Wall clock time and date at job start Tue Mar 31 2020 11:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47107 * 2 1 4 4 H 1.09000 * 109.47123 * 305.00093 * 3 2 1 5 5 C 1.50703 * 109.47100 * 185.00003 * 3 2 1 6 6 H 1.07996 * 119.99994 * 239.99496 * 5 3 2 7 7 C 1.37878 * 119.99643 * 59.72595 * 5 3 2 8 8 N 1.31506 * 120.00396 * 0.27338 * 7 5 3 9 9 Si 1.86804 * 119.99449 * 180.27426 * 7 5 3 10 10 H 1.48497 * 109.46990 * 89.99950 * 9 7 5 11 11 H 1.48499 * 109.47109 * 209.99738 * 9 7 5 12 12 H 1.48495 * 109.47400 * 329.99752 * 9 7 5 13 13 N 1.46499 * 109.47016 * 65.00132 * 3 2 1 14 14 C 1.34782 * 119.99947 * 274.99897 * 13 3 2 15 15 O 1.21554 * 119.99684 * 0.02562 * 14 13 3 16 16 C 1.47858 * 120.00077 * 180.02562 * 14 13 3 17 17 C 1.39403 * 120.08832 * 353.73665 * 16 14 13 18 18 C 1.39023 * 119.73667 * 179.97438 * 17 16 14 19 19 C 1.48479 * 120.04873 * 179.97438 * 18 17 16 20 20 N 1.34034 * 126.67264 * 359.68657 * 19 18 17 21 21 N 1.28987 * 107.26743 * 179.87211 * 20 19 18 22 22 N 1.28729 * 108.94204 * 0.39895 * 21 20 19 23 23 H 0.97005 * 125.34023 * 179.77049 * 22 21 20 24 24 N 1.28868 * 109.31670 * 359.74525 * 22 21 20 25 25 C 1.39423 * 119.90342 * 359.97438 * 18 17 16 26 26 C 1.38126 * 120.17511 * 0.02803 * 25 18 17 27 27 C 1.38052 * 120.27162 * 359.68954 * 26 25 18 28 28 C 1.50703 * 119.96031 * 180.30419 * 27 26 25 29 29 H 1.08998 * 109.46683 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46924 * 300.00142 * 1 2 3 31 31 H 1.09001 * 109.47068 * 59.99691 * 1 2 3 32 32 H 1.08999 * 109.47604 * 240.00494 * 2 1 3 33 33 H 1.08999 * 109.47271 * 119.99556 * 2 1 3 34 34 H 0.97002 * 120.00426 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00370 * 95.00533 * 13 3 2 36 36 H 1.08010 * 120.13189 * 359.95509 * 17 16 14 37 37 H 1.08010 * 119.91281 * 179.97438 * 25 18 17 38 38 H 1.08004 * 119.86204 * 179.97438 * 26 25 18 39 39 H 1.08997 * 109.46662 * 263.63689 * 28 27 26 40 40 H 1.08992 * 109.46693 * 23.63105 * 28 27 26 41 41 H 1.08990 * 109.47347 * 143.63688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6522 7 6 4.1435 0.8734 -1.2253 8 7 3.4065 0.3321 -2.1704 9 14 6.0055 0.8689 -1.3751 10 1 6.5494 -0.3630 -0.7492 11 1 6.3868 0.9049 -2.8098 12 1 6.5605 2.0610 -0.6853 13 7 1.6525 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3413 2.6319 0.4323 16 6 0.0441 3.3260 2.6302 17 6 0.8780 3.2522 3.7449 18 6 0.5034 3.8774 4.9288 19 6 1.3860 3.8027 6.1205 20 7 2.5633 3.1679 6.2062 21 7 3.0081 3.3460 7.4038 22 7 2.1588 4.0530 8.0641 23 1 2.2548 4.3249 8.9903 24 7 1.1613 4.3431 7.3016 25 6 -0.7021 4.5745 4.9955 26 6 -1.5255 4.6451 3.8887 27 6 -1.1579 4.0319 2.7077 28 6 -2.0583 4.1192 1.5024 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8296 -0.0693 -2.9455 35 1 2.2719 2.1233 1.9977 36 1 1.8112 2.7112 3.6891 37 1 -0.9935 5.0599 5.9154 38 1 -2.4584 5.1862 3.9461 39 1 -2.6783 3.2245 1.4466 40 1 -2.6964 4.9986 1.5886 41 1 -1.4515 4.1976 0.6004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:06 Heat of formation + Delta-G solvation = 86.864509 kcal Electronic energy + Delta-G solvation = -25760.502752 eV Core-core repulsion = 22063.413646 eV Total energy + Delta-G solvation = -3697.089106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.46101 -41.37166 -39.51434 -36.98830 -35.53871 -34.86556 -34.43240 -33.23050 -32.65880 -31.74787 -29.06137 -28.22438 -25.90320 -25.18975 -24.62081 -24.22665 -22.64723 -21.60365 -21.07091 -20.20695 -19.17295 -18.13779 -17.87831 -17.27228 -16.68211 -16.44279 -16.40005 -16.04044 -15.66653 -15.09459 -14.84737 -14.56087 -14.51231 -14.44813 -13.67823 -13.42648 -13.37171 -13.35598 -13.16315 -13.02883 -12.81495 -12.74780 -12.61699 -12.38473 -12.29176 -12.15695 -12.10492 -12.03118 -11.76999 -11.54754 -11.02611 -10.53978 -10.39051 -10.04164 -9.65678 -9.44401 -8.14496 -6.31073 -0.37644 -0.03043 0.18792 1.22178 1.42999 1.45351 1.45506 1.56068 2.07726 2.36610 2.57958 2.67832 2.86741 3.14596 3.15805 3.81917 3.83679 3.88972 4.13791 4.30034 4.35855 4.47742 4.52936 4.60806 4.68039 4.77664 4.79291 4.91310 4.94287 5.10985 5.16178 5.28074 5.31135 5.35468 5.47190 5.54729 5.61116 5.63251 5.68664 5.81772 5.84992 5.95345 6.19720 6.76091 6.99072 7.12126 7.34894 7.56231 8.90667 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.004082 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.842423 B = 6857.950743 C = 8724.909580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.704 5.704 14 C 0.540 3.460 15 O -0.564 6.564 16 C -0.150 4.150 17 C -0.045 4.045 18 C -0.044 4.044 19 C 0.213 3.787 20 N -0.300 5.300 21 N -0.058 5.058 22 N -0.198 5.198 23 H 0.495 0.505 24 N -0.286 5.286 25 C -0.043 4.043 26 C -0.120 4.120 27 C -0.013 4.013 28 C -0.119 4.119 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.265 0.735 35 H 0.398 0.602 36 H 0.131 0.869 37 H 0.164 0.836 38 H 0.174 0.826 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 9.993 21.287 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.791 3.209 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.352 5.352 14 C 0.328 3.672 15 O -0.446 6.446 16 C -0.154 4.154 17 C -0.066 4.066 18 C -0.047 4.047 19 C -0.067 4.067 20 N -0.172 5.172 21 N -0.053 5.053 22 N -0.049 5.049 23 H 0.354 0.646 24 N -0.139 5.139 25 C -0.063 4.063 26 C -0.138 4.138 27 C -0.015 4.015 28 C -0.175 4.175 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.233 0.767 36 H 0.149 0.851 37 H 0.182 0.818 38 H 0.191 0.809 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.126 9.662 20.786 24.320 hybrid contribution 1.237 -0.131 0.069 1.246 sum -6.889 9.531 20.855 23.942 Atomic orbital electron populations 1.21667 0.96728 0.99118 1.00423 1.21790 0.93999 0.99093 1.01153 1.18383 0.93515 0.89197 0.81140 0.97695 1.21570 0.91600 1.38878 1.06773 0.91577 1.25688 1.03042 0.94346 0.94982 1.70028 1.36894 1.38197 1.09905 0.85433 0.79483 0.78760 0.77202 1.19762 1.20967 1.19239 1.46295 1.15448 1.55798 1.17673 1.18611 0.82067 0.78758 0.87757 1.90680 1.51802 1.60482 1.41614 1.19800 0.97848 1.04273 0.93444 1.21277 0.98488 0.95886 0.90966 1.17144 0.94964 1.04167 0.88421 1.23672 0.93164 0.96705 0.93180 1.76150 1.10275 1.20837 1.09891 1.78896 1.17028 1.09774 0.99595 1.47798 1.09266 1.31766 1.16081 0.64552 1.74837 1.13339 1.23206 1.02499 1.21579 0.90601 0.94077 0.99998 1.21302 1.01504 1.00599 0.90346 1.20446 0.92276 0.91825 0.96958 1.21047 0.98377 1.02704 0.95356 0.93756 0.93843 0.95018 0.90809 0.94548 0.92566 0.76720 0.85090 0.81827 0.80879 0.90986 0.89234 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.51 71.98 0.61 -4.94 16 2 C -0.12 -6.11 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.69 2.24 44.25 0.10 14.79 16 4 H 0.01 0.31 7.58 -2.39 -0.02 0.30 16 5 C -0.55 -29.94 8.73 25.60 0.22 -29.72 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.53 11.28 21.45 0.24 -52.28 16 9 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.70 -30.65 4.97 -448.94 -2.23 -32.88 16 14 C 0.54 22.05 6.27 86.79 0.54 22.59 16 15 O -0.56 -25.75 10.47 -3.89 -0.04 -25.79 16 16 C -0.15 -4.80 5.87 -20.12 -0.12 -4.91 16 17 C -0.05 -1.29 9.17 22.74 0.21 -1.08 16 18 C -0.04 -1.04 5.87 -20.07 -0.12 -1.15 16 19 C 0.21 5.00 7.93 137.39 1.09 6.09 16 20 N -0.30 -8.00 12.23 -52.18 -0.64 -8.64 16 21 N -0.06 -1.23 13.47 37.02 0.50 -0.73 16 22 N -0.20 -2.65 7.90 37.02 0.29 -2.36 16 23 H 0.50 1.26 8.96 -347.53 -3.12 -1.85 16 24 N -0.29 -5.09 12.07 -52.13 -0.63 -5.71 16 25 C -0.04 -0.76 9.69 22.53 0.22 -0.54 16 26 C -0.12 -2.15 9.64 22.20 0.21 -1.94 16 27 C -0.01 -0.34 5.92 -19.57 -0.12 -0.46 16 28 C -0.12 -3.10 8.71 71.24 0.62 -2.48 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.92 5.64 -2.39 -0.01 1.90 16 31 H 0.03 1.53 7.84 -2.39 -0.02 1.51 16 32 H 0.07 4.12 5.94 -2.39 -0.01 4.11 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.40 15.63 6.61 -92.71 -0.61 15.01 16 36 H 0.13 3.91 6.27 -2.91 -0.02 3.89 16 37 H 0.16 1.98 7.87 -2.91 -0.02 1.95 16 38 H 0.17 1.78 8.05 -2.91 -0.02 1.76 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 1.65 8.04 -2.39 -0.02 1.63 16 41 H 0.07 2.31 5.85 -2.39 -0.01 2.29 16 Total: -1.00 -71.18 341.69 0.99 -70.19 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -2.62 Total: 21.23 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 4.09 Total: -8.17 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -2.47 Total: -102.60 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.18 0.99 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.054 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds