Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47388 * 2 1 4 4 H 1.08999 * 109.46614 * 55.00517 * 3 2 1 5 5 C 1.50699 * 109.47010 * 175.00283 * 3 2 1 6 6 H 1.07998 * 119.99878 * 120.00699 * 5 3 2 7 7 C 1.37879 * 120.00152 * 299.99888 * 5 3 2 8 8 N 1.31518 * 119.99940 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00296 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47031 * 60.00277 * 9 7 5 11 11 H 1.48501 * 109.47563 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47210 * 300.00387 * 9 7 5 13 13 N 1.46492 * 109.47171 * 295.00496 * 3 2 1 14 14 C 1.34777 * 120.00030 * 84.71999 * 13 3 2 15 15 O 1.21552 * 120.00351 * 0.27684 * 14 13 3 16 16 C 1.47866 * 119.99658 * 180.27217 * 14 13 3 17 17 C 1.39644 * 120.09009 * 353.79048 * 16 14 13 18 18 C 1.38015 * 120.09390 * 180.02562 * 17 16 14 19 19 C 1.38179 * 120.26739 * 0.02562 * 18 17 16 20 20 C 1.39384 * 120.17120 * 0.02562 * 19 18 17 21 21 C 1.48478 * 120.04655 * 179.97438 * 20 19 18 22 22 N 1.34038 * 126.67678 * 179.68687 * 21 20 19 23 23 N 1.28988 * 107.26980 * 179.87329 * 22 21 20 24 24 N 1.28725 * 108.94412 * 0.40464 * 23 22 21 25 25 H 0.97001 * 125.34556 * 179.74797 * 24 23 22 26 26 N 1.28873 * 109.31478 * 359.74199 * 24 23 22 27 27 C 1.39067 * 119.91014 * 359.68735 * 20 19 18 28 28 C 1.50692 * 120.13643 * 180.31370 * 27 20 19 29 29 H 1.09006 * 109.47019 * 299.99596 * 1 2 3 30 30 H 1.08995 * 109.47302 * 59.99276 * 1 2 3 31 31 H 1.08997 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47019 * 240.00404 * 2 1 3 33 33 H 1.08995 * 109.47302 * 120.00724 * 2 1 3 34 34 H 0.97003 * 120.00263 * 180.02562 * 8 7 5 35 35 H 0.97006 * 120.00253 * 264.99659 * 13 3 2 36 36 H 1.07996 * 119.95942 * 0.02562 * 17 16 14 37 37 H 1.07991 * 119.87342 * 180.02562 * 18 17 16 38 38 H 1.07994 * 119.91180 * 180.02562 * 19 18 17 39 39 H 1.08994 * 109.47693 * 266.52519 * 28 27 20 40 40 H 1.09001 * 109.47422 * 26.52726 * 28 27 20 41 41 H 1.09001 * 109.47100 * 146.51978 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3365 2.1728 9 14 6.0050 0.8810 1.3817 10 1 6.4996 2.2812 1.3821 11 1 6.3979 0.2164 2.6502 12 1 6.5975 0.1471 0.2347 13 7 1.6524 2.0975 -1.2517 14 6 0.4331 2.6596 -1.3687 15 8 -0.3433 2.6274 -0.4339 16 6 0.0397 3.3154 -2.6342 17 6 0.9718 3.4685 -3.6626 18 6 0.6048 4.0811 -4.8437 19 6 -0.6848 4.5465 -5.0154 20 6 -1.6239 4.4005 -3.9958 21 6 -3.0087 4.9022 -4.1831 22 7 -4.0138 4.8273 -3.2994 23 7 -5.0448 5.3784 -3.8444 24 7 -4.7277 5.7823 -5.0248 25 1 -5.3259 6.2276 -5.6452 26 7 -3.4906 5.5025 -5.2531 27 6 -1.2636 3.7790 -2.8051 28 6 -2.2767 3.6121 -1.7020 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8294 -0.0614 2.9498 35 1 2.2719 2.1232 -1.9978 36 1 1.9813 3.1070 -3.5338 37 1 1.3285 4.1973 -5.6368 38 1 -0.9659 5.0247 -5.9421 39 1 -2.2025 4.4513 -1.0105 40 1 -3.2786 3.5818 -2.1304 41 1 -2.0819 2.6824 -1.1675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609187967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = 97.681827 kcal Electronic energy + Delta-G solvation = -25829.123206 eV Core-core repulsion = 22132.503174 eV Total energy + Delta-G solvation = -3696.620032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.46657 -41.37519 -39.52863 -36.93557 -35.66353 -34.78889 -34.23899 -33.36750 -32.96240 -31.44311 -29.02975 -28.01153 -25.98270 -25.22100 -25.15708 -23.97393 -22.27229 -21.77172 -21.06217 -20.09384 -19.18016 -18.14818 -17.81717 -17.28864 -16.71613 -16.55478 -16.31048 -16.02195 -15.87881 -15.17722 -14.74684 -14.64733 -14.51778 -14.23490 -13.79972 -13.53080 -13.36019 -13.16172 -13.09887 -12.93480 -12.82416 -12.75418 -12.61271 -12.39942 -12.29127 -12.14963 -12.02335 -11.93049 -11.70105 -11.52215 -11.02243 -10.52640 -10.26311 -9.92202 -9.63060 -9.50451 -8.12565 -6.29828 -0.38257 0.00391 0.21332 1.22369 1.43290 1.47524 1.49242 1.56807 2.09743 2.36361 2.54663 2.72625 2.89131 3.16848 3.18673 3.84002 3.89746 3.98341 4.12997 4.21235 4.39816 4.47770 4.52946 4.60774 4.72716 4.80847 4.84437 4.89666 4.96253 5.10930 5.29529 5.31282 5.35617 5.46487 5.51068 5.52164 5.60928 5.64239 5.72018 5.82421 5.85946 5.98229 6.20747 6.77925 7.02464 7.13618 7.36932 7.61062 8.92604 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026561 B = 0.003050 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.928884 B = 9178.600435 C = 9883.465692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.699 5.699 14 C 0.538 3.462 15 O -0.569 6.569 16 C -0.154 4.154 17 C -0.059 4.059 18 C -0.122 4.122 19 C -0.045 4.045 20 C -0.050 4.050 21 C 0.215 3.785 22 N -0.295 5.295 23 N -0.062 5.062 24 N -0.197 5.197 25 H 0.495 0.505 26 N -0.287 5.287 27 C 0.001 3.999 28 C -0.131 4.131 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.150 0.850 37 H 0.177 0.823 38 H 0.163 0.837 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.879 10.046 -20.892 25.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.348 5.348 14 C 0.327 3.673 15 O -0.451 6.451 16 C -0.157 4.157 17 C -0.079 4.079 18 C -0.139 4.139 19 C -0.065 4.065 20 C -0.053 4.053 21 C -0.064 4.064 22 N -0.166 5.166 23 N -0.056 5.056 24 N -0.048 5.048 25 H 0.354 0.646 26 N -0.140 5.140 27 C -0.002 4.002 28 C -0.188 4.188 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.180 0.820 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.056 10.038 -19.856 24.845 hybrid contribution 1.032 0.019 0.148 1.043 sum -10.024 10.057 -19.708 24.290 Atomic orbital electron populations 1.21687 0.97086 0.99039 1.00298 1.21785 0.93651 0.99212 1.01274 1.18362 0.93649 0.89070 0.81192 0.98265 1.21555 0.91375 1.38917 1.06754 0.90842 1.25761 1.03226 0.94413 0.95046 1.70048 1.37113 1.38346 1.09853 0.85443 0.79220 0.78426 0.77518 1.19665 1.21425 1.18796 1.46177 1.14986 1.55985 1.17673 1.18647 0.82160 0.78681 0.87856 1.90686 1.51414 1.61257 1.41715 1.19809 0.95089 1.05341 0.95455 1.21811 0.99262 0.94749 0.92064 1.21408 0.96502 0.98244 0.97786 1.21626 0.92063 0.95141 0.97642 1.17181 0.87884 1.04419 0.95834 1.23619 0.96353 0.99348 0.87070 1.76192 0.96828 1.17858 1.25720 1.78916 1.21503 1.10162 0.95050 1.47771 1.07325 1.37219 1.12454 0.64579 1.74838 0.95656 1.18923 1.24572 1.20027 0.93647 0.92103 0.94415 1.21374 0.98177 1.03075 0.96153 0.95420 0.93833 0.93787 0.94065 0.90994 0.92662 0.76211 0.83266 0.80539 0.81969 0.92170 0.88559 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.68 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.33 2.24 44.25 0.10 14.43 16 4 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 5 C -0.55 -28.62 8.73 25.60 0.22 -28.40 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.84 5.29 84.65 0.45 1.28 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.70 -28.80 4.97 -448.97 -2.23 -31.03 16 14 C 0.54 21.92 6.26 86.79 0.54 22.47 16 15 O -0.57 -27.17 10.41 -3.88 -0.04 -27.21 16 16 C -0.15 -4.87 5.87 -20.11 -0.12 -4.99 16 17 C -0.06 -1.35 9.52 22.56 0.21 -1.14 16 18 C -0.12 -1.97 10.02 22.20 0.22 -1.75 16 19 C -0.04 -0.80 9.69 22.53 0.22 -0.58 16 20 C -0.05 -1.24 5.87 -20.07 -0.12 -1.36 16 21 C 0.22 5.22 7.79 137.39 1.07 6.29 16 22 N -0.29 -7.87 9.03 -52.17 -0.47 -8.34 16 23 N -0.06 -1.29 13.47 37.02 0.50 -0.79 16 24 N -0.20 -2.60 7.90 37.02 0.29 -2.31 16 25 H 0.49 1.15 8.96 -347.54 -3.12 -1.97 16 26 N -0.29 -5.17 12.07 -52.12 -0.63 -5.80 16 27 C 0.00 0.04 5.94 -19.39 -0.12 -0.07 16 28 C -0.13 -4.55 8.14 71.23 0.58 -3.97 16 29 H 0.03 1.36 7.84 -2.38 -0.02 1.34 16 30 H 0.04 1.94 5.63 -2.39 -0.01 1.92 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 34 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.40 13.74 6.60 -92.70 -0.61 13.13 16 36 H 0.15 2.86 6.44 -2.91 -0.02 2.84 16 37 H 0.18 1.43 8.06 -2.92 -0.02 1.41 16 38 H 0.16 1.98 7.87 -2.91 -0.02 1.96 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 3.13 4.89 -2.39 -0.01 3.12 16 41 H 0.07 2.98 5.65 -2.39 -0.01 2.97 16 Total: -1.00 -72.46 335.27 1.12 -71.34 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -2.61 Total: 21.19 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.05 Total: -8.65 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -2.30 Total: -100.38 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -72.46 1.12 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.025 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds