Wall clock time and date at job start Tue Mar 31 2020 11:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 N 1.46497 * 109.47192 * 119.99924 * 2 1 3 5 5 C 1.46508 * 119.99893 * 113.99343 * 4 2 1 6 6 C 1.50704 * 109.46559 * 89.99974 * 5 4 2 7 7 C 1.38313 * 119.87747 * 90.00417 * 6 5 4 8 8 C 1.38037 * 120.11402 * 180.02562 * 7 6 5 9 9 C 1.39292 * 119.88244 * 359.97438 * 8 7 6 10 10 C 1.48464 * 120.11611 * 179.97438 * 9 8 7 11 11 N 1.34044 * 126.67431 * 0.02562 * 10 9 8 12 12 N 1.28985 * 107.26697 * 179.97438 * 11 10 9 13 13 N 1.28726 * 108.94515 * 359.97438 * 12 11 10 14 14 H 0.97003 * 125.34524 * 179.97438 * 13 12 11 15 15 N 1.28870 * 109.32206 * 0.02562 * 13 12 11 16 16 C 1.39301 * 119.76828 * 0.24451 * 9 8 7 17 17 C 1.38032 * 119.87724 * 359.49822 * 16 9 8 18 18 C 1.34775 * 120.00493 * 293.99866 * 4 2 1 19 19 O 1.21687 * 120.00592 * 185.18832 * 18 4 2 20 20 C 1.46373 * 119.99508 * 5.18473 * 18 4 2 21 21 H 1.08005 * 120.00381 * 4.86679 * 20 18 4 22 22 C 1.40050 * 120.00131 * 184.85949 * 20 18 4 23 23 N 1.30676 * 119.99689 * 0.02562 * 22 20 18 24 24 Si 1.86798 * 120.00382 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47128 * 59.99683 * 24 22 20 26 26 H 1.48506 * 109.47123 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.46876 * 299.99797 * 24 22 20 28 28 H 1.08996 * 109.47296 * 304.52946 * 1 2 3 29 29 H 1.08996 * 109.47363 * 64.53544 * 1 2 3 30 30 H 1.09004 * 109.46974 * 184.53198 * 1 2 3 31 31 H 1.09003 * 109.46841 * 240.00332 * 2 1 3 32 32 H 1.09001 * 109.47247 * 174.85388 * 3 2 1 33 33 H 1.09000 * 109.47086 * 294.85675 * 3 2 1 34 34 H 1.09001 * 109.47085 * 54.85787 * 3 2 1 35 35 H 1.08997 * 109.46945 * 330.00924 * 5 4 2 36 36 H 1.08987 * 109.47184 * 209.99882 * 5 4 2 37 37 H 1.08000 * 119.94554 * 359.97438 * 7 6 5 38 38 H 1.08006 * 120.05495 * 179.97438 * 8 7 6 39 39 H 1.07993 * 120.06396 * 179.75325 * 16 9 8 40 40 H 1.08002 * 119.94215 * 180.22522 * 17 16 9 41 41 H 0.97002 * 119.99973 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7490 -1.9538 1.0657 6 6 4.2233 -1.6700 0.9351 7 6 5.0137 -1.5962 2.0678 8 6 6.3645 -1.3361 1.9539 9 6 6.9314 -1.1483 0.6955 10 6 8.3836 -0.8677 0.5670 11 7 9.2710 -0.7665 1.5665 12 7 10.4195 -0.5171 1.0351 13 7 10.2847 -0.4599 -0.2438 14 1 10.9992 -0.2849 -0.8761 15 7 9.0513 -0.6705 -0.5524 16 6 6.1300 -1.2192 -0.4417 17 6 4.7813 -1.4852 -0.3169 18 6 1.7955 -0.1640 2.4166 19 8 2.2811 -0.6862 3.4026 20 6 0.9693 1.0362 2.5560 21 1 0.4741 1.4543 1.6920 22 6 0.8207 1.6423 3.8097 23 7 1.4201 1.1367 4.8550 24 14 -0.2343 3.1736 3.9878 25 1 -1.6260 2.8672 3.5703 26 1 -0.2283 3.6168 5.4052 27 1 0.3134 4.2546 3.1294 28 1 -0.3634 0.5825 0.8466 29 1 -0.3634 0.4418 -0.9278 30 1 -0.3633 -1.0245 0.0812 31 1 1.8933 -0.5138 -0.8901 32 1 3.1261 1.4440 0.0922 33 1 1.7538 1.9290 -0.9325 34 1 1.6034 1.9822 0.8404 35 1 2.4014 -2.4847 0.1795 36 1 2.5740 -2.5676 1.9491 37 1 4.5731 -1.7415 3.0431 38 1 6.9808 -1.2782 2.8390 39 1 6.5638 -1.0704 -1.4194 40 1 4.1596 -1.5439 -1.1981 41 1 1.3169 1.5563 5.7235 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609098881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:21 Heat of formation + Delta-G solvation = 104.720214 kcal Electronic energy + Delta-G solvation = -25974.710279 eV Core-core repulsion = 22278.395455 eV Total energy + Delta-G solvation = -3696.314825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.47977 -40.68666 -39.50310 -36.59222 -35.56592 -35.01020 -34.52043 -33.12480 -31.91968 -30.91929 -28.73869 -27.71043 -26.99076 -25.74485 -24.43064 -23.53058 -22.89786 -22.04433 -20.28435 -20.19012 -18.68656 -18.15886 -17.85298 -17.18592 -16.59390 -16.33353 -16.16275 -15.67665 -15.21830 -14.91671 -14.61900 -14.37874 -14.31146 -14.10185 -13.89345 -13.62615 -13.40240 -13.26674 -13.06954 -12.80953 -12.70816 -12.59615 -12.43585 -12.40308 -12.31725 -12.09114 -12.03660 -11.82332 -11.81872 -11.71173 -10.81094 -10.68621 -9.87218 -9.76099 -9.41301 -8.96038 -8.16048 -6.61960 -0.30184 0.16089 0.49088 1.29506 1.41750 1.42726 1.44722 1.54460 2.28714 2.59341 2.65066 2.73776 3.15620 3.17426 3.73345 3.94679 4.01190 4.07314 4.21980 4.29137 4.37059 4.42916 4.52043 4.59496 4.65693 4.76178 4.90113 4.96282 5.04603 5.07218 5.16323 5.19083 5.28487 5.40051 5.42421 5.46667 5.62399 5.72622 5.73921 5.78647 5.98287 6.06691 6.29389 6.61358 7.02528 7.09708 7.59714 8.63718 8.83029 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.003546 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.774786 B = 7895.089545 C = 8513.281845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.154 3.846 3 C -0.177 4.177 4 N -0.633 5.633 5 C 0.158 3.842 6 C -0.074 4.074 7 C -0.113 4.113 8 C -0.088 4.088 9 C -0.038 4.038 10 C 0.216 3.784 11 N -0.302 5.302 12 N -0.058 5.058 13 N -0.198 5.198 14 H 0.495 0.505 15 N -0.289 5.289 16 C -0.075 4.075 17 C -0.104 4.104 18 C 0.549 3.451 19 O -0.624 6.624 20 C -0.562 4.562 21 H 0.118 0.882 22 C 0.029 3.971 23 N -0.824 5.824 24 Si 0.975 3.025 25 H -0.253 1.253 26 H -0.284 1.284 27 H -0.254 1.254 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.124 0.876 39 H 0.156 0.844 40 H 0.160 0.840 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.535 -1.963 -17.420 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.051 3.949 3 C -0.235 4.235 4 N -0.369 5.369 5 C 0.034 3.966 6 C -0.076 4.076 7 C -0.132 4.132 8 C -0.108 4.108 9 C -0.041 4.041 10 C -0.064 4.064 11 N -0.174 5.174 12 N -0.052 5.052 13 N -0.049 5.049 14 H 0.355 0.645 15 N -0.142 5.142 16 C -0.095 4.095 17 C -0.122 4.122 18 C 0.355 3.645 19 O -0.511 6.511 20 C -0.598 4.598 21 H 0.135 0.865 22 C -0.186 4.186 23 N -0.455 5.455 24 Si 0.795 3.205 25 H -0.177 1.177 26 H -0.209 1.209 27 H -0.178 1.178 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.142 0.858 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.465 -2.146 -16.487 19.646 hybrid contribution -0.169 0.598 0.601 0.864 sum 10.296 -1.548 -15.886 18.994 Atomic orbital electron populations 1.22448 0.95737 1.01881 1.02983 1.20857 0.94022 0.92935 0.87101 1.22506 1.00024 0.97575 1.03349 1.48120 1.58407 1.23632 1.06722 1.20176 0.86797 0.87471 1.02135 1.20745 0.96674 0.96734 0.93485 1.21065 0.93318 0.99797 0.99042 1.21089 0.94753 0.98089 0.96878 1.17295 0.85537 1.06536 0.94770 1.23722 0.96734 1.01394 0.84513 1.76112 0.95618 1.18424 1.27265 1.78835 1.18524 1.14977 0.92908 1.47770 1.07794 1.42527 1.06824 0.64534 1.74867 0.92605 1.21088 1.25598 1.21298 0.93234 0.97127 0.97850 1.21200 0.94699 0.99368 0.96952 1.18509 0.80357 0.84830 0.80851 1.90544 1.56459 1.64966 1.39113 1.22021 1.30949 1.10930 0.95873 0.86491 1.26879 0.95616 1.00893 0.95167 1.70211 1.36658 1.38316 1.00268 0.85401 0.79406 0.77916 0.77736 1.17691 1.20903 1.17820 0.91968 0.90091 0.93494 0.88469 0.95057 0.90334 0.90934 0.87538 0.93188 0.88054 0.85833 0.82641 0.82226 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 9.07 71.98 0.65 -4.65 16 2 C 0.15 5.00 3.26 44.99 0.15 5.15 16 3 C -0.18 -5.95 8.85 71.98 0.64 -5.31 16 4 N -0.63 -26.43 2.41 -807.20 -1.94 -28.37 16 5 C 0.16 5.71 5.44 85.63 0.47 6.17 16 6 C -0.07 -2.54 5.47 -19.83 -0.11 -2.65 16 7 C -0.11 -4.48 9.54 22.24 0.21 -4.27 16 8 C -0.09 -3.11 9.70 22.48 0.22 -2.89 16 9 C -0.04 -1.15 5.88 -20.04 -0.12 -1.27 16 10 C 0.22 6.13 7.94 137.38 1.09 7.22 16 11 N -0.30 -9.10 12.23 -52.18 -0.64 -9.73 16 12 N -0.06 -1.36 13.47 37.02 0.50 -0.86 16 13 N -0.20 -3.23 7.90 37.02 0.29 -2.94 16 14 H 0.50 2.49 8.96 -347.54 -3.12 -0.63 16 15 N -0.29 -6.37 12.08 -52.13 -0.63 -7.00 16 16 C -0.08 -1.92 9.70 22.48 0.22 -1.70 16 17 C -0.10 -2.73 9.68 22.24 0.22 -2.52 16 18 C 0.55 29.94 7.14 86.36 0.62 30.55 16 19 O -0.62 -39.89 13.83 -4.31 -0.06 -39.94 16 20 C -0.56 -29.73 6.38 24.83 0.16 -29.57 16 21 H 0.12 5.44 3.07 -2.91 -0.01 5.43 16 22 C 0.03 1.57 5.50 85.30 0.47 2.04 16 23 N -0.82 -50.10 11.84 21.84 0.26 -49.84 16 24 Si 0.97 40.42 29.56 68.60 2.03 42.45 16 25 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 28 H 0.06 2.31 4.80 -2.39 -0.01 2.30 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.10 2.41 7.85 -2.39 -0.02 2.40 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.92 4.43 -2.39 -0.01 2.91 16 35 H 0.11 2.88 7.91 -2.39 -0.02 2.86 16 36 H 0.05 2.11 7.44 -2.39 -0.02 2.10 16 37 H 0.10 4.76 7.36 -2.91 -0.02 4.74 16 38 H 0.12 4.37 7.89 -2.91 -0.02 4.35 16 39 H 0.16 3.05 7.88 -2.91 -0.02 3.03 16 40 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.27 15.05 8.29 -92.71 -0.77 14.28 16 Total: -1.00 -78.77 344.70 2.66 -76.10 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -2.02 Total: 23.82 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 4.87 Total: -3.69 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -2.16 Total: -98.74 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.06 Total: -39.94 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -78.77 2.66 -76.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609098881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.824 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds