Wall clock time and date at job start Tue Mar 31 2020 11:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 N 1.46497 * 109.47192 * 119.99924 * 2 1 3 5 5 C 1.46508 * 119.99893 * 113.99343 * 4 2 1 6 6 C 1.50704 * 109.46559 * 89.99974 * 5 4 2 7 7 C 1.38313 * 119.87747 * 90.00417 * 6 5 4 8 8 C 1.38037 * 120.11402 * 180.02562 * 7 6 5 9 9 C 1.39292 * 119.88244 * 359.97438 * 8 7 6 10 10 C 1.48464 * 120.11611 * 179.97438 * 9 8 7 11 11 N 1.34044 * 126.67431 * 0.02562 * 10 9 8 12 12 N 1.28985 * 107.26697 * 179.97438 * 11 10 9 13 13 N 1.28726 * 108.94515 * 359.97438 * 12 11 10 14 14 H 0.97003 * 125.34524 * 179.97438 * 13 12 11 15 15 N 1.28870 * 109.32206 * 0.02562 * 13 12 11 16 16 C 1.39301 * 119.76828 * 0.24451 * 9 8 7 17 17 C 1.38032 * 119.87724 * 359.49822 * 16 9 8 18 18 C 1.34775 * 120.00493 * 293.99866 * 4 2 1 19 19 O 1.21687 * 120.00592 * 185.18832 * 18 4 2 20 20 C 1.46373 * 119.99508 * 5.18473 * 18 4 2 21 21 H 1.08005 * 120.00381 * 4.86679 * 20 18 4 22 22 C 1.40050 * 120.00131 * 184.85949 * 20 18 4 23 23 N 1.30676 * 119.99689 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00382 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47128 * 59.99683 * 24 22 20 26 26 H 1.48506 * 109.47123 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46876 * 299.99797 * 24 22 20 28 28 H 1.08996 * 109.47296 * 304.52946 * 1 2 3 29 29 H 1.08996 * 109.47363 * 64.53544 * 1 2 3 30 30 H 1.09004 * 109.46974 * 184.53198 * 1 2 3 31 31 H 1.09003 * 109.46841 * 240.00332 * 2 1 3 32 32 H 1.09001 * 109.47247 * 174.85388 * 3 2 1 33 33 H 1.09000 * 109.47086 * 294.85675 * 3 2 1 34 34 H 1.09001 * 109.47085 * 54.85787 * 3 2 1 35 35 H 1.08997 * 109.46945 * 330.00924 * 5 4 2 36 36 H 1.08987 * 109.47184 * 209.99882 * 5 4 2 37 37 H 1.08000 * 119.94554 * 359.97438 * 7 6 5 38 38 H 1.08006 * 120.05495 * 179.97438 * 8 7 6 39 39 H 1.07993 * 120.06396 * 179.75325 * 16 9 8 40 40 H 1.08002 * 119.94215 * 180.22522 * 17 16 9 41 41 H 0.97002 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7490 -1.9538 1.0657 6 6 4.2233 -1.6700 0.9351 7 6 5.0137 -1.5962 2.0678 8 6 6.3645 -1.3361 1.9539 9 6 6.9314 -1.1483 0.6955 10 6 8.3836 -0.8677 0.5670 11 7 9.2710 -0.7665 1.5665 12 7 10.4195 -0.5171 1.0351 13 7 10.2847 -0.4599 -0.2438 14 1 10.9992 -0.2849 -0.8761 15 7 9.0513 -0.6705 -0.5524 16 6 6.1300 -1.2192 -0.4417 17 6 4.7813 -1.4852 -0.3169 18 6 1.7955 -0.1640 2.4166 19 8 2.2811 -0.6862 3.4026 20 6 0.9693 1.0362 2.5560 21 1 0.4741 1.4543 1.6920 22 6 0.8207 1.6423 3.8097 23 7 1.4201 1.1367 4.8550 24 14 -0.2343 3.1736 3.9878 25 1 -1.6260 2.8672 3.5703 26 1 -0.2283 3.6168 5.4052 27 1 0.3134 4.2546 3.1294 28 1 -0.3634 0.5825 0.8466 29 1 -0.3634 0.4418 -0.9278 30 1 -0.3633 -1.0245 0.0812 31 1 1.8933 -0.5138 -0.8901 32 1 3.1261 1.4440 0.0922 33 1 1.7538 1.9290 -0.9325 34 1 1.6034 1.9822 0.8404 35 1 2.4014 -2.4847 0.1795 36 1 2.5740 -2.5676 1.9491 37 1 4.5731 -1.7415 3.0431 38 1 6.9808 -1.2782 2.8390 39 1 6.5638 -1.0704 -1.4194 40 1 4.1596 -1.5439 -1.1981 41 1 1.3169 1.5563 5.7235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609098881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:21 Heat of formation + Delta-G solvation = 126.751108 kcal Electronic energy + Delta-G solvation = -25973.754948 eV Core-core repulsion = 22278.395455 eV Total energy + Delta-G solvation = -3695.359493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.46577 -39.28094 -37.92660 -34.79069 -34.45941 -33.79629 -32.75106 -31.70909 -30.66514 -29.49513 -26.91592 -26.31556 -25.50685 -24.70389 -23.17082 -22.23480 -21.34544 -20.79349 -19.21262 -18.55249 -17.16101 -16.86098 -16.61417 -15.53755 -15.19691 -14.84232 -14.66191 -14.15950 -13.93296 -13.59511 -13.12450 -13.06807 -12.75568 -12.63881 -12.49075 -12.28657 -11.94252 -11.80534 -11.41407 -11.36993 -11.31652 -11.25325 -11.14432 -11.04289 -10.86699 -10.80652 -10.65904 -10.39059 -10.35496 -10.22773 -9.05885 -8.82532 -8.61436 -8.32745 -7.54629 -7.25907 -6.18800 -4.59521 0.82367 1.23309 1.74810 2.18275 2.48358 3.14252 3.20684 3.20818 3.73806 4.00050 4.15046 4.22596 4.56490 4.66061 5.17047 5.20815 5.27367 5.40966 5.47359 5.64921 5.67619 5.72630 5.79091 5.97673 6.01894 6.08018 6.21438 6.29056 6.30622 6.35696 6.40585 6.50635 6.56528 6.64728 6.73517 6.78902 7.04712 7.06514 7.21980 7.27451 7.50013 7.72150 8.12023 8.12463 8.37910 9.02602 9.43376 10.58661 10.77327 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.003546 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.774786 B = 7895.089545 C = 8513.281845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.162 3.838 3 C -0.183 4.183 4 N -0.634 5.634 5 C 0.158 3.842 6 C -0.060 4.060 7 C -0.090 4.090 8 C -0.077 4.077 9 C -0.039 4.039 10 C 0.234 3.766 11 N -0.269 5.269 12 N -0.055 5.055 13 N -0.233 5.233 14 H 0.473 0.527 15 N -0.302 5.302 16 C -0.085 4.085 17 C -0.118 4.118 18 C 0.564 3.436 19 O -0.574 6.574 20 C -0.549 4.549 21 H 0.093 0.907 22 C 0.087 3.913 23 N -0.765 5.765 24 Si 0.897 3.103 25 H -0.267 1.267 26 H -0.281 1.281 27 H -0.268 1.268 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.460 -3.028 -12.806 16.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.057 3.943 3 C -0.241 4.241 4 N -0.371 5.371 5 C 0.034 3.966 6 C -0.063 4.063 7 C -0.109 4.109 8 C -0.097 4.097 9 C -0.043 4.043 10 C -0.046 4.046 11 N -0.142 5.142 12 N -0.050 5.050 13 N -0.079 5.079 14 H 0.326 0.674 15 N -0.153 5.153 16 C -0.106 4.106 17 C -0.137 4.137 18 C 0.370 3.630 19 O -0.456 6.456 20 C -0.585 4.585 21 H 0.110 0.890 22 C -0.133 4.133 23 N -0.394 5.394 24 Si 0.722 3.278 25 H -0.192 1.192 26 H -0.206 1.206 27 H -0.192 1.192 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.373 -3.207 -11.803 16.038 hybrid contribution -0.307 0.982 -0.681 1.234 sum 10.066 -2.225 -12.484 16.191 Atomic orbital electron populations 1.22546 0.96530 1.02061 1.02490 1.20506 0.93339 0.93036 0.87388 1.22618 1.01307 0.97350 1.02780 1.48278 1.58813 1.22972 1.07066 1.20063 0.86057 0.88754 1.01731 1.20826 0.97435 0.95336 0.92694 1.21299 0.92210 0.97422 0.99950 1.21180 0.95484 0.97157 0.95903 1.17180 0.84618 1.07422 0.95033 1.23849 0.96898 0.99935 0.83881 1.76113 0.94804 1.17151 1.26140 1.78885 1.19402 1.14739 0.91993 1.47695 1.07886 1.45233 1.07050 0.67357 1.74930 0.91949 1.21771 1.26671 1.20971 0.93583 0.98811 0.97210 1.20912 0.94169 1.01316 0.97302 1.18158 0.80561 0.84544 0.79776 1.90574 1.54814 1.63547 1.36672 1.21431 1.31211 1.10974 0.94889 0.88975 1.25743 0.94512 0.97390 0.95606 1.69999 1.33942 1.35914 0.99546 0.86595 0.80979 0.82347 0.77891 1.19234 1.20616 1.19247 0.88929 0.93722 0.93549 0.92527 0.93542 0.94103 0.87798 0.91830 0.89918 0.84002 0.85168 0.85705 0.85911 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.07 37.16 0.34 -2.67 16 2 C 0.16 2.87 3.26 -67.93 -0.22 2.65 16 3 C -0.18 -3.31 8.85 37.16 0.33 -2.98 16 4 N -0.63 -13.26 2.41 -169.12 -0.41 -13.67 16 5 C 0.16 2.86 5.44 -5.19 -0.03 2.83 16 6 C -0.06 -1.03 5.47 -104.56 -0.57 -1.61 16 7 C -0.09 -1.66 9.54 -39.63 -0.38 -2.03 16 8 C -0.08 -1.29 9.70 -39.26 -0.38 -1.67 16 9 C -0.04 -0.61 5.88 -104.90 -0.62 -1.22 16 10 C 0.23 3.47 7.94 -156.30 -1.24 2.23 16 11 N -0.27 -4.11 12.23 32.16 0.39 -3.71 16 12 N -0.05 -0.69 13.47 60.35 0.81 0.12 16 13 N -0.23 -2.23 7.90 60.35 0.48 -1.75 16 14 H 0.47 1.99 8.96 -340.37 -3.05 -1.06 16 15 N -0.30 -3.76 12.08 32.17 0.39 -3.37 16 16 C -0.09 -1.22 9.70 -39.26 -0.38 -1.60 16 17 C -0.12 -1.73 9.68 -39.63 -0.38 -2.12 16 18 C 0.56 14.75 7.14 -12.99 -0.09 14.65 16 19 O -0.57 -17.04 13.83 5.20 0.07 -16.97 16 20 C -0.55 -14.18 6.38 -35.63 -0.23 -14.41 16 21 H 0.09 2.15 3.07 -52.48 -0.16 1.99 16 22 C 0.09 2.31 5.50 -17.36 -0.10 2.21 16 23 N -0.77 -21.97 11.84 55.55 0.66 -21.31 16 24 Si 0.90 19.34 29.56 -169.99 -5.02 14.31 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 28 H 0.09 1.79 4.80 -51.93 -0.25 1.54 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.86 7.85 -51.93 -0.41 0.45 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 2.15 4.43 -51.93 -0.23 1.92 16 35 H 0.06 0.95 7.91 -51.93 -0.41 0.53 16 36 H 0.08 1.63 7.44 -51.94 -0.39 1.25 16 37 H 0.14 2.91 7.36 -52.49 -0.39 2.53 16 38 H 0.13 2.09 7.89 -52.48 -0.41 1.67 16 39 H 0.12 1.53 7.88 -52.49 -0.41 1.12 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.27 7.09 8.29 -40.82 -0.34 6.76 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -33.17 344.70 -8.74 -41.92 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.36 Total: 4.95 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.95 Total: -5.73 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 2.32 Total: -43.69 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.07 Total: -16.97 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.17 -8.74 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609098881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.670 kcal (2) G-P(sol) polarization free energy of solvation -33.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds