Wall clock time and date at job start Tue Mar 31 2020 11:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 H 1.08994 * 109.47177 * 307.51219 * 3 2 1 5 5 C 1.50699 * 109.47310 * 187.51092 * 3 2 1 6 6 H 1.08003 * 120.00592 * 245.29979 * 5 3 2 7 7 C 1.37877 * 119.99911 * 65.02105 * 5 3 2 8 8 N 1.31518 * 120.00044 * 7.74645 * 7 5 3 9 9 Si 1.86802 * 120.00237 * 187.74799 * 7 5 3 10 10 H 1.48503 * 109.47086 * 94.95079 * 9 7 5 11 11 H 1.48504 * 109.47241 * 214.94946 * 9 7 5 12 12 H 1.48500 * 109.47218 * 334.95391 * 9 7 5 13 13 N 1.46498 * 109.47181 * 67.51092 * 3 2 1 14 14 C 1.34778 * 120.00359 * 275.00033 * 13 3 2 15 15 O 1.21552 * 119.99419 * 359.97438 * 14 13 3 16 16 C 1.47858 * 120.00146 * 180.02562 * 14 13 3 17 17 C 1.39651 * 120.08933 * 353.78714 * 16 14 13 18 18 C 1.38013 * 120.09177 * 179.97438 * 17 16 14 19 19 C 1.38175 * 120.26930 * 0.02562 * 18 17 16 20 20 C 1.39384 * 120.17409 * 359.97438 * 19 18 17 21 21 C 1.48477 * 120.04416 * 180.02562 * 20 19 18 22 22 N 1.34039 * 126.66791 * 179.69049 * 21 20 19 23 23 N 1.28987 * 107.26515 * 179.83399 * 22 21 20 24 24 N 1.28722 * 108.94310 * 0.42558 * 23 22 21 25 25 H 0.97002 * 125.34289 * 179.74437 * 24 23 22 26 26 N 1.28866 * 109.31653 * 359.72998 * 24 23 22 27 27 C 1.39070 * 119.90624 * 359.74372 * 20 19 18 28 28 C 1.50693 * 120.13261 * 180.27667 * 27 20 19 29 29 H 1.09004 * 109.47376 * 299.99828 * 1 2 3 30 30 H 1.08990 * 109.47357 * 60.00068 * 1 2 3 31 31 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47376 * 240.00007 * 2 1 3 33 33 H 1.08998 * 109.47413 * 119.99669 * 2 1 3 34 34 H 0.97001 * 120.00008 * 179.97438 * 8 7 5 35 35 H 0.97008 * 119.99888 * 95.00448 * 13 3 2 36 36 H 1.07998 * 119.95642 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.86347 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.90943 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47360 * 265.77843 * 28 27 20 40 40 H 1.09002 * 109.47155 * 25.78011 * 28 27 20 41 41 H 1.08998 * 109.47005 * 145.78235 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5710 1.9936 -0.8151 5 6 3.5354 1.4467 -0.1857 6 1 4.1771 1.8016 0.6072 7 6 4.0848 0.9920 -1.3657 8 7 3.3056 0.6985 -2.3838 9 14 5.9359 0.7928 -1.5185 10 1 6.3092 -0.6121 -1.2148 11 1 6.3574 1.1289 -2.9023 12 1 6.6125 1.7030 -0.5600 13 7 1.7046 2.0790 1.2762 14 6 0.4932 2.6438 1.4498 15 8 -0.3209 2.6254 0.5473 16 6 0.1550 3.2867 2.7377 17 6 1.0362 3.1977 3.8174 18 6 0.7208 3.7982 5.0193 19 6 -0.4670 4.4896 5.1619 20 6 -1.3547 4.5855 4.0916 21 6 -2.6299 5.3297 4.2479 22 7 -3.5717 5.5095 3.3112 23 7 -4.5170 6.2045 3.8472 24 7 -4.2006 6.4701 5.0663 25 1 -4.7409 6.9835 5.6871 26 7 -3.0536 5.9466 5.3328 27 6 -1.0415 3.9881 2.8754 28 6 -1.9946 4.0939 1.7130 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6922 0.3790 -3.2141 35 1 2.3544 2.0941 1.9962 36 1 1.9662 2.6589 3.7114 37 1 1.4052 3.7274 5.8517 38 1 -0.7081 4.9570 6.1052 39 1 -2.6424 3.2174 1.6933 40 1 -2.6022 4.9923 1.8219 41 1 -1.4288 4.1484 0.7830 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609187968.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:15 Heat of formation + Delta-G solvation = 117.126184 kcal Electronic energy + Delta-G solvation = -25797.919179 eV Core-core repulsion = 22102.142317 eV Total energy + Delta-G solvation = -3695.776861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.61411 -40.07520 -38.17370 -35.15002 -34.73464 -33.80575 -32.52664 -32.21172 -31.36274 -30.21570 -27.39979 -26.56584 -25.08417 -24.23530 -23.47890 -22.52811 -21.24554 -20.24594 -19.49394 -19.15018 -17.72616 -17.30488 -16.18061 -15.82838 -15.54744 -15.23500 -14.85146 -14.60430 -14.36855 -13.96638 -13.56371 -13.35316 -13.03332 -12.68661 -12.53528 -12.02890 -11.95497 -11.89673 -11.79384 -11.53234 -11.45280 -11.33150 -11.25948 -11.03134 -10.98259 -10.78928 -10.60748 -10.29074 -10.18280 -9.63749 -9.07810 -8.84249 -8.77213 -8.61292 -8.48120 -7.79604 -6.13661 -4.19920 0.55448 0.98979 1.17517 2.05281 2.17875 3.24923 3.32248 3.33578 3.34789 3.50329 3.96267 4.11067 4.16628 4.38750 4.84077 4.88853 4.98530 5.17899 5.19613 5.22343 5.28834 5.50020 5.73878 5.85088 6.07086 6.18286 6.25061 6.25987 6.31438 6.38466 6.44099 6.62927 6.63814 6.72580 6.96393 7.04109 7.20320 7.35189 7.44249 7.62204 7.72532 7.86243 8.00755 8.09183 8.66242 8.79609 9.12268 9.46318 10.94208 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.003039 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.469706 B = 9211.277723 C = 9774.845748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.058 0.942 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.701 5.701 14 C 0.542 3.458 15 O -0.532 6.532 16 C -0.132 4.132 17 C -0.061 4.061 18 C -0.141 4.141 19 C -0.059 4.059 20 C -0.045 4.045 21 C 0.232 3.768 22 N -0.259 5.259 23 N -0.055 5.055 24 N -0.230 5.230 25 H 0.473 0.527 26 N -0.301 5.301 27 C 0.021 3.979 28 C -0.143 4.143 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.386 0.614 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 8.887 17.577 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.168 3.832 4 H 0.076 0.924 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.349 5.349 14 C 0.328 3.672 15 O -0.411 6.411 16 C -0.135 4.135 17 C -0.081 4.081 18 C -0.159 4.159 19 C -0.080 4.080 20 C -0.048 4.048 21 C -0.047 4.047 22 N -0.132 5.132 23 N -0.050 5.050 24 N -0.075 5.075 25 H 0.327 0.673 26 N -0.152 5.152 27 C 0.018 3.982 28 C -0.199 4.199 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.220 0.780 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.108 0.892 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.080 9.039 16.481 21.820 hybrid contribution 1.463 -0.047 0.945 1.742 sum -9.617 8.992 17.426 21.840 Atomic orbital electron populations 1.21849 0.97948 0.98180 1.01670 1.21854 0.93094 0.99771 1.01182 1.18826 0.94936 0.89244 0.80220 0.92442 1.21195 0.90755 1.44336 1.01229 0.92105 1.24880 0.98289 0.95093 0.95227 1.69978 1.35038 1.43676 1.02906 0.86507 0.85089 0.78439 0.77508 1.20577 1.21144 1.19828 1.46459 1.13744 1.56084 1.18634 1.18030 0.83240 0.79463 0.86489 1.90700 1.48495 1.58848 1.43106 1.20127 0.95512 1.02193 0.95674 1.21588 0.98355 0.95957 0.92187 1.20957 0.97238 0.99680 0.97998 1.21225 0.92834 0.96355 0.97580 1.17080 0.90076 1.02448 0.95245 1.23613 0.96987 0.98596 0.85504 1.76248 0.99174 1.13387 1.24385 1.78971 1.20812 1.11881 0.93317 1.47690 1.12984 1.36004 1.10842 0.67266 1.74887 0.99384 1.14882 1.26071 1.20117 0.93659 0.90501 0.93915 1.21593 0.98116 1.03485 0.96687 0.93764 0.92971 0.95871 0.90022 0.94851 0.92575 0.78024 0.84841 0.84874 0.84962 0.90512 0.89222 0.87941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.57 37.16 0.32 -2.73 16 2 C -0.12 -2.83 5.50 -26.73 -0.15 -2.98 16 3 C 0.27 6.59 2.09 -69.08 -0.14 6.44 16 4 H 0.06 1.64 7.54 -51.93 -0.39 1.25 16 5 C -0.54 -13.87 8.67 -34.44 -0.30 -14.17 16 6 H 0.06 1.50 7.73 -52.48 -0.41 1.10 16 7 C 0.07 1.83 5.16 -17.82 -0.09 1.74 16 8 N -0.88 -24.55 12.06 55.43 0.67 -23.89 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.70 -14.11 4.99 -55.88 -0.28 -14.39 16 14 C 0.54 10.59 6.39 -12.32 -0.08 10.51 16 15 O -0.53 -11.81 10.45 5.32 0.06 -11.76 16 16 C -0.13 -2.09 5.87 -105.01 -0.62 -2.71 16 17 C -0.06 -0.77 9.52 -39.14 -0.37 -1.14 16 18 C -0.14 -1.46 10.02 -39.69 -0.40 -1.86 16 19 C -0.06 -0.65 9.69 -39.18 -0.38 -1.03 16 20 C -0.05 -0.60 5.87 -104.94 -0.62 -1.22 16 21 C 0.23 2.99 7.79 -156.31 -1.22 1.77 16 22 N -0.26 -3.52 9.02 32.16 0.29 -3.23 16 23 N -0.05 -0.61 13.47 60.35 0.81 0.21 16 24 N -0.23 -1.81 7.90 60.35 0.48 -1.34 16 25 H 0.47 1.28 8.96 -340.38 -3.05 -1.77 16 26 N -0.30 -3.14 12.07 32.17 0.39 -2.75 16 27 C 0.02 0.33 5.94 -103.89 -0.62 -0.29 16 28 C -0.14 -2.31 8.14 36.00 0.29 -2.02 16 29 H 0.04 0.95 5.59 -51.93 -0.29 0.66 16 30 H 0.05 1.22 7.98 -51.93 -0.41 0.80 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 2.13 6.65 -51.93 -0.35 1.78 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.39 6.69 6.59 -40.82 -0.27 6.42 16 36 H 0.13 1.46 6.44 -52.49 -0.34 1.12 16 37 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.17 7.87 -52.49 -0.41 0.75 16 39 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.38 4.84 -51.93 -0.25 1.13 16 41 H 0.10 1.89 5.70 -51.93 -0.30 1.59 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -31.63 336.73 -9.19 -40.82 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.29 Total: 5.58 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -4.37 Total: -9.66 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 2.36 Total: -45.38 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.06 Total: -11.76 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.63 -9.19 -40.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609187968.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.945 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds