068 * 59.99691 * 1 2 3 32 32 H 1.08999 * 109.47604 * 240.00494 * 2 1 3 33 33 H 1.08999 * 109.47271 * 119.99556 * 2 1 3 34 34 H 0.97002 * 120.00426 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00370 * 95.00533 * 13 3 2 36 36 H 1.08010 * 120.13189 * 359.95509 * 17 16 14 37 37 H 1.08010 * 119.91281 * 179.97438 * 25 18 17 38 38 H 1.08004 * 119.86204 * 179.97438 * 26 25 18 39 39 H 1.08997 * 109.46662 * 263.63689 * 28 27 26 40 40 H 1.08992 * 109.46693 * 23.63105 * 28 27 26 41 41 H 1.08990 * 109.47347 * 143.63688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6522 7 6 4.1435 0.8734 -1.2253 8 7 3.4065 0.3321 -2.1704 9 14 6.0055 0.8689 -1.3751 10 1 6.5494 -0.3630 -0.7492 11 1 6.3868 0.9049 -2.8098 12 1 6.5605 2.0610 -0.6853 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3413 2.6319 0.4323 16 6 0.0441 3.3260 2.6302 17 6 0.8780 3.2522 3.7449 18 6 0.5034 3.8774 4.9288 19 6 1.3860 3.8027 6.1205 20 7 2.5633 3.1679 6.2062 21 7 3.0081 3.3460 7.4038 22 7 2.1588 4.0530 8.0641 23 1 2.2548 4.3249 8.9903 24 7 1.1613 4.3431 7.3016 25 6 -0.7021 4.5745 4.9955 26 6 -1.5255 4.6451 3.8887 27 6 -1.1579 4.0319 2.7077 28 6 -2.0583 4.1192 1.5024 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8296 -0.0693 -2.9455 35 1 2.2719 2.1233 1.9977 36 1 1.8112 2.7112 3.6891 37 1 -0.9935 5.0599 5.9154 38 1 -2.4584 5.1862 3.9461 39 1 -2.6783 3.2245 1.4466 40 1 -2.6964 4.9986 1.5886 41 1 -1.4515 4.1976 0.6004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590419218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:07 Heat of formation + Delta-G solvation = 107.769450 kcal Electronic energy + Delta-G solvation = -25759.596246 eV Core-core repulsion = 22063.413646 eV Total energy + Delta-G solvation = -3696.182600 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.60604 -40.07758 -38.16458 -35.25226 -34.57845 -33.89957 -32.71401 -31.69541 -31.51343 -30.31823 -27.59403 -26.72308 -24.95733 -23.73815 -23.48592 -22.82143 -21.41820 -20.18364 -19.36498 -19.29371 -17.71633 -17.29429 -16.22925 -15.74293 -15.42785 -15.07203 -14.94903 -14.62713 -14.17780 -14.05060 -13.58022 -13.45383 -13.06059 -12.65556 -12.47343 -12.37895 -11.97295 -11.90188 -11.76493 -11.50527 -11.45982 -11.30016 -11.22028 -11.18930 -10.93218 -10.85105 -10.77092 -10.25961 -10.14026 -9.58513 -9.03436 -8.99322 -8.86075 -8.55511 -8.46495 -7.77278 -6.08942 -4.17866 0.57034 0.98986 1.11016 2.05357 2.18693 3.28175 3.32646 3.35122 3.37881 3.51502 3.98712 4.07894 4.13288 4.41055 4.79315 4.87387 4.91992 5.16885 5.22739 5.24149 5.37002 5.48396 5.66813 5.77521 5.91862 6.02688 6.12048 6.23173 6.26979 6.36218 6.43287 6.50320 6.64247 6.69797 6.84042 7.09122 7.22840 7.39504 7.47155 7.65905 7.76666 7.93483 7.99016 8.21378 8.67649 8.80471 9.11972 9.49245 10.96311 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.004082 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.842423 B = 6857.950743 C = 8724.909580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.543 3.457 15 O -0.537 6.537 16 C -0.129 4.129 17 C -0.039 4.039 18 C -0.041 4.041 19 C 0.227 3.773 20 N -0.264 5.264 21 N -0.048 5.048 22 N -0.231 5.231 23 H 0.474 0.526 24 N -0.299 5.299 25 C -0.060 4.060 26 C -0.137 4.137 27 C -0.004 4.004 28 C -0.124 4.124 29 H 0.022 0.978 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.389 0.611 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 8.542 18.185 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.347 5.347 14 C 0.329 3.671 15 O -0.417 6.417 16 C -0.132 4.132 17 C -0.060 4.060 18 C -0.044 4.044 19 C -0.053 4.053 20 N -0.137 5.137 21 N -0.044 5.044 22 N -0.077 5.077 23 H 0.328 0.672 24 N -0.151 5.151 25 C -0.080 4.080 26 C -0.155 4.155 27 C -0.006 4.006 28 C -0.179 4.179 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.222 0.778 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.505 8.200 17.634 20.845 hybrid contribution 1.105 0.228 0.885 1.434 sum -6.399 8.428 18.519 21.329 Atomic orbital electron populations 1.21842 0.98331 0.98042 1.01236 1.21944 0.92646 0.99747 1.02365 1.18823 0.94269 0.89196 0.80757 0.93077 1.21246 0.90705 1.38837 1.06437 0.92014 1.24859 0.98534 0.94785 0.95365 1.69887 1.35079 1.37585 1.09445 0.86473 0.84997 0.78513 0.77298 1.20537 1.21129 1.19832 1.46511 1.14351 1.55174 1.18702 1.18013 0.83078 0.79498 0.86550 1.90690 1.51253 1.59651 1.40141 1.20132 0.95908 1.02226 0.94962 1.21398 0.98885 0.95235 0.90499 1.17039 0.94109 1.04290 0.88995 1.23677 0.93143 0.95902 0.92529 1.76161 1.09290 1.19491 1.08709 1.78948 1.16543 1.09015 0.99870 1.47719 1.10664 1.33824 1.15445 0.67196 1.74886 1.13134 1.23880 1.03189 1.21215 0.92046 0.95789 0.98950 1.20950 1.00438 1.02043 0.92036 1.20284 0.93079 0.91633 0.95626 1.21150 0.98571 1.01398 0.96830 0.95926 0.94228 0.93093 0.88219 0.94997 0.92604 0.77784 0.84122 0.84907 0.84844 0.90357 0.92720 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.71 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.74 2.24 -69.08 -0.16 6.58 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.07 8.73 -34.44 -0.30 -14.38 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.57 11.28 55.43 0.63 -23.94 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.70 -14.53 4.97 -55.87 -0.28 -14.80 16 14 C 0.54 10.60 6.27 -12.32 -0.08 10.52 16 15 O -0.54 -11.60 10.47 5.32 0.06 -11.54 16 16 C -0.13 -2.04 5.87 -105.01 -0.62 -2.66 16 17 C -0.04 -0.56 9.17 -38.86 -0.36 -0.92 16 18 C -0.04 -0.53 5.87 -104.94 -0.62 -1.14 16 19 C 0.23 2.90 7.93 -156.31 -1.24 1.66 16 20 N -0.26 -3.65 12.23 32.16 0.39 -3.26 16 21 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 22 N -0.23 -1.87 7.90 60.35 0.48 -1.39 16 23 H 0.47 1.39 8.96 -340.37 -3.05 -1.67 16 24 N -0.30 -3.13 12.07 32.17 0.39 -2.74 16 25 C -0.06 -0.65 9.69 -39.18 -0.38 -1.03 16 26 C -0.14 -1.49 9.64 -39.69 -0.38 -1.87 16 27 C 0.00 -0.06 5.92 -104.17 -0.62 -0.68 16 28 C -0.12 -1.66 8.71 36.01 0.31 -1.34 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.85 5.64 -51.93 -0.29 0.55 16 31 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 32 H 0.10 2.66 5.94 -51.93 -0.31 2.36 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.39 7.28 6.61 -40.82 -0.27 7.01 16 36 H 0.14 2.03 6.27 -52.48 -0.33 1.70 16 37 H 0.13 1.16 7.87 -52.48 -0.41 0.75 16 38 H 0.13 1.08 8.05 -52.48 -0.42 0.65 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.57 8.04 -51.93 -0.42 0.16 16 41 H 0.10 1.68 5.85 -51.93 -0.30 1.38 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -31.35 341.69 -9.17 -40.51 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.42 Total: 5.54 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -4.35 Total: -9.49 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 2.42 Total: -45.88 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.06 Total: -11.54 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.35 -9.17 -40.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.283 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds