Wall clock time and date at job start Tue Mar 31 2020 11:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47388 * 2 1 4 4 H 1.08999 * 109.46614 * 55.00517 * 3 2 1 5 5 C 1.50699 * 109.47010 * 175.00283 * 3 2 1 6 6 H 1.07998 * 119.99878 * 120.00699 * 5 3 2 7 7 C 1.37879 * 120.00152 * 299.99888 * 5 3 2 8 8 N 1.31518 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00296 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47031 * 60.00277 * 9 7 5 11 11 H 1.48501 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47210 * 300.00387 * 9 7 5 13 13 N 1.46492 * 109.47171 * 295.00496 * 3 2 1 14 14 C 1.34777 * 120.00030 * 84.71999 * 13 3 2 15 15 O 1.21552 * 120.00351 * 0.27684 * 14 13 3 16 16 C 1.47866 * 119.99658 * 180.27217 * 14 13 3 17 17 C 1.39644 * 120.09009 * 353.79048 * 16 14 13 18 18 C 1.38015 * 120.09390 * 180.02562 * 17 16 14 19 19 C 1.38179 * 120.26739 * 0.02562 * 18 17 16 20 20 C 1.39384 * 120.17120 * 0.02562 * 19 18 17 21 21 C 1.48478 * 120.04655 * 179.97438 * 20 19 18 22 22 N 1.34038 * 126.67678 * 179.68687 * 21 20 19 23 23 N 1.28988 * 107.26980 * 179.87329 * 22 21 20 24 24 N 1.28725 * 108.94412 * 0.40464 * 23 22 21 25 25 H 0.97001 * 125.34556 * 179.74797 * 24 23 22 26 26 N 1.28873 * 109.31478 * 359.74199 * 24 23 22 27 27 C 1.39067 * 119.91014 * 359.68735 * 20 19 18 28 28 C 1.50692 * 120.13643 * 180.31370 * 27 20 19 29 29 H 1.09006 * 109.47019 * 299.99596 * 1 2 3 30 30 H 1.08995 * 109.47302 * 59.99276 * 1 2 3 31 31 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47019 * 240.00404 * 2 1 3 33 33 H 1.08995 * 109.47302 * 120.00724 * 2 1 3 34 34 H 0.97003 * 120.00263 * 180.02562 * 8 7 5 35 35 H 0.97006 * 120.00253 * 264.99659 * 13 3 2 36 36 H 1.07996 * 119.95942 * 0.02562 * 17 16 14 37 37 H 1.07991 * 119.87342 * 180.02562 * 18 17 16 38 38 H 1.07994 * 119.91180 * 180.02562 * 19 18 17 39 39 H 1.08994 * 109.47693 * 266.52519 * 28 27 20 40 40 H 1.09001 * 109.47422 * 26.52726 * 28 27 20 41 41 H 1.09001 * 109.47100 * 146.51978 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8810 1.3817 10 1 6.4996 2.2812 1.3821 11 1 6.3979 0.2164 2.6502 12 1 6.5975 0.1471 0.2347 13 7 1.6524 2.0975 -1.2517 14 6 0.4331 2.6596 -1.3687 15 8 -0.3433 2.6274 -0.4339 16 6 0.0397 3.3154 -2.6342 17 6 0.9718 3.4685 -3.6626 18 6 0.6048 4.0811 -4.8437 19 6 -0.6848 4.5465 -5.0154 20 6 -1.6239 4.4005 -3.9958 21 6 -3.0087 4.9022 -4.1831 22 7 -4.0138 4.8273 -3.2994 23 7 -5.0448 5.3784 -3.8444 24 7 -4.7277 5.7823 -5.0248 25 1 -5.3259 6.2276 -5.6452 26 7 -3.4906 5.5025 -5.2531 27 6 -1.2636 3.7790 -2.8051 28 6 -2.2767 3.6121 -1.7020 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8294 -0.0614 2.9498 35 1 2.2719 2.1232 -1.9978 36 1 1.9813 3.1070 -3.5338 37 1 1.3285 4.1973 -5.6368 38 1 -0.9659 5.0247 -5.9421 39 1 -2.2025 4.4513 -1.0105 40 1 -3.2786 3.5818 -2.1304 41 1 -2.0819 2.6824 -1.1675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609187967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:12 Heat of formation + Delta-G solvation = 118.661652 kcal Electronic energy + Delta-G solvation = -25828.213452 eV Core-core repulsion = 22132.503174 eV Total energy + Delta-G solvation = -3695.710279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.61269 -40.08136 -38.17838 -35.15190 -34.73510 -33.80687 -32.54963 -32.21162 -31.30684 -30.18359 -27.38507 -26.58414 -25.08314 -24.23593 -23.49074 -22.51684 -21.23865 -20.22264 -19.47088 -19.14094 -17.72439 -17.30507 -16.18892 -15.85582 -15.55270 -15.16734 -14.75608 -14.70346 -14.39072 -14.02794 -13.49183 -13.36362 -12.99584 -12.66922 -12.59258 -12.09171 -11.96114 -11.84835 -11.71163 -11.53363 -11.47861 -11.27216 -11.22654 -11.02885 -10.97688 -10.80685 -10.63099 -10.30658 -10.13642 -9.59622 -9.04732 -8.82743 -8.78280 -8.60669 -8.46922 -7.79813 -6.11546 -4.21117 0.55412 0.98890 1.17501 2.05179 2.17857 3.25947 3.31601 3.32120 3.34431 3.50362 3.96332 4.11653 4.15563 4.38560 4.84169 4.89015 4.98584 5.17837 5.20038 5.22539 5.28841 5.50236 5.73969 5.85067 6.06808 6.18096 6.25129 6.25893 6.31648 6.42403 6.49007 6.63300 6.67371 6.73027 6.96117 7.08139 7.22712 7.39015 7.47104 7.63052 7.74471 7.91418 8.00579 8.19372 8.65972 8.77949 9.12278 9.46105 10.93678 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.003050 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.928884 B = 9178.600435 C = 9883.465692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.533 6.533 16 C -0.132 4.132 17 C -0.061 4.061 18 C -0.141 4.141 19 C -0.060 4.060 20 C -0.045 4.045 21 C 0.232 3.768 22 N -0.259 5.259 23 N -0.055 5.055 24 N -0.230 5.230 25 H 0.473 0.527 26 N -0.301 5.301 27 C 0.021 3.979 28 C -0.143 4.143 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.265 0.735 35 H 0.387 0.613 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.850 8.903 -16.950 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.412 6.412 16 C -0.135 4.135 17 C -0.081 4.081 18 C -0.159 4.159 19 C -0.080 4.080 20 C -0.049 4.049 21 C -0.047 4.047 22 N -0.132 5.132 23 N -0.050 5.050 24 N -0.075 5.075 25 H 0.327 0.673 26 N -0.152 5.152 27 C 0.018 3.982 28 C -0.199 4.199 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.009 8.873 -15.865 21.787 hybrid contribution 1.470 0.262 -0.950 1.770 sum -10.539 9.135 -16.815 21.847 Atomic orbital electron populations 1.21855 0.98293 0.98102 1.01303 1.21938 0.92681 0.99735 1.02279 1.18807 0.94185 0.89191 0.80832 0.93085 1.21184 0.90698 1.39167 1.06338 0.92165 1.24873 0.98543 0.94795 0.95386 1.69883 1.35208 1.37460 1.09317 0.86527 0.84927 0.78302 0.77450 1.20191 1.21149 1.20184 1.46467 1.14121 1.55740 1.18590 1.18023 0.83049 0.79398 0.86727 1.90694 1.50520 1.60115 1.39907 1.20129 0.93888 1.03268 0.96237 1.21592 0.99325 0.94943 0.92222 1.20959 0.96055 1.00775 0.98078 1.21226 0.92515 0.96656 0.97600 1.17080 0.86931 1.04717 0.96131 1.23616 0.96356 0.98270 0.86462 1.76256 0.96017 1.16487 1.24437 1.78971 1.22102 1.09770 0.94144 1.47693 1.07710 1.39135 1.12988 0.67266 1.74893 0.95044 1.19651 1.25639 1.20115 0.94041 0.90389 0.93660 1.21594 0.97001 1.05300 0.96005 0.93025 0.94215 0.95882 0.95064 0.88273 0.92492 0.78007 0.84815 0.84868 0.84961 0.90501 0.89310 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.66 2.24 -69.09 -0.15 6.51 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -14.16 4.97 -55.88 -0.28 -14.44 16 14 C 0.54 10.63 6.26 -12.32 -0.08 10.55 16 15 O -0.53 -11.84 10.41 5.32 0.06 -11.79 16 16 C -0.13 -2.10 5.87 -105.01 -0.62 -2.71 16 17 C -0.06 -0.77 9.52 -39.14 -0.37 -1.15 16 18 C -0.14 -1.46 10.02 -39.68 -0.40 -1.86 16 19 C -0.06 -0.65 9.69 -39.18 -0.38 -1.03 16 20 C -0.05 -0.60 5.87 -104.94 -0.62 -1.22 16 21 C 0.23 2.99 7.79 -156.30 -1.22 1.77 16 22 N -0.26 -3.52 9.03 32.16 0.29 -3.23 16 23 N -0.06 -0.61 13.47 60.35 0.81 0.21 16 24 N -0.23 -1.81 7.90 60.35 0.48 -1.34 16 25 H 0.47 1.28 8.96 -340.37 -3.05 -1.77 16 26 N -0.30 -3.14 12.07 32.17 0.39 -2.75 16 27 C 0.02 0.33 5.94 -103.89 -0.62 -0.29 16 28 C -0.14 -2.31 8.14 36.00 0.29 -2.02 16 29 H 0.05 1.20 7.84 -51.93 -0.41 0.80 16 30 H 0.04 0.85 5.63 -51.93 -0.29 0.56 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.39 6.73 6.60 -40.82 -0.27 6.46 16 36 H 0.13 1.48 6.44 -52.49 -0.34 1.14 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.17 7.87 -52.49 -0.41 0.76 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.36 4.89 -51.93 -0.25 1.11 16 41 H 0.10 1.89 5.65 -51.93 -0.29 1.60 16 LS Contribution 335.27 15.07 5.05 5.05 Total: -1.00 -31.42 335.27 -9.23 -40.65 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.25 Total: 5.92 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -4.38 Total: -9.83 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 2.32 Total: -45.31 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.06 Total: -11.79 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.42 -9.23 -40.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.309 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds